Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4325

Experiment: apoplastic, sonication recovery; Green bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic, sonication recovery; Green bean
5,176,389	+				+0.2
5,176,396	-				-0.6
5,176,407	-				+1.2
5,176,419	-				+2.1
5,176,422	-				+0.1
5,176,422	-				-2.3
5,176,422	-				-0.6
5,176,476	+				+0.2
5,176,538	+		Psyr_4324	0.10	-1.1
5,176,538	+		Psyr_4324	0.10	-1.1
5,176,539	-		Psyr_4324	0.11	-0.4
5,176,569	+		Psyr_4324	0.15	+1.4
5,176,569	+		Psyr_4324	0.15	+0.1
5,176,569	+		Psyr_4324	0.15	-2.1
5,176,569	+		Psyr_4324	0.15	+0.0
5,176,569	+		Psyr_4324	0.15	-0.7
5,176,569	+		Psyr_4324	0.15	+0.3
5,176,569	+		Psyr_4324	0.15	-2.8
5,176,570	-		Psyr_4324	0.15	-3.1
5,176,570	-		Psyr_4324	0.15	+1.5
5,176,570	-		Psyr_4324	0.15	-0.5
5,176,629	-		Psyr_4324	0.23	+1.4
5,176,652	+		Psyr_4324	0.27	-0.6
5,176,661	+		Psyr_4324	0.28	-2.5
5,176,681	-		Psyr_4324	0.31	+0.7
5,176,681	-		Psyr_4324	0.31	+1.1
5,176,681	-		Psyr_4324	0.31	+2.5
5,176,694	+		Psyr_4324	0.33	+0.8
5,176,695	-		Psyr_4324	0.33	-1.9
5,176,696	+		Psyr_4324	0.33	+0.1
5,176,696	+		Psyr_4324	0.33	-0.7
5,176,696	+		Psyr_4324	0.33	-0.9
5,176,697	-		Psyr_4324	0.33	+0.1
5,176,697	-		Psyr_4324	0.33	+1.4
5,176,697	-		Psyr_4324	0.33	-2.5
5,176,731	+		Psyr_4324	0.38	+1.5
5,176,731	+		Psyr_4324	0.38	-1.6
5,176,731	+		Psyr_4324	0.38	-2.3
5,176,731	+		Psyr_4324	0.38	-3.7
5,176,731	+		Psyr_4324	0.38	+1.0
5,176,758	-		Psyr_4324	0.42	-1.7
5,176,770	+		Psyr_4324	0.43	+0.8
5,176,770	+		Psyr_4324	0.43	-0.6
5,176,770	+		Psyr_4324	0.43	-1.1
5,176,770	+		Psyr_4324	0.43	+2.2
5,176,770	+		Psyr_4324	0.43	+1.2
5,176,770	+		Psyr_4324	0.43	-1.4
5,176,771	-		Psyr_4324	0.44	+0.2
5,176,771	-		Psyr_4324	0.44	-1.7
5,176,771	-		Psyr_4324	0.44	+1.3
5,176,771	-		Psyr_4324	0.44	+0.4
5,176,771	-		Psyr_4324	0.44	-0.3
5,176,771	-		Psyr_4324	0.44	+0.4
5,176,771	-		Psyr_4324	0.44	-0.5
5,176,771	-		Psyr_4324	0.44	+0.3
5,176,856	+		Psyr_4324	0.56	+1.7
5,176,857	-		Psyr_4324	0.56	+1.4
5,176,857	-		Psyr_4324	0.56	+1.1
5,176,881	+		Psyr_4324	0.59	-1.1
5,176,882	-		Psyr_4324	0.59	-0.0
5,176,882	-		Psyr_4324	0.59	-2.4
5,176,882	-		Psyr_4324	0.59	+0.5
5,176,927	+		Psyr_4324	0.66	+1.0
5,176,927	+		Psyr_4324	0.66	+0.3
5,176,927	+		Psyr_4324	0.66	-2.5
5,176,927	+		Psyr_4324	0.66	+0.7
5,176,927	+		Psyr_4324	0.66	+0.1
5,176,927	+		Psyr_4324	0.66	-2.3
5,176,927	+		Psyr_4324	0.66	+0.9
5,176,927	+				-0.6
5,176,927	+		Psyr_4324	0.66	-2.9
5,176,927	+		Psyr_4324	0.66	-0.4
5,176,927	+		Psyr_4324	0.66	+1.7
5,176,928	-		Psyr_4324	0.66	+0.7
5,176,928	-		Psyr_4324	0.66	+1.0
5,176,928	-		Psyr_4324	0.66	-0.9
5,176,928	-		Psyr_4324	0.66	-0.8
5,176,928	-		Psyr_4324	0.66	+0.7
5,176,928	-		Psyr_4324	0.66	+0.8
5,176,928	-		Psyr_4324	0.66	-1.5
5,176,928	-		Psyr_4324	0.66	-1.7
5,176,989	+		Psyr_4324	0.74	-3.8
5,176,989	+		Psyr_4324	0.74	-2.1
5,176,989	+		Psyr_4324	0.74	+2.5
5,176,989	+		Psyr_4324	0.74	-0.9
5,176,990	-		Psyr_4324	0.75	+2.3
5,176,990	-		Psyr_4324	0.75	-1.9
5,176,990	-		Psyr_4324	0.75	-2.6
5,176,990	-		Psyr_4324	0.75	+0.0
5,176,990	-		Psyr_4324	0.75	-0.9
5,176,990	-		Psyr_4324	0.75	+2.3
5,177,017	+		Psyr_4324	0.78	-1.6
5,177,018	-		Psyr_4324	0.79	-1.1
5,177,018	-		Psyr_4324	0.79	+0.4
5,177,018	-		Psyr_4324	0.79	+0.7
5,177,018	-		Psyr_4324	0.79	+0.0
5,177,018	-		Psyr_4324	0.79	-2.3
5,177,018	-		Psyr_4324	0.79	+0.6
5,177,018	-		Psyr_4324	0.79	-3.3
5,177,059	-		Psyr_4324	0.84	-3.0
5,177,160	+				-0.3
5,177,160	+				+2.4
5,177,160	+				+2.6
5,177,160	+				+1.6
5,177,160	+				+1.0
5,177,160	+				-3.2
5,177,160	+				+2.3
5,177,160	+				+0.7
5,177,160	+				+2.7
5,177,160	+				-2.5
5,177,161	-				+0.4
5,177,161	-				-2.1
5,177,161	-				-2.1
5,177,161	-				-0.0
5,177,161	-				-2.4
5,177,161	-				-1.2
5,177,161	-				-0.3
5,177,161	-				-1.6
5,177,161	-				+1.5
5,177,161	-				+0.5
5,177,168	+				-1.8
5,177,169	-				+0.4
5,177,169	-				+1.7
5,177,169	-				-1.1
5,177,178	+				+0.6
5,177,178	+				+1.6
5,177,179	-				+3.7
5,177,255	+				-0.7
5,177,300	+				+4.7
5,177,301	-				-2.3
5,177,301	-				+0.4
5,177,301	-				-1.5
5,177,301	-				+1.4
5,177,346	+				+2.8
5,177,346	+				-2.4
5,177,347	-				+0.7
5,177,347	-				+0.7
5,177,347	-				+0.6
5,177,347	-				+2.2
5,177,366	-				-0.3
5,177,366	-				-1.3
5,177,418	+				-0.3
5,177,418	+				-0.5
5,177,418	+				+1.4
5,177,418	+				+0.0
5,177,418	+				-0.7
5,177,418	+				+0.4
5,177,418	+				+0.1
5,177,418	+				-0.0
5,177,418	+				+2.1
5,177,418	+				-1.5
5,177,418	+				-2.0
5,177,418	+				-0.9
5,177,418	+				+2.6
5,177,419	-				+2.9
5,177,419	-				-1.1
5,177,419	-				+1.8
5,177,419	-				-2.2
5,177,419	-				-2.3
5,177,419	-				-1.6
5,177,419	-				+1.7
5,177,461	+				-2.9
5,177,461	+				-1.2
5,177,462	-				+0.2
5,177,462	-				+0.3
5,177,483	-		Psyr_4325	0.10	-0.8
5,177,483	-		Psyr_4325	0.10	-0.1
5,177,483	-		Psyr_4325	0.10	-2.1
5,177,534	-		Psyr_4325	0.14	-0.6
5,177,579	+		Psyr_4325	0.17	-3.0
5,177,579	+		Psyr_4325	0.17	-2.0
5,177,579	+		Psyr_4325	0.17	-0.9
5,177,579	+		Psyr_4325	0.17	+3.1
5,177,580	-		Psyr_4325	0.17	+0.6
5,177,580	-		Psyr_4325	0.17	-0.3
5,177,615	+		Psyr_4325	0.20	-1.9
5,177,633	-		Psyr_4325	0.21	-1.2
5,177,633	-		Psyr_4325	0.21	-0.3
5,177,633	-		Psyr_4325	0.21	+0.2
5,177,772	+		Psyr_4325	0.32	+0.5
5,177,772	+		Psyr_4325	0.32	-1.4
5,177,773	-		Psyr_4325	0.32	-2.3
5,177,903	+		Psyr_4325	0.41	+0.4
5,177,903	+		Psyr_4325	0.41	-2.2
5,177,903	+		Psyr_4325	0.41	+4.1
5,177,903	+		Psyr_4325	0.41	+3.5
5,177,903	+		Psyr_4325	0.41	+0.0
5,177,903	+		Psyr_4325	0.41	-2.6
5,177,903	+		Psyr_4325	0.41	-0.6
5,177,903	+		Psyr_4325	0.41	-1.3
5,177,903	+		Psyr_4325	0.41	-0.7
5,177,903	+		Psyr_4325	0.41	+1.2
5,177,903	+		Psyr_4325	0.41	+0.9
5,177,903	+		Psyr_4325	0.41	-1.1
5,177,903	+		Psyr_4325	0.41	+1.3
5,177,904	-		Psyr_4325	0.42	-1.6
5,177,904	-		Psyr_4325	0.42	-1.5
5,177,904	-		Psyr_4325	0.42	+1.1
5,177,904	-		Psyr_4325	0.42	-0.9
5,177,904	-		Psyr_4325	0.42	+0.3
5,177,904	-		Psyr_4325	0.42	-2.8
5,177,904	-		Psyr_4325	0.42	+4.3
5,177,904	-		Psyr_4325	0.42	+0.4
5,177,904	-		Psyr_4325	0.42	+0.1
5,177,904	-		Psyr_4325	0.42	-1.4
5,177,904	-		Psyr_4325	0.42	+2.7
5,177,904	-		Psyr_4325	0.42	-1.7
5,177,904	-		Psyr_4325	0.42	+2.1
5,177,904	-		Psyr_4325	0.42	+3.8
5,177,975	+		Psyr_4325	0.47	+2.1
5,177,975	+		Psyr_4325	0.47	-1.7
5,177,976	-		Psyr_4325	0.47	-0.9
5,178,019	+		Psyr_4325	0.50	-1.3
5,178,019	+		Psyr_4325	0.50	-1.4
5,178,019	+		Psyr_4325	0.50	+2.5
5,178,019	+		Psyr_4325	0.50	-0.5
5,178,019	+		Psyr_4325	0.50	-1.6
5,178,020	-		Psyr_4325	0.50	-0.9
5,178,020	-		Psyr_4325	0.50	+3.0
5,178,057	+		Psyr_4325	0.53	+2.0
5,178,058	-		Psyr_4325	0.53	-3.4
5,178,058	-		Psyr_4325	0.53	-1.7
5,178,128	+		Psyr_4325	0.58	+0.0
5,178,129	-		Psyr_4325	0.58	+1.7
5,178,129	-		Psyr_4325	0.58	+0.9
5,178,129	-		Psyr_4325	0.58	-2.0
5,178,163	+		Psyr_4325	0.61	+1.8
5,178,163	+		Psyr_4325	0.61	-0.7
5,178,163	+		Psyr_4325	0.61	+0.1
5,178,163	+		Psyr_4325	0.61	-1.4
5,178,164	-		Psyr_4325	0.61	-0.3
5,178,164	-		Psyr_4325	0.61	-1.0
5,178,229	+		Psyr_4325	0.66	-2.1
5,178,229	+		Psyr_4325	0.66	-0.9
5,178,229	+		Psyr_4325	0.66	-0.7
5,178,230	-		Psyr_4325	0.66	-0.2
5,178,230	-		Psyr_4325	0.66	-1.3
5,178,230	-		Psyr_4325	0.66	-0.2
5,178,230	-		Psyr_4325	0.66	-0.3
5,178,230	-		Psyr_4325	0.66	+2.3
5,178,230	-		Psyr_4325	0.66	+3.4
5,178,230	-		Psyr_4325	0.66	-0.9
5,178,230	-		Psyr_4325	0.66	+0.1
5,178,277	+		Psyr_4325	0.69	-0.7
5,178,277	+		Psyr_4325	0.69	+1.7
5,178,277	+		Psyr_4325	0.69	+0.1
5,178,278	-		Psyr_4325	0.69	-1.3
5,178,278	-		Psyr_4325	0.69	+2.1
5,178,278	-		Psyr_4325	0.69	-2.0
5,178,278	-		Psyr_4325	0.69	-0.1
5,178,278	-		Psyr_4325	0.69	+3.4
5,178,279	+		Psyr_4325	0.70	-3.7
5,178,279	+		Psyr_4325	0.70	-1.1
5,178,280	-		Psyr_4325	0.70	+4.1
5,178,280	-		Psyr_4325	0.70	-0.3
5,178,390	+		Psyr_4325	0.78	+0.4
5,178,390	+		Psyr_4325	0.78	-2.1
5,178,390	+		Psyr_4325	0.78	-2.4
5,178,394	+		Psyr_4325	0.78	+2.7
5,178,394	+		Psyr_4325	0.78	-2.0
5,178,394	+		Psyr_4325	0.78	-1.3
5,178,394	+		Psyr_4325	0.78	+1.9
5,178,394	+		Psyr_4325	0.78	-2.4
5,178,394	+		Psyr_4325	0.78	-1.2
5,178,395	-		Psyr_4325	0.78	-2.1
5,178,395	-		Psyr_4325	0.78	-1.7
5,178,395	-		Psyr_4325	0.78	-1.9
5,178,395	-		Psyr_4325	0.78	-1.6
5,178,488	+		Psyr_4325	0.85	-2.9
5,178,488	+		Psyr_4325	0.85	+2.1
5,178,488	+		Psyr_4325	0.85	-0.6
5,178,488	+		Psyr_4325	0.85	+3.3
5,178,489	-		Psyr_4325	0.85	+0.6
5,178,489	-		Psyr_4325	0.85	+1.7
5,178,489	-		Psyr_4325	0.85	-1.4
5,178,489	-		Psyr_4325	0.85	+0.3
5,178,489	-		Psyr_4325	0.85	-1.6
5,178,489	-		Psyr_4325	0.85	-0.4
5,178,489	-		Psyr_4325	0.85	+1.7
5,178,520	+		Psyr_4325	0.87	-2.2
5,178,555	-				-1.7
5,178,555	-				+0.6
5,178,620	-				+3.5
5,178,639	-				+3.0
5,178,665	+				-0.3
5,178,666	-				+1.5
5,178,666	-				+1.3
5,178,706	+				+1.0
5,178,706	+				+4.4
5,178,706	+				+1.9
5,178,707	-				-1.7
5,178,707	-				-2.1
5,178,707	-				+1.6
5,178,707	-				-1.7
5,178,747	-				+2.2
5,178,826	+				+0.1
5,178,931	+		Psyr_4326	0.15	-1.7
5,178,931	+		Psyr_4326	0.15	+2.2
5,178,931	+		Psyr_4326	0.15	+0.4
5,178,932	-		Psyr_4326	0.15	-1.5
5,178,932	-		Psyr_4326	0.15	+1.2
5,178,932	-		Psyr_4326	0.15	-0.0
5,178,932	-		Psyr_4326	0.15	-0.3
5,178,952	+		Psyr_4326	0.17	-1.2
5,178,952	+		Psyr_4326	0.17	-3.6
5,178,952	+		Psyr_4326	0.17	-1.5
5,178,952	+		Psyr_4326	0.17	+2.3
5,178,953	-		Psyr_4326	0.17	-1.5
5,179,009	+		Psyr_4326	0.23	-3.3
5,179,009	+		Psyr_4326	0.23	-0.3
5,179,010	-		Psyr_4326	0.23	+2.4
5,179,010	-		Psyr_4326	0.23	-2.8
5,179,010	-		Psyr_4326	0.23	+1.2
5,179,010	-		Psyr_4326	0.23	-1.3
5,179,010	-		Psyr_4326	0.23	+1.3
5,179,010	-		Psyr_4326	0.23	-0.0
5,179,206	-		Psyr_4326	0.42	+1.4
5,179,206	-		Psyr_4326	0.42	+0.2
5,179,206	-		Psyr_4326	0.42	-1.1
5,179,343	-		Psyr_4326	0.56	-1.7
5,179,439	+		Psyr_4326	0.65	+0.3