Experiment: apoplastic, sonication recovery; Green bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4388 and Psyr_4389 are separated by 42 nucleotides Psyr_4389 and Psyr_4390 are separated by 331 nucleotides Psyr_4390 and Psyr_4391 are separated by 20 nucleotides
Psyr_4388: Psyr_4388 - Response regulator receiver, at 5,250,760 to 5,251,167
_4388
Psyr_4389: Psyr_4389 - Flp/Fap pilin component, at 5,251,210 to 5,251,416
_4389
Psyr_4390: Psyr_4390 - Flp pilus assembly CpaB, at 5,251,748 to 5,252,707
_4390
Psyr_4391: Psyr_4391 - type II and III secretion system protein, at 5,252,728 to 5,253,978
_4391
Position (kb) 5251
5252
5253 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 5250.827 kb on + strand, within Psyr_4388 at 5250.827 kb on + strand, within Psyr_4388 at 5250.827 kb on + strand, within Psyr_4388 at 5250.827 kb on + strand, within Psyr_4388 at 5250.827 kb on + strand, within Psyr_4388 at 5250.828 kb on - strand, within Psyr_4388 at 5250.828 kb on - strand, within Psyr_4388 at 5250.828 kb on - strand, within Psyr_4388 at 5251.173 kb on + strand at 5251.200 kb on + strand at 5251.200 kb on + strand at 5251.200 kb on + strand at 5251.200 kb on + strand at 5251.200 kb on + strand at 5251.201 kb on - strand at 5251.201 kb on - strand at 5251.201 kb on - strand at 5251.204 kb on - strand at 5251.211 kb on + strand at 5251.211 kb on + strand at 5251.211 kb on + strand at 5251.211 kb on + strand at 5251.211 kb on + strand at 5251.212 kb on - strand at 5251.212 kb on - strand at 5251.212 kb on - strand at 5251.216 kb on + strand at 5251.221 kb on + strand at 5251.221 kb on + strand at 5251.224 kb on + strand at 5251.245 kb on + strand, within Psyr_4389 at 5251.245 kb on + strand, within Psyr_4389 at 5251.246 kb on - strand, within Psyr_4389 at 5251.246 kb on - strand, within Psyr_4389 at 5251.246 kb on - strand, within Psyr_4389 at 5251.246 kb on - strand, within Psyr_4389 at 5251.300 kb on + strand, within Psyr_4389 at 5251.318 kb on + strand, within Psyr_4389 at 5251.331 kb on + strand, within Psyr_4389 at 5251.385 kb on + strand, within Psyr_4389 at 5251.385 kb on + strand, within Psyr_4389 at 5251.385 kb on + strand, within Psyr_4389 at 5251.385 kb on + strand, within Psyr_4389 at 5251.386 kb on - strand, within Psyr_4389 at 5251.386 kb on - strand, within Psyr_4389 at 5251.386 kb on - strand, within Psyr_4389 at 5251.386 kb on - strand, within Psyr_4389 at 5251.386 kb on - strand, within Psyr_4389 at 5251.386 kb on - strand, within Psyr_4389 at 5251.397 kb on + strand at 5251.397 kb on + strand at 5251.397 kb on + strand at 5251.397 kb on + strand at 5251.397 kb on + strand at 5251.397 kb on + strand at 5251.397 kb on + strand at 5251.398 kb on - strand at 5251.398 kb on - strand at 5251.398 kb on - strand at 5251.398 kb on - strand at 5251.398 kb on - strand at 5251.398 kb on - strand at 5251.398 kb on - strand at 5251.465 kb on + strand at 5251.465 kb on + strand at 5251.465 kb on + strand at 5251.465 kb on + strand at 5251.465 kb on + strand at 5251.465 kb on + strand at 5251.465 kb on + strand at 5251.466 kb on - strand at 5251.466 kb on - strand at 5251.466 kb on - strand at 5251.466 kb on - strand at 5251.466 kb on - strand at 5251.466 kb on - strand at 5251.466 kb on - strand at 5251.467 kb on + strand at 5251.467 kb on + strand at 5251.468 kb on - strand at 5251.468 kb on - strand at 5251.468 kb on - strand at 5251.468 kb on - strand at 5251.468 kb on - strand at 5251.468 kb on - strand at 5251.481 kb on - strand at 5251.541 kb on + strand at 5251.581 kb on - strand at 5251.606 kb on - strand at 5251.608 kb on - strand at 5251.642 kb on + strand at 5251.642 kb on + strand at 5251.642 kb on + strand at 5251.653 kb on - strand at 5251.653 kb on - strand at 5251.676 kb on + strand at 5251.679 kb on + strand at 5251.679 kb on + strand at 5251.679 kb on + strand at 5251.680 kb on - strand at 5251.680 kb on - strand at 5251.680 kb on - strand at 5251.811 kb on + strand at 5251.811 kb on + strand at 5251.812 kb on - strand at 5251.973 kb on + strand, within Psyr_4390 at 5251.973 kb on + strand, within Psyr_4390 at 5251.973 kb on + strand, within Psyr_4390 at 5251.974 kb on - strand, within Psyr_4390 at 5251.974 kb on - strand, within Psyr_4390 at 5252.222 kb on + strand, within Psyr_4390 at 5252.223 kb on - strand, within Psyr_4390 at 5252.232 kb on + strand, within Psyr_4390 at 5252.232 kb on + strand, within Psyr_4390 at 5252.232 kb on + strand, within Psyr_4390 at 5252.232 kb on + strand, within Psyr_4390 at 5252.232 kb on + strand, within Psyr_4390 at 5252.233 kb on - strand, within Psyr_4390 at 5252.233 kb on - strand, within Psyr_4390 at 5252.233 kb on - strand, within Psyr_4390 at 5252.233 kb on - strand, within Psyr_4390 at 5252.233 kb on - strand, within Psyr_4390 at 5252.241 kb on - strand, within Psyr_4390 at 5252.241 kb on - strand, within Psyr_4390 at 5252.241 kb on - strand, within Psyr_4390 at 5252.241 kb on - strand, within Psyr_4390 at 5252.241 kb on - strand, within Psyr_4390 at 5252.522 kb on + strand, within Psyr_4390 at 5252.650 kb on + strand at 5252.651 kb on - strand at 5252.651 kb on - strand at 5252.651 kb on - strand at 5252.651 kb on - strand at 5252.751 kb on + strand at 5252.751 kb on + strand at 5252.751 kb on + strand at 5252.752 kb on - strand at 5252.752 kb on - strand at 5252.753 kb on + strand at 5252.753 kb on + strand at 5252.753 kb on + strand at 5252.753 kb on + strand at 5252.753 kb on + strand at 5252.753 kb on + strand at 5252.753 kb on + strand at 5252.754 kb on - strand at 5252.754 kb on - strand at 5252.754 kb on - strand at 5253.183 kb on + strand, within Psyr_4391 at 5253.386 kb on - strand, within Psyr_4391 at 5253.386 kb on - strand, within Psyr_4391 at 5253.490 kb on - strand, within Psyr_4391 at 5253.502 kb on + strand, within Psyr_4391 at 5253.502 kb on + strand, within Psyr_4391 at 5253.502 kb on + strand, within Psyr_4391 at 5253.502 kb on + strand, within Psyr_4391 at 5253.503 kb on - strand, within Psyr_4391
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic, sonication recovery; Green bean remove 5,250,827 + Psyr_4388 0.16 +2.2 5,250,827 + Psyr_4388 0.16 -1.4 5,250,827 + Psyr_4388 0.16 -2.5 5,250,827 + Psyr_4388 0.16 -1.9 5,250,827 + Psyr_4388 0.16 -1.0 5,250,828 - Psyr_4388 0.17 -0.9 5,250,828 - Psyr_4388 0.17 -1.1 5,250,828 - Psyr_4388 0.17 +1.3 5,251,173 + -1.7 5,251,200 + -2.3 5,251,200 + -1.7 5,251,200 + -2.8 5,251,200 + -1.0 5,251,200 + -1.9 5,251,201 - +1.4 5,251,201 - +2.2 5,251,201 - -2.5 5,251,204 - +2.6 5,251,211 + -1.5 5,251,211 + -1.5 5,251,211 + +1.1 5,251,211 + -1.4 5,251,211 + -1.9 5,251,212 - +0.1 5,251,212 - -2.0 5,251,212 - +2.0 5,251,216 + -0.9 5,251,221 + -3.1 5,251,221 + +0.5 5,251,224 + -2.1 5,251,245 + Psyr_4389 0.17 +2.1 5,251,245 + Psyr_4389 0.17 +3.5 5,251,246 - Psyr_4389 0.17 +0.5 5,251,246 - Psyr_4389 0.17 -0.7 5,251,246 - Psyr_4389 0.17 +1.0 5,251,246 - Psyr_4389 0.17 +1.4 5,251,300 + Psyr_4389 0.43 -0.9 5,251,318 + Psyr_4389 0.52 -1.5 5,251,331 + Psyr_4389 0.58 -1.6 5,251,385 + Psyr_4389 0.85 +3.1 5,251,385 + Psyr_4389 0.85 -2.2 5,251,385 + Psyr_4389 0.85 -0.6 5,251,385 + Psyr_4389 0.85 +0.5 5,251,386 - Psyr_4389 0.85 -2.0 5,251,386 - Psyr_4389 0.85 +0.7 5,251,386 - Psyr_4389 0.85 -0.9 5,251,386 - Psyr_4389 0.85 -1.8 5,251,386 - Psyr_4389 0.85 +0.2 5,251,386 - Psyr_4389 0.85 -1.5 5,251,397 + -3.1 5,251,397 + +1.6 5,251,397 + -2.9 5,251,397 + -1.7 5,251,397 + +0.8 5,251,397 + -0.3 5,251,397 + -1.3 5,251,398 - -1.2 5,251,398 - +1.4 5,251,398 - -1.1 5,251,398 - -1.0 5,251,398 - -2.8 5,251,398 - +3.4 5,251,398 - +1.3 5,251,465 + -0.6 5,251,465 + -0.3 5,251,465 + -1.7 5,251,465 + +0.7 5,251,465 + +1.3 5,251,465 + -0.3 5,251,465 + -0.7 5,251,466 - +2.3 5,251,466 - -1.1 5,251,466 - +2.2 5,251,466 - +0.6 5,251,466 - -1.7 5,251,466 - +0.7 5,251,466 - -2.6 5,251,467 + -2.3 5,251,467 + +2.5 5,251,468 - -0.3 5,251,468 - +1.9 5,251,468 - +0.3 5,251,468 - +1.1 5,251,468 - -0.9 5,251,468 - -0.6 5,251,481 - -1.4 5,251,541 + -2.1 5,251,581 - -0.8 5,251,606 - +0.5 5,251,608 - +0.2 5,251,642 + -0.4 5,251,642 + -3.2 5,251,642 + -0.5 5,251,653 - +0.1 5,251,653 - +0.1 5,251,676 + +0.9 5,251,679 + +1.5 5,251,679 + -1.1 5,251,679 + -1.5 5,251,680 - +2.5 5,251,680 - -1.3 5,251,680 - +3.8 5,251,811 + +1.4 5,251,811 + +0.6 5,251,812 - +0.9 5,251,973 + Psyr_4390 0.23 -0.9 5,251,973 + Psyr_4390 0.23 -0.3 5,251,973 + Psyr_4390 0.23 +0.8 5,251,974 - Psyr_4390 0.24 -0.9 5,251,974 - Psyr_4390 0.24 +1.1 5,252,222 + Psyr_4390 0.49 -1.9 5,252,223 - Psyr_4390 0.49 +3.2 5,252,232 + Psyr_4390 0.50 -1.1 5,252,232 + Psyr_4390 0.50 -0.8 5,252,232 + Psyr_4390 0.50 -0.8 5,252,232 + Psyr_4390 0.50 -1.0 5,252,232 + Psyr_4390 0.50 +1.3 5,252,233 - Psyr_4390 0.51 +0.7 5,252,233 - Psyr_4390 0.51 -2.3 5,252,233 - Psyr_4390 0.51 -1.7 5,252,233 - Psyr_4390 0.51 +1.1 5,252,233 - Psyr_4390 0.51 -0.3 5,252,241 - Psyr_4390 0.51 -0.0 5,252,241 - Psyr_4390 0.51 +0.5 5,252,241 - Psyr_4390 0.51 -1.7 5,252,241 - Psyr_4390 0.51 -2.2 5,252,241 - Psyr_4390 0.51 -2.6 5,252,522 + Psyr_4390 0.81 -1.0 5,252,650 + +0.3 5,252,651 - -0.3 5,252,651 - -0.3 5,252,651 - -2.3 5,252,651 - +0.8 5,252,751 + -1.5 5,252,751 + +1.9 5,252,751 + -0.5 5,252,752 - -0.9 5,252,752 - -2.5 5,252,753 + -2.7 5,252,753 + -1.8 5,252,753 + -1.5 5,252,753 + -2.4 5,252,753 + -1.3 5,252,753 + +1.5 5,252,753 + +0.8 5,252,754 - +1.2 5,252,754 - -1.1 5,252,754 - +0.2 5,253,183 + Psyr_4391 0.36 +0.7 5,253,386 - Psyr_4391 0.53 +2.2 5,253,386 - Psyr_4391 0.53 +2.5 5,253,490 - Psyr_4391 0.61 +0.5 5,253,502 + Psyr_4391 0.62 +0.1 5,253,502 + Psyr_4391 0.62 +2.5 5,253,502 + Psyr_4391 0.62 +0.8 5,253,502 + Psyr_4391 0.62 +0.2 5,253,503 - Psyr_4391 0.62 -0.3
Or see this region's nucleotide sequence