Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4919

Experiment: apoplastic, sonication recovery; Green bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic, sonication recovery; Green bean
5,832,232	+				+2.1
5,832,232	+				-0.8
5,832,233	-				-0.1
5,832,233	-				-1.5
5,832,233	-				+1.4
5,832,233	-				-1.0
5,832,257	-				-2.3
5,832,267	+				+1.0
5,832,346	+				-0.2
5,832,346	+				+1.0
5,832,346	+				-0.5
5,832,346	+				-0.8
5,832,346	+				-1.4
5,832,346	+				+1.1
5,832,346	+				-0.6
5,832,347	-				+1.4
5,832,347	-				+3.7
5,832,347	-				-3.3
5,832,353	+				+0.1
5,832,353	+				+3.3
5,832,353	+				+2.5
5,832,353	+				+2.1
5,832,353	+				+0.3
5,832,354	-				+0.7
5,832,354	-				+0.4
5,832,354	-				-1.3
5,832,354	-				-1.4
5,832,354	-				+2.9
5,832,354	-				-1.8
5,832,359	+				-3.7
5,832,359	+				+3.6
5,832,359	+				-0.7
5,832,359	+				-0.2
5,832,359	+				-1.1
5,832,359	+				+0.6
5,832,359	+				+1.0
5,832,359	+				+0.1
5,832,359	+				+0.7
5,832,359	+				+0.9
5,832,359	+				-1.3
5,832,359	+				+1.5
5,832,359	+				-2.6
5,832,359	+				-3.4
5,832,360	-				-0.7
5,832,360	-				-1.2
5,832,360	-				-0.9
5,832,360	-				-1.9
5,832,360	-				-2.2
5,832,360	-				-0.2
5,832,360	-				-1.1
5,832,360	-				+1.1
5,832,360	-				+7.3
5,832,360	-				-2.3
5,832,360	-				-2.9
5,832,360	-				-1.0
5,832,360	-				-2.2
5,832,360	-				-1.9
5,832,360	-				+0.5
5,832,360	-				+1.5
5,832,360	-				-1.5
5,832,365	+				-0.4
5,832,365	+				+4.2
5,832,365	+				+0.7
5,832,366	-				-2.6
5,832,369	+				-1.7
5,832,369	+				-1.8
5,832,369	+				-1.0
5,832,370	-				+2.0
5,832,370	-				-1.1
5,832,441	-				+0.0
5,832,441	-				-1.5
5,832,498	+				-0.6
5,832,498	+				+1.7
5,832,498	+				+0.5
5,832,498	+				+2.3
5,832,499	-				+0.6
5,832,499	-				-2.2
5,832,499	-				+0.5
5,832,499	-				-0.0
5,832,499	-				+0.5
5,832,499	-				-1.3
5,832,549	+				+1.8
5,832,549	+				+0.9
5,832,675	+				+0.7
5,832,683	+				-1.2
5,832,703	+				+1.3
5,832,714	-				-2.8
5,832,962	-				-0.4
5,832,998	+				-1.4
5,832,998	+				-0.6
5,833,017	+				-2.2
5,833,049	-				-0.7
5,833,052	+				-2.1
5,833,052	+				-2.0
5,833,053	-				-1.3
5,833,116	+				-0.4
5,833,117	-				-0.8
5,833,275	+		Psyr_4919	0.12	+0.6
5,833,275	+		Psyr_4919	0.12	-1.5
5,833,275	+		Psyr_4919	0.12	+2.0
5,833,276	-		Psyr_4919	0.12	+0.4
5,833,277	+		Psyr_4919	0.13	-3.4
5,833,277	+		Psyr_4919	0.13	+0.4
5,833,278	-		Psyr_4919	0.13	+1.1
5,833,284	-		Psyr_4919	0.14	+0.0
5,833,368	+		Psyr_4919	0.31	-0.7
5,833,368	+		Psyr_4919	0.31	+0.4
5,833,368	+		Psyr_4919	0.31	-1.0
5,833,368	+		Psyr_4919	0.31	+0.5
5,833,368	+		Psyr_4919	0.31	-0.3
5,833,369	-		Psyr_4919	0.31	+0.3
5,833,369	-		Psyr_4919	0.31	-2.5
5,833,369	-		Psyr_4919	0.31	+0.4
5,833,370	+		Psyr_4919	0.32	+0.6
5,833,370	+		Psyr_4919	0.32	-0.9
5,833,370	+		Psyr_4919	0.32	-2.2
5,833,370	+		Psyr_4919	0.32	-1.0
5,833,370	+		Psyr_4919	0.32	+0.0
5,833,370	+		Psyr_4919	0.32	-0.7
5,833,371	-		Psyr_4919	0.32	-1.3
5,833,371	-		Psyr_4919	0.32	-3.2
5,833,371	-		Psyr_4919	0.32	+0.4
5,833,371	-		Psyr_4919	0.32	-2.1
5,833,371	-		Psyr_4919	0.32	+2.8
5,833,371	-		Psyr_4919	0.32	+2.2
5,833,445	+		Psyr_4919	0.47	-2.2
5,833,445	+		Psyr_4919	0.47	-1.3
5,833,445	+		Psyr_4919	0.47	-0.7
5,833,445	+		Psyr_4919	0.47	-0.3
5,833,445	+		Psyr_4919	0.47	-0.4
5,833,445	+		Psyr_4919	0.47	-1.7
5,833,446	-		Psyr_4919	0.47	-0.1
5,833,446	-		Psyr_4919	0.47	-1.3
5,833,446	-		Psyr_4919	0.47	-2.0
5,833,446	-		Psyr_4919	0.47	+0.2
5,833,446	-		Psyr_4919	0.47	+2.7
5,833,501	+		Psyr_4919	0.58	-1.3
5,833,535	+		Psyr_4919	0.65	+1.8
5,833,535	+		Psyr_4919	0.65	+1.6
5,833,538	+		Psyr_4919	0.66	+0.9
5,833,614	+		Psyr_4919	0.81	+1.5
5,833,614	+		Psyr_4919	0.81	-1.6
5,833,614	+		Psyr_4919	0.81	+0.8
5,833,615	-		Psyr_4919	0.81	-0.4
5,833,637	+		Psyr_4919	0.86	-2.9
5,833,640	+		Psyr_4919	0.86	-3.5
5,833,640	+		Psyr_4919	0.86	-2.6
5,833,641	-		Psyr_4919	0.87	-0.5
5,833,641	-		Psyr_4919	0.87	-0.8
5,833,695	+				+0.8
5,833,695	+				-0.2
5,833,696	-				-1.6
5,833,696	-				+0.6
5,833,696	-				-1.5
5,833,696	-				-2.4
5,833,696	-				-2.1
5,833,696	-				-2.0
5,833,696	-				-1.3
5,833,696	-				+1.4
5,833,697	+				-1.9
5,833,697	+				-2.3
5,833,697	+				-2.9
5,833,698	-				-0.7
5,833,710	+				-2.1
5,833,710	+				-0.7
5,833,710	+				-0.7
5,833,711	-				-0.5
5,833,711	-				-2.5
5,833,711	-				-2.9
5,833,734	+				-2.1
5,833,734	+				-1.3
5,833,735	-				+1.5
5,833,780	+				-0.1
5,833,780	+				-0.2
5,833,780	+				-0.7
5,833,781	-				+0.1
5,833,782	+				+0.9
5,833,783	-				+1.6
5,833,783	-				-1.3
5,833,788	-				-2.3
5,833,800	+				+0.0
5,833,858	-				-1.6
5,833,898	+		Psyr_4920	0.12	-1.0
5,833,899	-		Psyr_4920	0.13	+1.8
5,833,949	+		Psyr_4920	0.21	+3.0
5,834,419	+				+0.5
5,834,419	+				-2.3
5,834,419	+				+1.5
5,834,419	+				-1.0
5,834,419	+				+2.3
5,834,419	+				+0.9
5,834,419	+				+1.8
5,834,419	+				+0.9
5,834,419	+				-1.4
5,834,420	-				+2.3
5,834,420	-				-0.7
5,834,420	-				-0.7
5,834,420	-				-0.1
5,834,420	-				-3.4
5,834,420	-				+1.8
5,834,420	-				+0.5
5,834,420	-				-1.5
5,834,420	-				+1.4
5,834,420	-				+0.5
5,834,420	-				-1.7
5,834,420	-				+0.9
5,834,476	+		Psyr_4921	0.15	-1.6
5,834,476	+		Psyr_4921	0.15	+2.4
5,834,476	+		Psyr_4921	0.15	-0.6
5,834,476	+		Psyr_4921	0.15	+0.0
5,834,476	+		Psyr_4921	0.15	+1.6
5,834,477	-		Psyr_4921	0.16	-2.2
5,834,477	-		Psyr_4921	0.16	+0.5
5,834,477	-		Psyr_4921	0.16	-1.9
5,834,477	-		Psyr_4921	0.16	+3.5
5,834,477	-		Psyr_4921	0.16	+0.2
5,834,477	-		Psyr_4921	0.16	+1.9
5,834,477	-		Psyr_4921	0.16	+3.3
5,834,483	+		Psyr_4921	0.17	+1.0
5,834,483	+		Psyr_4921	0.17	-0.1
5,834,484	-		Psyr_4921	0.17	-2.0
5,834,514	+		Psyr_4921	0.25	+0.9
5,834,515	-		Psyr_4921	0.26	-1.7
5,834,515	-		Psyr_4921	0.26	-0.6
5,834,574	-		Psyr_4921	0.41	+0.9
5,834,574	-		Psyr_4921	0.41	-2.5
5,834,634	+		Psyr_4921	0.57	+2.2
5,834,634	+		Psyr_4921	0.57	+0.5
5,834,635	-		Psyr_4921	0.57	-0.4
5,834,635	-		Psyr_4921	0.57	+1.3