Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS05780

Experiment: L-Asparagine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS05770 and RR42_RS05775 are separated by 99 nucleotidesRR42_RS05775 and RR42_RS05780 are separated by 39 nucleotidesRR42_RS05780 and RR42_RS05785 are separated by 99 nucleotides RR42_RS05770: RR42_RS05770 - aminotransferase, at 1,269,521 to 1,270,708 _RS05770 RR42_RS05775: RR42_RS05775 - hypothetical protein, at 1,270,808 to 1,271,317 _RS05775 RR42_RS05780: RR42_RS05780 - hypothetical protein, at 1,271,357 to 1,272,142 _RS05780 RR42_RS05785: RR42_RS05785 - hypothetical protein, at 1,272,242 to 1,273,384 _RS05785 Position (kb) 1271 1272 1273Strain fitness (log2 ratio) -2 -1 0 1 2at 1270.416 kb on + strand, within RR42_RS05770at 1270.417 kb on - strand, within RR42_RS05770at 1270.492 kb on - strand, within RR42_RS05770at 1270.764 kb on + strandat 1270.765 kb on - strandat 1271.059 kb on + strand, within RR42_RS05775at 1271.060 kb on - strand, within RR42_RS05775at 1271.133 kb on - strand, within RR42_RS05775at 1271.294 kb on + strandat 1271.294 kb on + strandat 1271.323 kb on - strandat 1271.393 kb on + strandat 1271.394 kb on - strandat 1271.423 kb on - strandat 1271.423 kb on - strandat 1271.618 kb on + strand, within RR42_RS05780at 1271.619 kb on - strand, within RR42_RS05780at 1271.786 kb on + strand, within RR42_RS05780at 1271.888 kb on + strand, within RR42_RS05780at 1271.889 kb on - strand, within RR42_RS05780at 1271.889 kb on - strand, within RR42_RS05780at 1272.018 kb on - strand, within RR42_RS05780at 1272.157 kb on - strandat 1272.164 kb on - strandat 1272.259 kb on + strandat 1272.259 kb on + strandat 1272.260 kb on - strandat 1272.479 kb on + strand, within RR42_RS05785at 1272.479 kb on + strand, within RR42_RS05785at 1272.479 kb on + strand, within RR42_RS05785at 1272.479 kb on + strand, within RR42_RS05785at 1272.480 kb on - strand, within RR42_RS05785at 1272.480 kb on - strand, within RR42_RS05785at 1272.480 kb on - strand, within RR42_RS05785at 1272.480 kb on - strand, within RR42_RS05785at 1272.480 kb on - strand, within RR42_RS05785at 1272.575 kb on + strand, within RR42_RS05785at 1272.576 kb on - strand, within RR42_RS05785at 1272.868 kb on + strand, within RR42_RS05785at 1272.986 kb on + strand, within RR42_RS05785at 1272.986 kb on + strand, within RR42_RS05785at 1272.986 kb on + strand, within RR42_RS05785at 1272.986 kb on + strand, within RR42_RS05785at 1272.987 kb on - strand, within RR42_RS05785at 1272.987 kb on - strand, within RR42_RS05785at 1272.987 kb on - strand, within RR42_RS05785at 1272.987 kb on - strand, within RR42_RS05785at 1272.989 kb on + strand, within RR42_RS05785at 1272.989 kb on + strand, within RR42_RS05785at 1272.989 kb on + strand, within RR42_RS05785at 1272.989 kb on + strand, within RR42_RS05785at 1272.989 kb on + strand, within RR42_RS05785at 1272.989 kb on + strand, within RR42_RS05785at 1273.061 kb on + strand, within RR42_RS05785at 1273.063 kb on + strand, within RR42_RS05785at 1273.064 kb on - strand, within RR42_RS05785

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (C)
remove
1,270,416 + RR42_RS05770 0.75 +0.1
1,270,417 - RR42_RS05770 0.75 -1.1
1,270,492 - RR42_RS05770 0.82 +1.1
1,270,764 + +0.2
1,270,765 - +0.4
1,271,059 + RR42_RS05775 0.49 +0.2
1,271,060 - RR42_RS05775 0.49 -0.8
1,271,133 - RR42_RS05775 0.64 +0.4
1,271,294 + +0.7
1,271,294 + -0.7
1,271,323 - -0.8
1,271,393 + +0.3
1,271,394 - -1.2
1,271,423 - -1.2
1,271,423 - +0.9
1,271,618 + RR42_RS05780 0.33 +1.8
1,271,619 - RR42_RS05780 0.33 +1.7
1,271,786 + RR42_RS05780 0.55 -1.5
1,271,888 + RR42_RS05780 0.68 +0.9
1,271,889 - RR42_RS05780 0.68 +0.3
1,271,889 - RR42_RS05780 0.68 +0.4
1,272,018 - RR42_RS05780 0.84 +0.9
1,272,157 - -0.2
1,272,164 - +0.9
1,272,259 + +0.5
1,272,259 + -1.1
1,272,260 - -0.2
1,272,479 + RR42_RS05785 0.21 +0.7
1,272,479 + RR42_RS05785 0.21 -0.1
1,272,479 + RR42_RS05785 0.21 -0.8
1,272,479 + RR42_RS05785 0.21 -0.2
1,272,480 - RR42_RS05785 0.21 -0.9
1,272,480 - RR42_RS05785 0.21 -0.4
1,272,480 - RR42_RS05785 0.21 +0.3
1,272,480 - RR42_RS05785 0.21 -0.7
1,272,480 - RR42_RS05785 0.21 -0.7
1,272,575 + RR42_RS05785 0.29 -0.2
1,272,576 - RR42_RS05785 0.29 -2.6
1,272,868 + RR42_RS05785 0.55 -0.5
1,272,986 + RR42_RS05785 0.65 +0.9
1,272,986 + RR42_RS05785 0.65 -1.5
1,272,986 + RR42_RS05785 0.65 +0.5
1,272,986 + RR42_RS05785 0.65 +0.3
1,272,987 - RR42_RS05785 0.65 -0.2
1,272,987 - RR42_RS05785 0.65 -0.9
1,272,987 - RR42_RS05785 0.65 +0.1
1,272,987 - RR42_RS05785 0.65 +0.3
1,272,989 + RR42_RS05785 0.65 -0.0
1,272,989 + RR42_RS05785 0.65 -1.7
1,272,989 + RR42_RS05785 0.65 -1.8
1,272,989 + RR42_RS05785 0.65 -0.4
1,272,989 + RR42_RS05785 0.65 +0.3
1,272,989 + RR42_RS05785 0.65 -0.7
1,273,061 + RR42_RS05785 0.72 -1.1
1,273,063 + RR42_RS05785 0.72 -1.5
1,273,064 - RR42_RS05785 0.72 -0.0

Or see this region's nucleotide sequence