Experiment: apoplastic, sonication recovery; Green bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4998 and Psyr_4999 are separated by 63 nucleotides Psyr_4999 and Psyr_5000 are separated by 376 nucleotides Psyr_5000 and Psyr_5001 are separated by 77 nucleotides
Psyr_4998: Psyr_4998 - hypothetical protein, at 5,928,168 to 5,928,878
_4998
Psyr_4999: Psyr_4999 - hypothetical protein, at 5,928,942 to 5,929,493
_4999
Psyr_5000: Psyr_5000 - conserved hypothetical protein, at 5,929,870 to 5,930,298
_5000
Psyr_5001: Psyr_5001 - conserved hypothetical protein, at 5,930,376 to 5,932,823
_5001
Position (kb) 5929
5930
5931 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 5928.983 kb on + strand at 5928.983 kb on + strand at 5928.984 kb on - strand at 5928.984 kb on - strand at 5928.984 kb on - strand at 5928.984 kb on - strand at 5928.994 kb on - strand at 5929.026 kb on + strand, within Psyr_4999 at 5929.063 kb on + strand, within Psyr_4999 at 5929.063 kb on + strand, within Psyr_4999 at 5929.064 kb on - strand, within Psyr_4999 at 5929.064 kb on - strand, within Psyr_4999 at 5929.104 kb on + strand, within Psyr_4999 at 5929.104 kb on + strand, within Psyr_4999 at 5929.105 kb on - strand, within Psyr_4999 at 5929.159 kb on + strand, within Psyr_4999 at 5929.305 kb on + strand, within Psyr_4999 at 5929.305 kb on + strand, within Psyr_4999 at 5929.305 kb on + strand, within Psyr_4999 at 5929.305 kb on + strand, within Psyr_4999 at 5929.305 kb on + strand, within Psyr_4999 at 5929.306 kb on - strand, within Psyr_4999 at 5929.391 kb on + strand, within Psyr_4999 at 5929.491 kb on + strand at 5929.711 kb on - strand at 5929.712 kb on + strand at 5929.712 kb on + strand at 5929.712 kb on + strand at 5929.712 kb on + strand at 5929.712 kb on + strand at 5929.713 kb on - strand at 5929.713 kb on - strand at 5929.754 kb on + strand at 5929.754 kb on + strand at 5929.757 kb on + strand at 5929.757 kb on + strand at 5929.777 kb on + strand at 5929.777 kb on + strand at 5929.777 kb on + strand at 5929.777 kb on + strand at 5929.778 kb on - strand at 5929.778 kb on - strand at 5929.778 kb on - strand at 5929.778 kb on - strand at 5929.778 kb on - strand at 5929.778 kb on - strand at 5929.794 kb on + strand at 5929.863 kb on + strand at 5929.863 kb on + strand at 5929.863 kb on + strand at 5929.863 kb on + strand at 5929.863 kb on + strand at 5929.864 kb on - strand at 5929.864 kb on - strand at 5929.948 kb on + strand, within Psyr_5000 at 5929.948 kb on + strand, within Psyr_5000 at 5929.948 kb on + strand, within Psyr_5000 at 5929.948 kb on + strand, within Psyr_5000 at 5929.948 kb on + strand, within Psyr_5000 at 5929.948 kb on + strand, within Psyr_5000 at 5929.948 kb on + strand, within Psyr_5000 at 5929.948 kb on + strand, within Psyr_5000 at 5929.948 kb on + strand, within Psyr_5000 at 5929.948 kb on + strand, within Psyr_5000 at 5929.948 kb on + strand, within Psyr_5000 at 5929.949 kb on - strand, within Psyr_5000 at 5929.949 kb on - strand, within Psyr_5000 at 5929.949 kb on - strand, within Psyr_5000 at 5929.949 kb on - strand, within Psyr_5000 at 5929.949 kb on - strand, within Psyr_5000 at 5929.949 kb on - strand, within Psyr_5000 at 5929.949 kb on - strand, within Psyr_5000 at 5929.949 kb on - strand, within Psyr_5000 at 5929.949 kb on - strand, within Psyr_5000 at 5929.949 kb on - strand, within Psyr_5000 at 5930.010 kb on + strand, within Psyr_5000 at 5930.010 kb on + strand, within Psyr_5000 at 5930.011 kb on - strand, within Psyr_5000 at 5930.011 kb on - strand, within Psyr_5000 at 5930.011 kb on - strand, within Psyr_5000 at 5930.060 kb on - strand, within Psyr_5000 at 5930.060 kb on - strand, within Psyr_5000 at 5930.060 kb on - strand, within Psyr_5000 at 5930.133 kb on - strand, within Psyr_5000 at 5930.208 kb on + strand, within Psyr_5000 at 5930.208 kb on + strand, within Psyr_5000 at 5930.209 kb on - strand, within Psyr_5000 at 5930.209 kb on - strand, within Psyr_5000 at 5930.212 kb on + strand, within Psyr_5000 at 5930.212 kb on + strand, within Psyr_5000 at 5930.212 kb on + strand, within Psyr_5000 at 5930.212 kb on + strand, within Psyr_5000 at 5930.212 kb on + strand, within Psyr_5000 at 5930.213 kb on - strand, within Psyr_5000 at 5930.213 kb on - strand, within Psyr_5000 at 5930.213 kb on - strand, within Psyr_5000 at 5930.213 kb on - strand, within Psyr_5000 at 5930.213 kb on - strand, within Psyr_5000 at 5930.213 kb on - strand, within Psyr_5000 at 5930.230 kb on + strand, within Psyr_5000 at 5930.230 kb on + strand, within Psyr_5000 at 5930.230 kb on + strand, within Psyr_5000 at 5930.230 kb on + strand, within Psyr_5000 at 5930.230 kb on + strand, within Psyr_5000 at 5930.230 kb on + strand, within Psyr_5000 at 5930.230 kb on + strand, within Psyr_5000 at 5930.230 kb on + strand, within Psyr_5000 at 5930.231 kb on - strand, within Psyr_5000 at 5930.231 kb on - strand, within Psyr_5000 at 5930.236 kb on + strand, within Psyr_5000 at 5930.236 kb on + strand, within Psyr_5000 at 5930.236 kb on + strand, within Psyr_5000 at 5930.236 kb on + strand, within Psyr_5000 at 5930.236 kb on + strand, within Psyr_5000 at 5930.237 kb on - strand, within Psyr_5000 at 5930.237 kb on - strand, within Psyr_5000 at 5930.239 kb on + strand, within Psyr_5000 at 5930.239 kb on + strand, within Psyr_5000 at 5930.239 kb on + strand, within Psyr_5000 at 5930.240 kb on - strand, within Psyr_5000 at 5930.240 kb on - strand, within Psyr_5000 at 5930.240 kb on - strand, within Psyr_5000 at 5930.240 kb on - strand, within Psyr_5000 at 5930.240 kb on - strand, within Psyr_5000 at 5930.309 kb on + strand at 5930.309 kb on + strand at 5930.309 kb on + strand at 5930.377 kb on + strand at 5930.377 kb on + strand at 5930.377 kb on + strand at 5930.377 kb on + strand at 5930.378 kb on - strand at 5930.378 kb on - strand at 5930.378 kb on - strand at 5930.416 kb on + strand at 5930.416 kb on + strand at 5930.416 kb on + strand at 5930.416 kb on + strand at 5930.416 kb on + strand at 5930.416 kb on + strand at 5930.417 kb on - strand at 5930.417 kb on - strand at 5930.417 kb on - strand at 5930.417 kb on - strand at 5930.552 kb on - strand at 5930.629 kb on + strand, within Psyr_5001 at 5930.629 kb on + strand, within Psyr_5001 at 5930.630 kb on - strand, within Psyr_5001 at 5930.630 kb on - strand, within Psyr_5001 at 5930.802 kb on + strand, within Psyr_5001 at 5930.802 kb on + strand, within Psyr_5001 at 5930.802 kb on + strand, within Psyr_5001 at 5930.803 kb on - strand, within Psyr_5001 at 5930.803 kb on - strand, within Psyr_5001 at 5930.803 kb on - strand, within Psyr_5001 at 5930.803 kb on - strand, within Psyr_5001 at 5930.812 kb on + strand, within Psyr_5001 at 5930.812 kb on + strand, within Psyr_5001 at 5930.812 kb on + strand, within Psyr_5001 at 5930.812 kb on + strand, within Psyr_5001 at 5930.812 kb on + strand, within Psyr_5001 at 5930.813 kb on - strand, within Psyr_5001 at 5930.813 kb on - strand, within Psyr_5001 at 5930.886 kb on + strand, within Psyr_5001 at 5930.887 kb on - strand, within Psyr_5001 at 5930.887 kb on - strand, within Psyr_5001 at 5930.972 kb on - strand, within Psyr_5001 at 5930.972 kb on - strand, within Psyr_5001 at 5930.972 kb on - strand, within Psyr_5001 at 5931.054 kb on + strand, within Psyr_5001 at 5931.054 kb on + strand, within Psyr_5001 at 5931.054 kb on + strand, within Psyr_5001 at 5931.055 kb on - strand, within Psyr_5001 at 5931.055 kb on - strand, within Psyr_5001 at 5931.055 kb on - strand, within Psyr_5001 at 5931.055 kb on - strand, within Psyr_5001 at 5931.055 kb on - strand, within Psyr_5001 at 5931.055 kb on - strand, within Psyr_5001 at 5931.055 kb on - strand, within Psyr_5001 at 5931.058 kb on + strand, within Psyr_5001 at 5931.058 kb on + strand, within Psyr_5001 at 5931.058 kb on + strand, within Psyr_5001 at 5931.058 kb on + strand, within Psyr_5001 at 5931.058 kb on + strand, within Psyr_5001 at 5931.058 kb on + strand, within Psyr_5001 at 5931.059 kb on - strand, within Psyr_5001 at 5931.059 kb on - strand, within Psyr_5001 at 5931.059 kb on - strand, within Psyr_5001 at 5931.237 kb on + strand, within Psyr_5001 at 5931.238 kb on - strand, within Psyr_5001 at 5931.238 kb on - strand, within Psyr_5001 at 5931.238 kb on - strand, within Psyr_5001 at 5931.271 kb on + strand, within Psyr_5001 at 5931.272 kb on - strand, within Psyr_5001
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic, sonication recovery; Green bean remove 5,928,983 + -1.2 5,928,983 + +1.5 5,928,984 - -3.0 5,928,984 - -0.8 5,928,984 - -2.3 5,928,984 - -0.7 5,928,994 - -0.2 5,929,026 + Psyr_4999 0.15 -1.2 5,929,063 + Psyr_4999 0.22 +0.6 5,929,063 + Psyr_4999 0.22 -0.6 5,929,064 - Psyr_4999 0.22 +0.3 5,929,064 - Psyr_4999 0.22 -0.5 5,929,104 + Psyr_4999 0.29 +0.8 5,929,104 + Psyr_4999 0.29 -1.0 5,929,105 - Psyr_4999 0.30 +3.2 5,929,159 + Psyr_4999 0.39 -1.5 5,929,305 + Psyr_4999 0.66 +0.3 5,929,305 + Psyr_4999 0.66 -0.9 5,929,305 + Psyr_4999 0.66 +1.7 5,929,305 + Psyr_4999 0.66 +0.6 5,929,305 + Psyr_4999 0.66 +0.1 5,929,306 - Psyr_4999 0.66 -2.1 5,929,391 + Psyr_4999 0.81 -1.2 5,929,491 + +3.5 5,929,711 - -0.7 5,929,712 + -3.5 5,929,712 + -0.3 5,929,712 + -1.5 5,929,712 + +1.1 5,929,712 + +1.2 5,929,713 - -0.6 5,929,713 - -3.2 5,929,754 + -1.5 5,929,754 + -0.7 5,929,757 + -2.6 5,929,757 + -2.0 5,929,777 + -0.7 5,929,777 + -0.1 5,929,777 + -1.6 5,929,777 + -2.2 5,929,778 - +0.6 5,929,778 - -2.6 5,929,778 - +1.2 5,929,778 - -0.1 5,929,778 - +2.2 5,929,778 - -0.5 5,929,794 + +0.1 5,929,863 + +0.5 5,929,863 + +1.5 5,929,863 + +2.8 5,929,863 + -1.7 5,929,863 + +1.0 5,929,864 - -1.7 5,929,864 - +0.1 5,929,948 + Psyr_5000 0.18 -0.2 5,929,948 + Psyr_5000 0.18 +2.4 5,929,948 + Psyr_5000 0.18 -1.2 5,929,948 + Psyr_5000 0.18 +3.5 5,929,948 + Psyr_5000 0.18 -0.7 5,929,948 + Psyr_5000 0.18 +2.2 5,929,948 + Psyr_5000 0.18 -1.0 5,929,948 + Psyr_5000 0.18 -0.3 5,929,948 + Psyr_5000 0.18 +1.3 5,929,948 + Psyr_5000 0.18 +0.2 5,929,948 + Psyr_5000 0.18 +1.9 5,929,949 - Psyr_5000 0.18 -0.1 5,929,949 - Psyr_5000 0.18 -1.0 5,929,949 - Psyr_5000 0.18 +2.5 5,929,949 - Psyr_5000 0.18 -0.5 5,929,949 - Psyr_5000 0.18 +0.3 5,929,949 - Psyr_5000 0.18 +0.1 5,929,949 - Psyr_5000 0.18 +1.3 5,929,949 - Psyr_5000 0.18 -0.9 5,929,949 - Psyr_5000 0.18 +2.7 5,929,949 - Psyr_5000 0.18 +0.7 5,930,010 + Psyr_5000 0.33 +0.3 5,930,010 + Psyr_5000 0.33 -2.1 5,930,011 - Psyr_5000 0.33 -1.0 5,930,011 - Psyr_5000 0.33 -1.0 5,930,011 - Psyr_5000 0.33 +0.7 5,930,060 - Psyr_5000 0.44 -1.2 5,930,060 - Psyr_5000 0.44 +0.5 5,930,060 - Psyr_5000 0.44 +2.8 5,930,133 - Psyr_5000 0.61 -1.2 5,930,208 + Psyr_5000 0.79 -1.3 5,930,208 + Psyr_5000 0.79 +2.5 5,930,209 - Psyr_5000 0.79 +0.3 5,930,209 - Psyr_5000 0.79 -0.1 5,930,212 + Psyr_5000 0.80 -1.3 5,930,212 + Psyr_5000 0.80 +1.9 5,930,212 + Psyr_5000 0.80 -1.5 5,930,212 + Psyr_5000 0.80 -0.2 5,930,212 + Psyr_5000 0.80 +0.1 5,930,213 - Psyr_5000 0.80 -1.7 5,930,213 - Psyr_5000 0.80 -2.1 5,930,213 - Psyr_5000 0.80 -3.4 5,930,213 - Psyr_5000 0.80 -3.0 5,930,213 - Psyr_5000 0.80 -0.3 5,930,213 - Psyr_5000 0.80 +1.8 5,930,230 + Psyr_5000 0.84 +3.0 5,930,230 + Psyr_5000 0.84 -0.5 5,930,230 + Psyr_5000 0.84 -1.3 5,930,230 + Psyr_5000 0.84 +0.7 5,930,230 + Psyr_5000 0.84 -0.5 5,930,230 + Psyr_5000 0.84 +2.7 5,930,230 + Psyr_5000 0.84 -2.4 5,930,230 + Psyr_5000 0.84 +2.5 5,930,231 - Psyr_5000 0.84 -2.0 5,930,231 - Psyr_5000 0.84 -1.0 5,930,236 + Psyr_5000 0.85 +2.8 5,930,236 + Psyr_5000 0.85 +1.2 5,930,236 + Psyr_5000 0.85 +1.1 5,930,236 + Psyr_5000 0.85 +2.1 5,930,236 + Psyr_5000 0.85 +1.9 5,930,237 - Psyr_5000 0.86 -0.8 5,930,237 - Psyr_5000 0.86 -0.4 5,930,239 + Psyr_5000 0.86 +0.1 5,930,239 + Psyr_5000 0.86 +1.3 5,930,239 + Psyr_5000 0.86 +2.2 5,930,240 - Psyr_5000 0.86 -0.2 5,930,240 - Psyr_5000 0.86 +4.4 5,930,240 - Psyr_5000 0.86 -1.0 5,930,240 - Psyr_5000 0.86 -0.4 5,930,240 - Psyr_5000 0.86 +1.0 5,930,309 + +0.3 5,930,309 + +0.7 5,930,309 + -2.0 5,930,377 + -1.3 5,930,377 + +0.4 5,930,377 + -0.5 5,930,377 + -1.6 5,930,378 - +0.6 5,930,378 - +3.1 5,930,378 - +0.9 5,930,416 + +0.3 5,930,416 + -1.7 5,930,416 + -1.0 5,930,416 + +0.0 5,930,416 + -1.7 5,930,416 + +0.6 5,930,417 - -2.6 5,930,417 - -2.2 5,930,417 - -2.9 5,930,417 - -0.7 5,930,552 - -0.3 5,930,629 + Psyr_5001 0.10 +0.2 5,930,629 + Psyr_5001 0.10 -0.1 5,930,630 - Psyr_5001 0.10 +0.4 5,930,630 - Psyr_5001 0.10 +2.6 5,930,802 + Psyr_5001 0.17 -0.7 5,930,802 + Psyr_5001 0.17 -0.9 5,930,802 + Psyr_5001 0.17 -0.8 5,930,803 - Psyr_5001 0.17 -1.0 5,930,803 - Psyr_5001 0.17 -0.1 5,930,803 - Psyr_5001 0.17 -1.1 5,930,803 - Psyr_5001 0.17 -2.3 5,930,812 + Psyr_5001 0.18 +0.8 5,930,812 + Psyr_5001 0.18 +0.3 5,930,812 + Psyr_5001 0.18 +2.3 5,930,812 + Psyr_5001 0.18 -1.7 5,930,812 + Psyr_5001 0.18 +2.2 5,930,813 - Psyr_5001 0.18 +0.6 5,930,813 - Psyr_5001 0.18 -1.5 5,930,886 + Psyr_5001 0.21 -0.5 5,930,887 - Psyr_5001 0.21 +0.3 5,930,887 - Psyr_5001 0.21 -2.9 5,930,972 - Psyr_5001 0.24 -0.5 5,930,972 - Psyr_5001 0.24 +2.4 5,930,972 - Psyr_5001 0.24 -1.3 5,931,054 + Psyr_5001 0.28 +2.4 5,931,054 + Psyr_5001 0.28 +0.1 5,931,054 + Psyr_5001 0.28 +0.5 5,931,055 - Psyr_5001 0.28 +0.0 5,931,055 - Psyr_5001 0.28 +0.2 5,931,055 - Psyr_5001 0.28 -2.2 5,931,055 - Psyr_5001 0.28 -1.0 5,931,055 - Psyr_5001 0.28 -0.0 5,931,055 - Psyr_5001 0.28 +0.8 5,931,055 - Psyr_5001 0.28 +0.5 5,931,058 + Psyr_5001 0.28 -1.1 5,931,058 + Psyr_5001 0.28 -0.6 5,931,058 + Psyr_5001 0.28 -1.8 5,931,058 + Psyr_5001 0.28 -0.2 5,931,058 + Psyr_5001 0.28 +0.9 5,931,058 + Psyr_5001 0.28 -2.4 5,931,059 - Psyr_5001 0.28 -0.2 5,931,059 - Psyr_5001 0.28 +0.0 5,931,059 - Psyr_5001 0.28 -1.6 5,931,237 + Psyr_5001 0.35 +1.6 5,931,238 - Psyr_5001 0.35 -0.5 5,931,238 - Psyr_5001 0.35 +1.3 5,931,238 - Psyr_5001 0.35 -2.1 5,931,271 + Psyr_5001 0.37 +2.3 5,931,272 - Psyr_5001 0.37 +0.1
Or see this region's nucleotide sequence