Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS02360

Experiment: L-Asparagine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS02355 and RR42_RS02360 are separated by 127 nucleotidesRR42_RS02360 and RR42_RS02365 are separated by 15 nucleotides RR42_RS02355: RR42_RS02355 - ATPase, at 527,703 to 528,599 _RS02355 RR42_RS02360: RR42_RS02360 - carbon monoxide dehydrogenase, at 528,727 to 529,527 _RS02360 RR42_RS02365: RR42_RS02365 - carbon monoxide dehydrogenase, at 529,543 to 531,924 _RS02365 Position (kb) 528 529 530Strain fitness (log2 ratio) -3 -2 -1 0 1at 527.776 kb on + strandat 527.777 kb on - strandat 528.004 kb on + strand, within RR42_RS02355at 528.020 kb on - strand, within RR42_RS02355at 528.283 kb on + strand, within RR42_RS02355at 528.284 kb on - strand, within RR42_RS02355at 528.352 kb on + strand, within RR42_RS02355at 528.364 kb on + strand, within RR42_RS02355at 528.394 kb on + strand, within RR42_RS02355at 528.395 kb on - strand, within RR42_RS02355at 528.514 kb on + strandat 528.547 kb on + strandat 528.547 kb on + strandat 529.010 kb on + strand, within RR42_RS02360at 529.010 kb on + strand, within RR42_RS02360at 529.011 kb on - strand, within RR42_RS02360at 529.079 kb on + strand, within RR42_RS02360at 529.376 kb on - strand, within RR42_RS02360at 529.408 kb on + strand, within RR42_RS02360at 529.408 kb on + strand, within RR42_RS02360at 529.448 kb on + strandat 529.523 kb on + strandat 529.523 kb on + strandat 529.523 kb on + strandat 529.524 kb on - strandat 529.524 kb on - strandat 529.524 kb on - strandat 529.549 kb on - strandat 529.699 kb on + strandat 529.700 kb on - strandat 529.784 kb on + strand, within RR42_RS02365at 529.785 kb on - strand, within RR42_RS02365at 529.785 kb on - strand, within RR42_RS02365at 529.785 kb on - strand, within RR42_RS02365at 529.830 kb on - strand, within RR42_RS02365at 529.830 kb on - strand, within RR42_RS02365at 529.883 kb on - strand, within RR42_RS02365at 529.883 kb on - strand, within RR42_RS02365at 530.009 kb on + strand, within RR42_RS02365at 530.009 kb on + strand, within RR42_RS02365at 530.009 kb on + strand, within RR42_RS02365at 530.009 kb on + strand, within RR42_RS02365at 530.009 kb on + strand, within RR42_RS02365at 530.010 kb on - strand, within RR42_RS02365at 530.010 kb on - strand, within RR42_RS02365at 530.010 kb on - strand, within RR42_RS02365at 530.090 kb on + strand, within RR42_RS02365at 530.090 kb on + strand, within RR42_RS02365at 530.090 kb on + strand, within RR42_RS02365at 530.282 kb on + strand, within RR42_RS02365at 530.282 kb on + strand, within RR42_RS02365at 530.282 kb on + strand, within RR42_RS02365at 530.283 kb on - strand, within RR42_RS02365

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (C)
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527,776 + +0.0
527,777 - +0.2
528,004 + RR42_RS02355 0.34 +0.0
528,020 - RR42_RS02355 0.35 -0.0
528,283 + RR42_RS02355 0.65 +0.5
528,284 - RR42_RS02355 0.65 -1.3
528,352 + RR42_RS02355 0.72 -0.7
528,364 + RR42_RS02355 0.74 -1.2
528,394 + RR42_RS02355 0.77 +0.7
528,395 - RR42_RS02355 0.77 -0.1
528,514 + -1.8
528,547 + +0.7
528,547 + -0.6
529,010 + RR42_RS02360 0.35 +1.1
529,010 + RR42_RS02360 0.35 -0.5
529,011 - RR42_RS02360 0.35 +0.8
529,079 + RR42_RS02360 0.44 +0.6
529,376 - RR42_RS02360 0.81 -0.2
529,408 + RR42_RS02360 0.85 +0.0
529,408 + RR42_RS02360 0.85 -0.6
529,448 + -0.3
529,523 + +0.1
529,523 + +1.1
529,523 + -0.9
529,524 - +1.0
529,524 - -0.2
529,524 - +0.6
529,549 - -1.3
529,699 + +0.2
529,700 - -0.5
529,784 + RR42_RS02365 0.10 +0.5
529,785 - RR42_RS02365 0.10 -0.1
529,785 - RR42_RS02365 0.10 +1.2
529,785 - RR42_RS02365 0.10 +0.4
529,830 - RR42_RS02365 0.12 -0.3
529,830 - RR42_RS02365 0.12 -0.3
529,883 - RR42_RS02365 0.14 -1.5
529,883 - RR42_RS02365 0.14 +0.4
530,009 + RR42_RS02365 0.20 -0.6
530,009 + RR42_RS02365 0.20 +0.4
530,009 + RR42_RS02365 0.20 +0.2
530,009 + RR42_RS02365 0.20 +0.9
530,009 + RR42_RS02365 0.20 -1.6
530,010 - RR42_RS02365 0.20 -0.3
530,010 - RR42_RS02365 0.20 -0.6
530,010 - RR42_RS02365 0.20 -0.1
530,090 + RR42_RS02365 0.23 -2.9
530,090 + RR42_RS02365 0.23 +0.5
530,090 + RR42_RS02365 0.23 +0.5
530,282 + RR42_RS02365 0.31 +0.6
530,282 + RR42_RS02365 0.31 +0.5
530,282 + RR42_RS02365 0.31 +0.4
530,283 - RR42_RS02365 0.31 -1.1

Or see this region's nucleotide sequence