Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4520

Experiment: apoplastic, sonication recovery; Green bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic, sonication recovery; Green bean
5,383,605	+		Psyr_4519	0.36	-1.2
5,383,605	+		Psyr_4519	0.36	+2.8
5,383,606	-		Psyr_4519	0.36	+0.6
5,383,606	-		Psyr_4519	0.36	+0.6
5,383,606	-		Psyr_4519	0.36	-1.4
5,383,675	+		Psyr_4519	0.41	-0.0
5,383,675	+		Psyr_4519	0.41	-2.0
5,383,675	+		Psyr_4519	0.41	-0.7
5,383,675	+		Psyr_4519	0.41	+1.3
5,383,675	+		Psyr_4519	0.41	-1.7
5,383,675	+		Psyr_4519	0.41	-2.2
5,383,675	+		Psyr_4519	0.41	-2.6
5,383,675	+		Psyr_4519	0.41	-1.7
5,383,676	-		Psyr_4519	0.41	+1.0
5,383,676	-		Psyr_4519	0.41	+0.5
5,383,676	-		Psyr_4519	0.41	+1.8
5,383,676	-		Psyr_4519	0.41	-0.6
5,383,726	+		Psyr_4519	0.45	+1.3
5,383,726	+		Psyr_4519	0.45	+0.8
5,383,909	-		Psyr_4519	0.58	-1.7
5,383,936	+		Psyr_4519	0.60	+2.8
5,383,936	+		Psyr_4519	0.60	-1.8
5,384,162	+		Psyr_4519	0.76	+0.1
5,384,162	+		Psyr_4519	0.76	-1.2
5,384,242	+		Psyr_4519	0.82	-2.6
5,384,242	+		Psyr_4519	0.82	-1.8
5,384,243	-		Psyr_4519	0.82	+0.5
5,384,243	-		Psyr_4519	0.82	-0.7
5,384,243	-		Psyr_4519	0.82	-2.4
5,384,243	-		Psyr_4519	0.82	-4.0
5,384,317	+		Psyr_4519	0.87	-0.2
5,384,375	-				-1.9
5,384,471	+				-1.4
5,384,472	-				-1.0
5,384,472	-				-0.2
5,384,500	+				-0.7
5,384,500	+				-1.6
5,384,527	+				-1.4
5,384,528	-				+1.2
5,384,544	+				-0.3
5,384,544	+				-2.2
5,384,544	+				-1.6
5,384,544	+				-1.2
5,384,544	+				+0.2
5,384,544	+				+2.3
5,384,545	-				+0.5
5,384,545	-				+0.2
5,384,553	+				-0.6
5,384,553	+				-0.2
5,384,554	-				-3.2
5,384,554	-				+2.2
5,384,554	-				+0.3
5,384,554	-				-0.0
5,384,554	-				+0.2
5,384,554	-				+1.6
5,384,590	+				-2.1
5,384,590	+				+0.5
5,384,590	+				-0.6
5,384,590	+				-0.2
5,384,591	-				-1.0
5,384,591	-				+0.5
5,384,591	-				-0.3
5,384,591	-				-0.2
5,384,591	-				-2.2
5,384,591	-				+3.1
5,384,641	+				-2.6
5,384,641	+				-2.6
5,384,642	-				+1.5
5,384,642	-				-2.1
5,384,673	-				+1.9
5,384,673	-				+0.6
5,384,673	-				-0.7
5,384,760	+				+2.1
5,384,761	-				+1.0
5,384,802	+				-0.6
5,384,891	+		Psyr_4520	0.11	-2.0
5,384,891	+		Psyr_4520	0.11	+2.8
5,384,891	+		Psyr_4520	0.11	+1.6
5,384,891	+		Psyr_4520	0.11	+0.9
5,384,892	-		Psyr_4520	0.11	-0.6
5,384,892	-		Psyr_4520	0.11	-1.0
5,384,892	-		Psyr_4520	0.11	+0.8
5,384,892	-		Psyr_4520	0.11	-0.4
5,384,900	+		Psyr_4520	0.11	-1.6
5,384,901	-		Psyr_4520	0.11	-2.7
5,384,937	+		Psyr_4520	0.13	+1.2
5,384,943	+		Psyr_4520	0.13	+0.4
5,384,944	-		Psyr_4520	0.13	+0.2
5,384,944	-		Psyr_4520	0.13	-0.6
5,384,944	-		Psyr_4520	0.13	+0.5
5,384,944	-		Psyr_4520	0.13	+0.4
5,384,958	+		Psyr_4520	0.13	+0.4
5,384,958	+		Psyr_4520	0.13	-1.4
5,384,959	-		Psyr_4520	0.13	-0.9
5,384,959	-		Psyr_4520	0.13	-1.2
5,384,997	-		Psyr_4520	0.15	-2.0
5,384,997	-		Psyr_4520	0.15	+2.6
5,385,386	+		Psyr_4520	0.28	+1.8
5,385,387	-		Psyr_4520	0.28	+0.0
5,385,542	-		Psyr_4520	0.34	-1.4
5,385,560	+		Psyr_4520	0.34	-2.2
5,385,560	+		Psyr_4520	0.34	+3.1
5,385,561	-		Psyr_4520	0.34	-1.4
5,385,561	-		Psyr_4520	0.34	+0.9
5,385,567	+		Psyr_4520	0.34	-2.6
5,385,568	-		Psyr_4520	0.34	+1.2
5,385,568	-		Psyr_4520	0.34	-2.2
5,385,568	-		Psyr_4520	0.34	+1.2
5,385,568	-		Psyr_4520	0.34	+0.1
5,385,568	-		Psyr_4520	0.34	-0.7
5,385,568	-		Psyr_4520	0.34	-0.4
5,385,570	+		Psyr_4520	0.35	-0.6
5,385,570	+		Psyr_4520	0.35	-2.1
5,385,570	+		Psyr_4520	0.35	-0.1
5,385,570	+		Psyr_4520	0.35	-0.6
5,385,571	-		Psyr_4520	0.35	-1.2
5,385,571	-		Psyr_4520	0.35	+1.2
5,385,571	-		Psyr_4520	0.35	-2.2
5,385,571	-		Psyr_4520	0.35	+1.3
5,385,945	+		Psyr_4520	0.48	+0.4
5,385,945	+		Psyr_4520	0.48	+1.6
5,385,945	+		Psyr_4520	0.48	-0.2
5,385,945	+		Psyr_4520	0.48	+4.0
5,385,946	-		Psyr_4520	0.48	-1.0
5,385,946	-		Psyr_4520	0.48	-0.6
5,385,946	-		Psyr_4520	0.48	+0.4
5,386,050	+		Psyr_4520	0.51	-0.6
5,386,051	-		Psyr_4520	0.51	-2.8
5,386,051	-		Psyr_4520	0.51	+1.7
5,386,149	+		Psyr_4520	0.55	-0.6
5,386,149	+		Psyr_4520	0.55	-2.6
5,386,149	+		Psyr_4520	0.55	-1.3
5,386,149	+		Psyr_4520	0.55	+0.6
5,386,149	+		Psyr_4520	0.55	+0.4
5,386,149	+		Psyr_4520	0.55	+1.8
5,386,149	+		Psyr_4520	0.55	-1.0
5,386,149	+		Psyr_4520	0.55	-1.2
5,386,149	+		Psyr_4520	0.55	+0.8
5,386,149	+		Psyr_4520	0.55	-2.9
5,386,149	+		Psyr_4520	0.55	+2.9
5,386,149	+		Psyr_4520	0.55	-0.1
5,386,149	+		Psyr_4520	0.55	-2.5
5,386,149	+		Psyr_4520	0.55	+2.0
5,386,149	+		Psyr_4520	0.55	+1.7
5,386,149	+		Psyr_4520	0.55	-1.9
5,386,150	-		Psyr_4520	0.55	-0.3
5,386,150	-		Psyr_4520	0.55	+0.1
5,386,150	-		Psyr_4520	0.55	-2.6
5,386,150	-		Psyr_4520	0.55	-0.1
5,386,150	-		Psyr_4520	0.55	+1.9
5,386,150	-		Psyr_4520	0.55	+1.4
5,386,150	-		Psyr_4520	0.55	+1.8
5,386,150	-		Psyr_4520	0.55	-0.6
5,386,150	-		Psyr_4520	0.55	-0.4
5,386,150	-		Psyr_4520	0.55	+1.0
5,386,150	-		Psyr_4520	0.55	+1.2
5,386,150	-		Psyr_4520	0.55	-1.0
5,386,150	-		Psyr_4520	0.55	+2.1
5,386,150	-		Psyr_4520	0.55	+0.9
5,386,150	-		Psyr_4520	0.55	+1.8
5,386,150	-		Psyr_4520	0.55	-1.2
5,386,150	-		Psyr_4520	0.55	+0.8
5,386,150	-		Psyr_4520	0.55	-2.3
5,386,150	-		Psyr_4520	0.55	+1.2
5,386,150	-		Psyr_4520	0.55	-3.0
5,386,150	-		Psyr_4520	0.55	-2.6
5,386,150	-		Psyr_4520	0.55	-1.4
5,386,150	-		Psyr_4520	0.55	+1.7
5,386,238	+		Psyr_4520	0.58	-1.9
5,386,238	+		Psyr_4520	0.58	+1.8
5,386,287	+		Psyr_4520	0.59	-1.7
5,386,287	+		Psyr_4520	0.59	-1.0
5,386,287	+		Psyr_4520	0.59	+4.7
5,386,288	-		Psyr_4520	0.59	+4.7
5,386,288	-		Psyr_4520	0.59	-0.5
5,386,288	-		Psyr_4520	0.59	-3.1
5,386,288	-		Psyr_4520	0.59	-0.2
5,386,331	+		Psyr_4520	0.61	+2.6
5,386,331	+		Psyr_4520	0.61	-0.6
5,386,331	+		Psyr_4520	0.61	-0.7
5,386,331	+		Psyr_4520	0.61	+0.7
5,386,332	-		Psyr_4520	0.61	-0.6
5,386,332	-		Psyr_4520	0.61	-0.0
5,386,332	-		Psyr_4520	0.61	-2.1
5,386,347	-		Psyr_4520	0.61	-3.8
5,386,392	+		Psyr_4520	0.63	-0.6
5,386,392	+		Psyr_4520	0.63	+1.8
5,386,392	+		Psyr_4520	0.63	+1.3
5,386,392	+		Psyr_4520	0.63	-2.9
5,386,392	+		Psyr_4520	0.63	-1.6
5,386,392	+		Psyr_4520	0.63	-1.9
5,386,392	+		Psyr_4520	0.63	-0.4
5,386,392	+		Psyr_4520	0.63	+0.2
5,386,393	-		Psyr_4520	0.63	-1.2
5,386,393	-		Psyr_4520	0.63	-1.7
5,386,393	-		Psyr_4520	0.63	-0.3
5,386,731	+		Psyr_4520	0.75	+1.6
5,386,732	-		Psyr_4520	0.75	-1.4
5,386,899	+		Psyr_4520	0.81	-1.5
5,386,899	+		Psyr_4520	0.81	-2.4
5,386,899	+		Psyr_4520	0.81	-1.7
5,386,899	+		Psyr_4520	0.81	-1.3
5,386,899	+		Psyr_4520	0.81	-1.0
5,386,899	+		Psyr_4520	0.81	-0.1
5,386,899	+		Psyr_4520	0.81	-1.7
5,386,899	+		Psyr_4520	0.81	+2.2
5,386,899	+		Psyr_4520	0.81	-0.6
5,386,899	+		Psyr_4520	0.81	-1.2
5,386,899	+		Psyr_4520	0.81	+0.1
5,386,899	+		Psyr_4520	0.81	-1.0
5,386,899	+		Psyr_4520	0.81	-1.6
5,386,900	-		Psyr_4520	0.81	+1.8
5,386,900	-		Psyr_4520	0.81	-1.6
5,386,900	-		Psyr_4520	0.81	-0.9
5,386,900	-		Psyr_4520	0.81	+0.3
5,386,900	-		Psyr_4520	0.81	-2.3
5,386,900	-		Psyr_4520	0.81	-0.3
5,386,900	-		Psyr_4520	0.81	+0.8
5,386,900	-		Psyr_4520	0.81	+1.4
5,386,900	-		Psyr_4520	0.81	-2.0
5,386,900	-		Psyr_4520	0.81	-1.0
5,386,900	-		Psyr_4520	0.81	+0.5
5,386,900	-		Psyr_4520	0.81	-0.3
5,386,900	-		Psyr_4520	0.81	-0.9
5,386,900	-		Psyr_4520	0.81	+1.8
5,386,932	+		Psyr_4520	0.82	-0.2
5,386,959	+		Psyr_4520	0.83	-1.9
5,386,959	+		Psyr_4520	0.83	-2.0
5,386,959	+		Psyr_4520	0.83	-0.7
5,386,959	+		Psyr_4520	0.83	-0.7
5,386,959	+		Psyr_4520	0.83	+2.5
5,386,959	+		Psyr_4520	0.83	+1.4
5,386,959	+		Psyr_4520	0.83	-1.4
5,386,959	+		Psyr_4520	0.83	+0.3
5,386,959	+		Psyr_4520	0.83	+2.4
5,386,959	+		Psyr_4520	0.83	-0.7
5,386,959	+		Psyr_4520	0.83	+1.5
5,386,959	+		Psyr_4520	0.83	-0.1
5,386,960	-		Psyr_4520	0.83	-1.2
5,386,960	-		Psyr_4520	0.83	-1.0
5,386,960	-		Psyr_4520	0.83	-2.2
5,387,068	+		Psyr_4520	0.86	-0.2
5,387,068	+		Psyr_4520	0.86	+0.1
5,387,069	-		Psyr_4520	0.86	+0.1
5,387,069	-		Psyr_4520	0.86	-0.6
5,387,069	-		Psyr_4520	0.86	-1.8
5,387,069	-		Psyr_4520	0.86	-1.0
5,387,069	-				+0.2
5,387,069	-		Psyr_4520	0.86	-0.8
5,387,079	+		Psyr_4520	0.87	+0.6
5,387,079	+		Psyr_4520	0.87	-2.8
5,387,080	-		Psyr_4520	0.87	+2.1
5,387,080	-		Psyr_4520	0.87	+0.2
5,387,080	-		Psyr_4520	0.87	-1.0
5,387,080	-		Psyr_4520	0.87	-0.3
5,387,080	-		Psyr_4520	0.87	+0.7
5,387,081	+		Psyr_4520	0.87	-1.6
5,387,082	-		Psyr_4520	0.87	-1.0
5,387,181	+				-1.4
5,387,181	+				-0.2
5,387,181	+				-1.7
5,387,181	+				+1.6
5,387,181	+				+1.2
5,387,181	+				+0.5
5,387,181	+				-1.0
5,387,181	+				-2.6
5,387,182	-				-2.8
5,387,182	-				-2.6
5,387,182	-				-2.8
5,387,182	-				+1.7
5,387,182	-				-1.6
5,387,182	-				+2.2
5,387,242	+				-3.1
5,387,242	+				-0.8
5,387,242	+				+0.8
5,387,242	+				+0.4
5,387,242	+				+0.6
5,387,242	+				-2.0
5,387,242	+				-1.6
5,387,242	+				+0.6
5,387,242	+				-2.1
5,387,242	+				-1.2
5,387,242	+				-1.1
5,387,242	+				-2.0
5,387,242	+				-2.0
5,387,242	+				+0.8
5,387,242	+				+2.0
5,387,242	+				-0.8
5,387,242	+				+2.4
5,387,242	+				+1.8
5,387,242	+				-1.8
5,387,242	+				+1.4
5,387,242	+				+3.4
5,387,242	+				+2.6
5,387,243	-				+1.9
5,387,243	-				-0.2
5,387,243	-				-0.5
5,387,243	-				-1.3
5,387,243	-				+0.8
5,387,243	-				-0.6
5,387,243	-				-0.6
5,387,243	-				-0.4
5,387,243	-				-1.2
5,387,413	-				-1.3
5,387,413	-				-0.6
5,387,424	+				-0.9
5,387,503	+				-0.2
5,387,504	-				-1.5
5,387,504	-				-0.2
5,387,504	-				+1.9
5,387,504	-				-1.3
5,387,573	+				-2.5
5,387,573	+				-1.8
5,387,573	+				+0.3
5,387,573	+				-0.8
5,387,573	+				-0.8
5,387,625	-		Psyr_4521	0.15	-1.8
5,387,625	-		Psyr_4521	0.15	-1.6
5,387,625	-		Psyr_4521	0.15	-2.7
5,387,625	-		Psyr_4521	0.15	+0.2
5,387,628	+		Psyr_4521	0.16	-1.4
5,387,628	+		Psyr_4521	0.16	+0.6
5,387,628	+		Psyr_4521	0.16	-1.1
5,387,628	+		Psyr_4521	0.16	-3.7
5,387,628	+		Psyr_4521	0.16	+2.8
5,387,628	+		Psyr_4521	0.16	+0.9
5,387,628	+		Psyr_4521	0.16	+2.4
5,387,628	+		Psyr_4521	0.16	-0.6
5,387,628	+		Psyr_4521	0.16	-0.8
5,387,629	-		Psyr_4521	0.16	+2.8
5,387,629	-		Psyr_4521	0.16	-1.5
5,387,629	-		Psyr_4521	0.16	+0.8
5,387,682	-		Psyr_4521	0.28	-1.7
5,387,682	-		Psyr_4521	0.28	-0.2
5,387,682	-		Psyr_4521	0.28	+1.1
5,387,727	+		Psyr_4521	0.37	-1.0
5,387,727	+		Psyr_4521	0.37	-2.2
5,387,727	+		Psyr_4521	0.37	+2.2
5,387,727	+		Psyr_4521	0.37	-0.6
5,387,728	-		Psyr_4521	0.37	+0.9
5,387,728	-		Psyr_4521	0.37	+2.7
5,387,728	-		Psyr_4521	0.37	+0.7
5,387,731	+		Psyr_4521	0.38	-2.4
5,387,731	+		Psyr_4521	0.38	+1.2
5,387,731	+		Psyr_4521	0.38	-0.8
5,387,731	+		Psyr_4521	0.38	+0.2
5,387,731	+		Psyr_4521	0.38	+0.2
5,387,731	+		Psyr_4521	0.38	-2.5
5,387,731	+		Psyr_4521	0.38	-1.2
5,387,731	+		Psyr_4521	0.38	+0.2
5,387,731	+		Psyr_4521	0.38	+2.5
5,387,731	+		Psyr_4521	0.38	-2.7
5,387,731	+		Psyr_4521	0.38	-0.4
5,387,732	-		Psyr_4521	0.38	+0.1
5,387,732	-		Psyr_4521	0.38	+0.8
5,387,732	-		Psyr_4521	0.38	+0.3
5,387,732	-		Psyr_4521	0.38	-1.4
5,387,732	-		Psyr_4521	0.38	+0.4
5,387,732	-		Psyr_4521	0.38	+1.9
5,387,732	-		Psyr_4521	0.38	+1.0
5,387,738	+		Psyr_4521	0.40	-1.2
5,387,738	+		Psyr_4521	0.40	+3.1
5,387,739	-		Psyr_4521	0.40	-0.2
5,387,890	-		Psyr_4521	0.72	-0.7
5,387,890	-		Psyr_4521	0.72	-0.2
5,387,897	+		Psyr_4521	0.74	+1.8
5,387,924	+		Psyr_4521	0.80	+3.2
5,387,924	+		Psyr_4521	0.80	-0.6
5,387,924	+		Psyr_4521	0.80	-1.3
5,387,924	+		Psyr_4521	0.80	-1.4
5,387,924	+		Psyr_4521	0.80	+0.5
5,387,925	-		Psyr_4521	0.80	+4.6
5,387,925	-		Psyr_4521	0.80	+1.1
5,387,925	-		Psyr_4521	0.80	+0.0
5,387,946	-		Psyr_4521	0.84	-1.0
5,387,946	-		Psyr_4521	0.84	+0.1
5,387,946	-		Psyr_4521	0.84	+1.0
5,387,946	-		Psyr_4521	0.84	-1.2
5,387,999	-				+2.4
5,387,999	-				-2.5
5,388,047	-				+2.5
5,388,186	-				-0.1
5,388,186	-				-2.3
5,388,234	+				-1.7
5,388,235	-				-0.4
5,388,296	-				+1.4
5,388,360	+		Psyr_4522	0.13	+0.6
5,388,361	-		Psyr_4522	0.13	-1.0
5,388,361	-		Psyr_4522	0.13	-0.9
5,388,363	+		Psyr_4522	0.13	-0.6
5,388,363	+		Psyr_4522	0.13	+1.1
5,388,363	+		Psyr_4522	0.13	-2.9
5,388,364	-		Psyr_4522	0.13	-3.2
5,388,364	-		Psyr_4522	0.13	-1.0
5,388,364	-		Psyr_4522	0.13	-1.1
5,388,375	-		Psyr_4522	0.14	-1.1