Experiment: apoplastic, sonication recovery; Green bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4793 and Psyr_4794 are separated by 20 nucleotides Psyr_4794 and Psyr_4795 are separated by 81 nucleotides
Psyr_4793: Psyr_4793 - transcriptional regulator, ArsR family, at 5,681,724 to 5,682,719
_4793
Psyr_4794: Psyr_4794 - methionine adenosyltransferase, at 5,682,740 to 5,683,930
_4794
Psyr_4795: Psyr_4795 - Lysine exporter protein (LYSE/YGGA), at 5,684,012 to 5,684,632
_4795
Position (kb) 5682
5683
5684 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 5682.055 kb on + strand, within Psyr_4793 at 5682.055 kb on + strand, within Psyr_4793 at 5682.055 kb on + strand, within Psyr_4793 at 5682.055 kb on + strand, within Psyr_4793 at 5682.055 kb on + strand, within Psyr_4793 at 5682.055 kb on + strand, within Psyr_4793 at 5682.171 kb on + strand, within Psyr_4793 at 5682.171 kb on + strand, within Psyr_4793 at 5682.238 kb on + strand, within Psyr_4793 at 5682.238 kb on + strand, within Psyr_4793 at 5682.490 kb on + strand, within Psyr_4793 at 5682.490 kb on + strand, within Psyr_4793 at 5682.490 kb on + strand, within Psyr_4793 at 5682.490 kb on + strand, within Psyr_4793 at 5682.490 kb on + strand, within Psyr_4793 at 5682.490 kb on + strand, within Psyr_4793 at 5682.527 kb on + strand, within Psyr_4793 at 5682.527 kb on + strand, within Psyr_4793 at 5682.622 kb on + strand at 5682.642 kb on + strand at 5682.642 kb on + strand at 5682.642 kb on + strand at 5682.642 kb on + strand at 5682.642 kb on + strand at 5682.642 kb on + strand at 5682.642 kb on + strand at 5682.646 kb on + strand at 5682.646 kb on + strand at 5682.646 kb on + strand at 5682.646 kb on + strand at 5682.646 kb on + strand at 5682.646 kb on + strand at 5682.646 kb on + strand at 5682.646 kb on + strand at 5682.646 kb on + strand at 5682.646 kb on + strand at 5682.652 kb on + strand at 5682.652 kb on + strand at 5682.652 kb on + strand at 5682.652 kb on + strand at 5682.652 kb on + strand at 5682.652 kb on + strand at 5682.652 kb on + strand at 5682.652 kb on + strand at 5682.652 kb on + strand at 5682.652 kb on + strand at 5682.656 kb on + strand at 5682.656 kb on + strand at 5682.656 kb on + strand at 5683.928 kb on + strand at 5684.069 kb on + strand at 5684.139 kb on + strand, within Psyr_4795 at 5684.139 kb on + strand, within Psyr_4795 at 5684.139 kb on + strand, within Psyr_4795 at 5684.139 kb on + strand, within Psyr_4795 at 5684.139 kb on + strand, within Psyr_4795 at 5684.139 kb on + strand, within Psyr_4795 at 5684.139 kb on + strand, within Psyr_4795 at 5684.139 kb on + strand, within Psyr_4795 at 5684.140 kb on - strand, within Psyr_4795 at 5684.140 kb on - strand, within Psyr_4795 at 5684.140 kb on - strand, within Psyr_4795 at 5684.140 kb on - strand, within Psyr_4795 at 5684.140 kb on - strand, within Psyr_4795 at 5684.140 kb on - strand, within Psyr_4795 at 5684.140 kb on - strand, within Psyr_4795 at 5684.270 kb on - strand, within Psyr_4795 at 5684.363 kb on + strand, within Psyr_4795 at 5684.363 kb on + strand, within Psyr_4795 at 5684.364 kb on - strand, within Psyr_4795 at 5684.364 kb on - strand, within Psyr_4795 at 5684.364 kb on - strand, within Psyr_4795 at 5684.379 kb on + strand, within Psyr_4795 at 5684.379 kb on + strand, within Psyr_4795 at 5684.388 kb on + strand, within Psyr_4795 at 5684.389 kb on - strand, within Psyr_4795 at 5684.389 kb on - strand, within Psyr_4795 at 5684.434 kb on + strand, within Psyr_4795 at 5684.434 kb on + strand, within Psyr_4795 at 5684.434 kb on + strand, within Psyr_4795 at 5684.434 kb on + strand, within Psyr_4795 at 5684.434 kb on + strand, within Psyr_4795 at 5684.434 kb on + strand, within Psyr_4795 at 5684.434 kb on + strand, within Psyr_4795 at 5684.434 kb on + strand, within Psyr_4795 at 5684.435 kb on - strand, within Psyr_4795 at 5684.435 kb on - strand, within Psyr_4795 at 5684.435 kb on - strand, within Psyr_4795 at 5684.435 kb on - strand, within Psyr_4795 at 5684.435 kb on - strand, within Psyr_4795 at 5684.435 kb on - strand, within Psyr_4795 at 5684.435 kb on - strand, within Psyr_4795 at 5684.545 kb on + strand, within Psyr_4795 at 5684.609 kb on + strand at 5684.609 kb on + strand at 5684.609 kb on + strand at 5684.660 kb on + strand at 5684.661 kb on - strand at 5684.661 kb on - strand at 5684.680 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic, sonication recovery; Green bean remove 5,682,055 + Psyr_4793 0.33 -0.4 5,682,055 + Psyr_4793 0.33 +2.2 5,682,055 + Psyr_4793 0.33 +3.4 5,682,055 + Psyr_4793 0.33 -0.8 5,682,055 + Psyr_4793 0.33 +1.0 5,682,055 + Psyr_4793 0.33 +3.0 5,682,171 + Psyr_4793 0.45 -0.2 5,682,171 + Psyr_4793 0.45 +0.7 5,682,238 + Psyr_4793 0.52 -2.0 5,682,238 + Psyr_4793 0.52 -2.5 5,682,490 + Psyr_4793 0.77 +0.1 5,682,490 + Psyr_4793 0.77 +3.7 5,682,490 + Psyr_4793 0.77 +1.4 5,682,490 + Psyr_4793 0.77 -0.5 5,682,490 + Psyr_4793 0.77 -2.1 5,682,490 + Psyr_4793 0.77 +1.7 5,682,527 + Psyr_4793 0.81 +0.1 5,682,527 + Psyr_4793 0.81 +2.0 5,682,622 + -0.9 5,682,642 + -0.8 5,682,642 + -0.0 5,682,642 + +0.1 5,682,642 + +1.6 5,682,642 + -0.5 5,682,642 + +1.5 5,682,642 + -0.3 5,682,646 + -1.6 5,682,646 + +0.1 5,682,646 + -0.4 5,682,646 + +0.2 5,682,646 + +1.3 5,682,646 + -2.9 5,682,646 + -3.1 5,682,646 + -1.2 5,682,646 + +0.9 5,682,646 + +2.1 5,682,652 + -1.1 5,682,652 + -0.6 5,682,652 + +2.4 5,682,652 + -1.4 5,682,652 + -2.2 5,682,652 + +2.1 5,682,652 + +2.2 5,682,652 + -0.7 5,682,652 + -2.6 5,682,652 + -2.8 5,682,656 + +1.7 5,682,656 + -0.4 5,682,656 + +1.8 5,683,928 + -1.6 5,684,069 + +1.0 5,684,139 + Psyr_4795 0.20 -1.8 5,684,139 + Psyr_4795 0.20 +0.2 5,684,139 + Psyr_4795 0.20 -1.0 5,684,139 + Psyr_4795 0.20 +1.3 5,684,139 + Psyr_4795 0.20 -0.5 5,684,139 + Psyr_4795 0.20 +0.5 5,684,139 + Psyr_4795 0.20 +1.9 5,684,139 + Psyr_4795 0.20 +3.2 5,684,140 - Psyr_4795 0.21 +1.5 5,684,140 - Psyr_4795 0.21 -1.5 5,684,140 - Psyr_4795 0.21 +0.6 5,684,140 - Psyr_4795 0.21 -2.2 5,684,140 - Psyr_4795 0.21 -2.7 5,684,140 - Psyr_4795 0.21 +1.4 5,684,140 - Psyr_4795 0.21 +1.2 5,684,270 - Psyr_4795 0.42 +2.3 5,684,363 + Psyr_4795 0.57 +1.0 5,684,363 + Psyr_4795 0.57 +0.0 5,684,364 - Psyr_4795 0.57 -1.8 5,684,364 - Psyr_4795 0.57 +0.7 5,684,364 - Psyr_4795 0.57 -1.2 5,684,379 + Psyr_4795 0.59 +1.2 5,684,379 + Psyr_4795 0.59 +2.4 5,684,388 + Psyr_4795 0.61 -2.7 5,684,389 - Psyr_4795 0.61 -1.6 5,684,389 - Psyr_4795 0.61 -0.3 5,684,434 + Psyr_4795 0.68 +3.0 5,684,434 + Psyr_4795 0.68 -0.6 5,684,434 + Psyr_4795 0.68 +1.2 5,684,434 + Psyr_4795 0.68 +0.7 5,684,434 + Psyr_4795 0.68 -0.8 5,684,434 + Psyr_4795 0.68 +1.4 5,684,434 + Psyr_4795 0.68 +0.3 5,684,434 + Psyr_4795 0.68 -0.8 5,684,435 - Psyr_4795 0.68 -1.0 5,684,435 - Psyr_4795 0.68 +5.8 5,684,435 - Psyr_4795 0.68 -1.1 5,684,435 - Psyr_4795 0.68 +0.6 5,684,435 - Psyr_4795 0.68 -2.9 5,684,435 - Psyr_4795 0.68 -1.5 5,684,435 - Psyr_4795 0.68 +0.6 5,684,545 + Psyr_4795 0.86 +1.9 5,684,609 + +1.9 5,684,609 + +0.6 5,684,609 + +0.8 5,684,660 + -2.3 5,684,661 - -2.1 5,684,661 - -2.1 5,684,680 - -2.3
Or see this region's nucleotide sequence