Experiment: L-Asparagine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03780 and RR42_RS03785 are separated by 25 nucleotides RR42_RS03785 and RR42_RS03790 are separated by 410 nucleotides RR42_RS03790 and RR42_RS03795 are separated by 139 nucleotides
RR42_RS03780: RR42_RS03780 - lactate dehydrogenase, at 834,214 to 835,263
_RS03780
RR42_RS03785: RR42_RS03785 - membrane protein, at 835,289 to 836,815
_RS03785
RR42_RS03790: RR42_RS03790 - molybdenum cofactor biosynthesis protein MoaA, at 837,226 to 837,480
_RS03790
RR42_RS03795: RR42_RS03795 - tyrosine protein phosphatase, at 837,620 to 838,336
_RS03795
Position (kb) 835
836
837 Strain fitness (log2 ratio) -2
-1
0
1 at 834.383 kb on + strand, within RR42_RS03780 at 834.384 kb on - strand, within RR42_RS03780 at 834.384 kb on - strand, within RR42_RS03780 at 834.462 kb on + strand, within RR42_RS03780 at 834.462 kb on + strand, within RR42_RS03780 at 834.462 kb on + strand, within RR42_RS03780 at 834.463 kb on - strand, within RR42_RS03780 at 834.852 kb on + strand, within RR42_RS03780 at 834.852 kb on + strand, within RR42_RS03780 at 834.853 kb on - strand, within RR42_RS03780 at 835.109 kb on + strand, within RR42_RS03780 at 835.110 kb on - strand, within RR42_RS03780 at 835.110 kb on - strand, within RR42_RS03780 at 835.143 kb on - strand, within RR42_RS03780 at 835.255 kb on + strand at 835.255 kb on + strand at 835.256 kb on - strand at 835.314 kb on + strand at 835.314 kb on + strand at 836.019 kb on + strand, within RR42_RS03785 at 836.020 kb on - strand, within RR42_RS03785 at 836.502 kb on + strand, within RR42_RS03785 at 836.503 kb on - strand, within RR42_RS03785 at 836.700 kb on - strand at 836.716 kb on - strand at 836.993 kb on - strand at 836.993 kb on - strand at 837.037 kb on + strand at 837.128 kb on - strand at 837.128 kb on - strand at 837.128 kb on - strand at 837.237 kb on - strand at 837.295 kb on + strand, within RR42_RS03790 at 837.296 kb on - strand, within RR42_RS03790 at 837.427 kb on + strand, within RR42_RS03790 at 837.429 kb on + strand, within RR42_RS03790 at 837.429 kb on + strand, within RR42_RS03790 at 837.429 kb on + strand, within RR42_RS03790 at 837.429 kb on + strand, within RR42_RS03790
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (C) remove 834,383 + RR42_RS03780 0.16 -0.1 834,384 - RR42_RS03780 0.16 -0.9 834,384 - RR42_RS03780 0.16 -1.4 834,462 + RR42_RS03780 0.24 +1.4 834,462 + RR42_RS03780 0.24 +0.4 834,462 + RR42_RS03780 0.24 +0.4 834,463 - RR42_RS03780 0.24 +0.6 834,852 + RR42_RS03780 0.61 +0.1 834,852 + RR42_RS03780 0.61 +0.4 834,853 - RR42_RS03780 0.61 -0.9 835,109 + RR42_RS03780 0.85 -2.4 835,110 - RR42_RS03780 0.85 +0.3 835,110 - RR42_RS03780 0.85 +0.2 835,143 - RR42_RS03780 0.88 -0.4 835,255 + -0.1 835,255 + +1.2 835,256 - -0.1 835,314 + +0.8 835,314 + -0.2 836,019 + RR42_RS03785 0.48 +0.7 836,020 - RR42_RS03785 0.48 +0.0 836,502 + RR42_RS03785 0.79 +0.7 836,503 - RR42_RS03785 0.80 +0.5 836,700 - -0.7 836,716 - +0.5 836,993 - -1.3 836,993 - -0.9 837,037 + -1.0 837,128 - -0.8 837,128 - -2.7 837,128 - +0.0 837,237 - -0.3 837,295 + RR42_RS03790 0.27 -0.1 837,296 - RR42_RS03790 0.27 +0.4 837,427 + RR42_RS03790 0.79 +0.7 837,429 + RR42_RS03790 0.80 -0.1 837,429 + RR42_RS03790 0.80 +0.1 837,429 + RR42_RS03790 0.80 -0.5 837,429 + RR42_RS03790 0.80 -0.7
Or see this region's nucleotide sequence