Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3864

Experiment: apoplastic, sonication recovery; Green bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic, sonication recovery; Green bean
4,602,338	-		Psyr_3863	0.24	-2.8
4,602,346	+		Psyr_3863	0.25	-2.3
4,602,346	+		Psyr_3863	0.25	-1.0
4,602,347	-		Psyr_3863	0.26	+0.4
4,602,347	-		Psyr_3863	0.26	-2.4
4,602,347	-		Psyr_3863	0.26	-1.2
4,602,381	+		Psyr_3863	0.33	-0.6
4,602,381	+		Psyr_3863	0.33	+1.2
4,602,381	+		Psyr_3863	0.33	-0.9
4,602,382	-		Psyr_3863	0.33	+1.4
4,602,464	+		Psyr_3863	0.50	+0.7
4,602,465	-		Psyr_3863	0.50	-1.4
4,602,465	-		Psyr_3863	0.50	+0.3
4,602,555	+		Psyr_3863	0.69	+1.5
4,602,596	-		Psyr_3863	0.78	+1.2
4,602,596	-		Psyr_3863	0.78	-0.7
4,602,600	+		Psyr_3863	0.79	-0.5
4,602,601	-		Psyr_3863	0.79	-1.1
4,602,634	-		Psyr_3863	0.86	+1.6
4,602,688	+				+0.8
4,602,689	-				-2.2
4,602,689	-				-2.8
4,602,689	-				-1.7
4,602,689	-				-0.2
4,602,689	-				-1.5
4,602,689	-				-1.6
4,602,689	-				-1.0
4,602,689	-				-1.9
4,602,856	-				-0.3
4,603,155	+				+1.2
4,603,155	+				+2.4
4,603,155	+				-2.2
4,603,155	+				-0.2
4,603,155	+				-2.2
4,603,155	+				+1.2
4,603,155	+				-0.8
4,603,155	+				+1.1
4,603,155	+				+2.3
4,603,155	+				+0.1
4,603,155	+				+3.0
4,603,155	+				-1.1
4,603,155	+				-1.2
4,603,155	+				-0.7
4,603,155	+				+2.8
4,603,228	-				+0.2
4,603,315	+				-1.1
4,603,364	-				+2.4
4,603,364	-				+1.8
4,603,381	+				-1.4
4,603,381	+				-0.7
4,603,381	+				+0.9
4,603,381	+				-2.2
4,603,513	+				+0.3
4,603,513	+				-1.4
4,603,513	+				+1.1
4,603,513	+				+1.1
4,603,514	-				-3.1
4,603,514	-				+3.8
4,603,528	+				-1.2
4,603,528	+				+1.2
4,603,528	+				+0.5
4,603,528	+				-0.1
4,603,529	-				+0.6
4,603,561	-		Psyr_3864	0.10	-1.6
4,603,576	+		Psyr_3864	0.11	-1.1
4,603,577	-		Psyr_3864	0.11	+1.6
4,603,585	+		Psyr_3864	0.11	-1.6
4,603,586	-		Psyr_3864	0.11	+2.2
4,603,586	-		Psyr_3864	0.11	+0.7
4,603,765	+		Psyr_3864	0.19	-0.7
4,603,765	+		Psyr_3864	0.19	+2.7
4,603,765	+		Psyr_3864	0.19	-1.0
4,603,765	+		Psyr_3864	0.19	+1.6
4,603,766	-		Psyr_3864	0.19	+0.8
4,603,766	-		Psyr_3864	0.19	+1.0
4,603,766	-		Psyr_3864	0.19	+0.6
4,603,766	-		Psyr_3864	0.19	-0.6
4,603,766	-		Psyr_3864	0.19	+0.3
4,603,766	-		Psyr_3864	0.19	-2.9
4,603,766	-		Psyr_3864	0.19	+1.1
4,603,766	-		Psyr_3864	0.19	+0.4
4,603,787	-		Psyr_3864	0.19	-1.5
4,603,947	+		Psyr_3864	0.26	+0.4
4,603,947	+		Psyr_3864	0.26	-0.7
4,603,947	+		Psyr_3864	0.26	+2.6
4,603,947	+		Psyr_3864	0.26	+0.6
4,603,947	+		Psyr_3864	0.26	+0.4
4,603,947	+		Psyr_3864	0.26	+1.6
4,603,947	+		Psyr_3864	0.26	-1.0
4,603,947	+		Psyr_3864	0.26	+0.6
4,603,947	+		Psyr_3864	0.26	+4.0
4,603,947	+		Psyr_3864	0.26	+1.9
4,603,947	+		Psyr_3864	0.26	-1.4
4,603,947	+		Psyr_3864	0.26	+3.1
4,603,947	+		Psyr_3864	0.26	-1.0
4,603,947	+		Psyr_3864	0.26	+0.3
4,603,947	+		Psyr_3864	0.26	-1.7
4,603,947	+		Psyr_3864	0.26	+0.1
4,603,947	+		Psyr_3864	0.26	+1.2
4,603,947	+		Psyr_3864	0.26	-3.1
4,603,947	+		Psyr_3864	0.26	+0.6
4,603,947	+		Psyr_3864	0.26	+1.1
4,603,948	-		Psyr_3864	0.26	-0.7
4,603,948	-		Psyr_3864	0.26	-0.9
4,603,948	-		Psyr_3864	0.26	+2.6
4,603,948	-		Psyr_3864	0.26	+0.4
4,603,948	-		Psyr_3864	0.26	-0.7
4,603,948	-		Psyr_3864	0.26	+1.5
4,603,948	-		Psyr_3864	0.26	-2.7
4,603,948	-		Psyr_3864	0.26	+3.2
4,603,948	-		Psyr_3864	0.26	-1.4
4,603,948	-		Psyr_3864	0.26	-0.2
4,603,948	-		Psyr_3864	0.26	-1.9
4,603,948	-		Psyr_3864	0.26	-1.7
4,603,948	-		Psyr_3864	0.26	+1.2
4,603,948	-		Psyr_3864	0.26	-0.4
4,603,948	-		Psyr_3864	0.26	-1.2
4,603,948	-		Psyr_3864	0.26	-2.0
4,603,948	-		Psyr_3864	0.26	+0.2
4,603,948	-		Psyr_3864	0.26	+1.2
4,603,948	-		Psyr_3864	0.26	-3.1
4,603,948	-		Psyr_3864	0.26	+0.6
4,603,948	-		Psyr_3864	0.26	+0.9
4,603,948	-		Psyr_3864	0.26	-1.2
4,603,948	-		Psyr_3864	0.26	-0.8
4,603,948	-		Psyr_3864	0.26	-1.6
4,603,948	-		Psyr_3864	0.26	+1.0
4,603,948	-		Psyr_3864	0.26	+1.2
4,603,948	-		Psyr_3864	0.26	+0.7
4,603,948	-		Psyr_3864	0.26	-0.9
4,603,948	-		Psyr_3864	0.26	+0.8
4,603,948	-		Psyr_3864	0.26	+1.7
4,603,948	-		Psyr_3864	0.26	+2.2
4,603,948	-		Psyr_3864	0.26	+1.6
4,603,949	+		Psyr_3864	0.26	-1.4
4,603,949	+				-0.4
4,603,949	+		Psyr_3864	0.26	-0.1
4,603,949	+		Psyr_3864	0.26	+0.3
4,603,949	+		Psyr_3864	0.26	+0.9
4,603,949	+		Psyr_3864	0.26	+1.3
4,603,949	+		Psyr_3864	0.26	-2.6
4,603,950	-		Psyr_3864	0.26	+0.3
4,603,950	-		Psyr_3864	0.26	-1.7
4,603,950	-		Psyr_3864	0.26	-1.0
4,603,950	-		Psyr_3864	0.26	-0.6
4,603,951	+		Psyr_3864	0.26	-1.5
4,603,951	+		Psyr_3864	0.26	+1.6
4,603,951	+		Psyr_3864	0.26	+2.0
4,603,951	+		Psyr_3864	0.26	+0.2
4,603,951	+		Psyr_3864	0.26	+0.8
4,603,951	+		Psyr_3864	0.26	+2.5
4,603,951	+		Psyr_3864	0.26	+1.0
4,603,951	+		Psyr_3864	0.26	-0.6
4,603,951	+		Psyr_3864	0.26	+0.1
4,603,951	+		Psyr_3864	0.26	+2.2
4,603,951	+		Psyr_3864	0.26	+2.4
4,603,951	+		Psyr_3864	0.26	+1.4
4,603,952	-		Psyr_3864	0.26	-0.4
4,603,952	-		Psyr_3864	0.26	+3.2
4,603,952	-		Psyr_3864	0.26	-0.7
4,603,952	-		Psyr_3864	0.26	+2.0
4,603,952	-		Psyr_3864	0.26	-2.8
4,603,952	-		Psyr_3864	0.26	-0.6
4,603,952	-		Psyr_3864	0.26	+1.1
4,603,952	-		Psyr_3864	0.26	-1.5
4,603,952	-		Psyr_3864	0.26	+0.2
4,603,952	-		Psyr_3864	0.26	+2.9
4,603,952	-		Psyr_3864	0.26	-1.7
4,603,986	-		Psyr_3864	0.28	-1.9
4,603,986	-		Psyr_3864	0.28	-0.3
4,603,988	-		Psyr_3864	0.28	+2.1
4,603,988	-		Psyr_3864	0.28	-0.3
4,604,026	+		Psyr_3864	0.29	+1.6
4,604,026	+		Psyr_3864	0.29	-0.7
4,604,027	-		Psyr_3864	0.29	+1.2
4,604,083	+		Psyr_3864	0.32	-0.1
4,604,084	-		Psyr_3864	0.32	-0.0
4,604,084	-		Psyr_3864	0.32	-1.0
4,604,141	+		Psyr_3864	0.34	+2.1
4,604,141	+		Psyr_3864	0.34	+0.2
4,604,141	+		Psyr_3864	0.34	+2.1
4,604,141	+		Psyr_3864	0.34	+1.8
4,604,141	+		Psyr_3864	0.34	+1.4
4,604,142	-		Psyr_3864	0.34	-0.7
4,604,142	-		Psyr_3864	0.34	-0.4
4,604,142	-		Psyr_3864	0.34	-1.4
4,604,142	-		Psyr_3864	0.34	+0.3
4,604,142	-		Psyr_3864	0.34	+1.0
4,604,142	-		Psyr_3864	0.34	+0.2
4,604,216	-		Psyr_3864	0.37	-1.5
4,604,216	-		Psyr_3864	0.37	+2.4
4,604,216	-		Psyr_3864	0.37	+1.0
4,604,275	+		Psyr_3864	0.39	+1.4
4,604,275	+		Psyr_3864	0.39	+0.9
4,604,276	-		Psyr_3864	0.39	+1.5
4,604,320	+		Psyr_3864	0.41	-0.7
4,604,321	-		Psyr_3864	0.41	+3.0
4,604,339	+		Psyr_3864	0.42	+2.6
4,604,340	-		Psyr_3864	0.42	+1.2
4,604,449	+		Psyr_3864	0.47	+2.2
4,604,449	+		Psyr_3864	0.47	-0.9
4,604,449	+		Psyr_3864	0.47	-1.0
4,604,449	+		Psyr_3864	0.47	+2.9
4,604,449	+		Psyr_3864	0.47	+0.8
4,604,450	-		Psyr_3864	0.47	+0.6
4,604,497	+		Psyr_3864	0.49	-0.1
4,604,497	+		Psyr_3864	0.49	-0.0
4,604,497	+		Psyr_3864	0.49	-1.2
4,604,497	+		Psyr_3864	0.49	+1.1
4,604,497	+		Psyr_3864	0.49	+3.2
4,604,498	-		Psyr_3864	0.49	+1.8
4,604,498	-		Psyr_3864	0.49	+0.1
4,604,498	-		Psyr_3864	0.49	-0.2
4,604,515	+		Psyr_3864	0.49	+0.4
4,604,515	+		Psyr_3864	0.49	-2.1
4,604,516	-		Psyr_3864	0.49	-0.1
4,604,516	-		Psyr_3864	0.49	-1.2
4,604,516	-		Psyr_3864	0.49	-0.1
4,604,516	-		Psyr_3864	0.49	+1.4
4,604,626	+		Psyr_3864	0.54	-1.4
4,604,627	-		Psyr_3864	0.54	-1.7
4,604,683	+		Psyr_3864	0.56	+0.2
4,604,684	-		Psyr_3864	0.56	-1.2
4,604,684	-		Psyr_3864	0.56	-0.2
4,604,903	-		Psyr_3864	0.65	+0.3
4,604,903	-		Psyr_3864	0.65	-2.4
4,604,903	-		Psyr_3864	0.65	-1.9
4,604,903	-		Psyr_3864	0.65	-0.2
4,604,903	-		Psyr_3864	0.65	-0.1
4,604,903	-		Psyr_3864	0.65	-2.2
4,604,905	+		Psyr_3864	0.65	-1.4
4,604,905	+		Psyr_3864	0.65	+1.5
4,604,905	+		Psyr_3864	0.65	-2.7
4,604,905	+		Psyr_3864	0.65	+0.9
4,604,905	+		Psyr_3864	0.65	+1.2
4,604,906	-		Psyr_3864	0.65	-1.9
4,604,906	-		Psyr_3864	0.65	-0.0
4,604,906	-		Psyr_3864	0.65	-0.3
4,604,906	-		Psyr_3864	0.65	-0.0
4,604,906	-		Psyr_3864	0.65	+1.8
4,604,906	-		Psyr_3864	0.65	-0.1
4,604,944	+		Psyr_3864	0.67	+0.8
4,604,945	-		Psyr_3864	0.67	+3.8
4,604,953	+		Psyr_3864	0.67	-1.2
4,604,953	+		Psyr_3864	0.67	-1.7
4,604,954	-		Psyr_3864	0.67	-0.1
4,604,954	-		Psyr_3864	0.67	-3.8
4,604,954	-		Psyr_3864	0.67	+1.4
4,604,974	+		Psyr_3864	0.68	-0.3
4,604,974	+		Psyr_3864	0.68	-1.0
4,604,975	-		Psyr_3864	0.68	-0.0
4,604,975	-		Psyr_3864	0.68	-1.0
4,604,975	-		Psyr_3864	0.68	+1.6
4,605,007	+		Psyr_3864	0.69	-0.4
4,605,061	+		Psyr_3864	0.72	-1.2
4,605,061	+		Psyr_3864	0.72	+2.3
4,605,061	+		Psyr_3864	0.72	+1.1
4,605,061	+		Psyr_3864	0.72	-0.9
4,605,061	+		Psyr_3864	0.72	-0.7
4,605,061	+		Psyr_3864	0.72	+2.4
4,605,061	+		Psyr_3864	0.72	+3.3
4,605,061	+		Psyr_3864	0.72	-1.4
4,605,061	+		Psyr_3864	0.72	+1.7
4,605,062	-		Psyr_3864	0.72	+2.2
4,605,062	-		Psyr_3864	0.72	-2.3
4,605,062	-		Psyr_3864	0.72	-1.2
4,605,062	-		Psyr_3864	0.72	-0.9
4,605,062	-		Psyr_3864	0.72	+1.8
4,605,062	-		Psyr_3864	0.72	-2.2
4,605,062	-		Psyr_3864	0.72	-2.7
4,605,062	-		Psyr_3864	0.72	-2.0
4,605,062	-		Psyr_3864	0.72	-2.0
4,605,062	-		Psyr_3864	0.72	+0.5
4,605,062	-		Psyr_3864	0.72	+0.6
4,605,062	-		Psyr_3864	0.72	+6.0
4,605,181	+		Psyr_3864	0.77	-1.4
4,605,181	+		Psyr_3864	0.77	-1.3
4,605,182	-		Psyr_3864	0.77	-0.8
4,605,182	-		Psyr_3864	0.77	-0.6
4,605,262	-		Psyr_3864	0.80	+1.4
4,605,262	-		Psyr_3864	0.80	+1.4
4,605,275	-		Psyr_3864	0.81	+1.2
4,605,275	-		Psyr_3864	0.81	-0.2
4,605,433	+		Psyr_3864	0.87	+0.9
4,605,433	+		Psyr_3864	0.87	-1.6
4,605,433	+		Psyr_3864	0.87	+0.8
4,605,434	-		Psyr_3864	0.87	+3.5
4,605,434	-		Psyr_3864	0.87	-1.6
4,605,631	+				+0.5
4,605,631	+				-1.7
4,605,769	+				-1.5
4,605,770	-				+2.1
4,605,770	-				-1.6
4,605,770	-				-0.9
4,605,770	-				-2.7
4,605,770	-				-0.7
4,605,808	+				+0.6
4,605,809	-				+0.7
4,606,072	+		Psyr_3865	0.38	-0.2
4,606,072	+		Psyr_3865	0.38	+0.3
4,606,072	+		Psyr_3865	0.38	-1.4
4,606,072	+		Psyr_3865	0.38	+0.7
4,606,072	+		Psyr_3865	0.38	+1.3
4,606,072	+		Psyr_3865	0.38	-1.3
4,606,072	+		Psyr_3865	0.38	-1.1
4,606,072	+		Psyr_3865	0.38	+0.5
4,606,073	-		Psyr_3865	0.38	+0.8
4,606,073	-		Psyr_3865	0.38	-0.7
4,606,073	-		Psyr_3865	0.38	+4.9
4,606,073	-		Psyr_3865	0.38	-1.2
4,606,073	-		Psyr_3865	0.38	+2.1
4,606,073	-		Psyr_3865	0.38	-0.5
4,606,073	-		Psyr_3865	0.38	+1.4
4,606,073	-		Psyr_3865	0.38	+0.1
4,606,111	-		Psyr_3865	0.45	-1.7
4,606,350	+		Psyr_3865	0.89	-1.7
4,606,428	+				-1.7
4,606,429	-				+2.1
4,606,429	-				-1.2
4,606,429	-				-0.9
4,606,429	-				+2.0
4,606,440	+				+0.6
4,606,441	-				-1.0
4,606,454	-				-0.2
4,606,501	+				-0.9
4,606,550	+				+1.2
4,606,551	-				+0.1
4,606,551	-				-1.6
4,606,561	+				-2.1
4,606,561	+				-0.7
4,606,562	-				+0.6
4,606,562	-				-0.4
4,606,562	-				+2.1
4,606,695	+		Psyr_3866	0.34	-1.6
4,606,695	+		Psyr_3866	0.34	-0.9
4,606,695	+		Psyr_3866	0.34	-3.4
4,606,695	+		Psyr_3866	0.34	-1.7
4,606,696	-		Psyr_3866	0.34	-3.1
4,606,696	-		Psyr_3866	0.34	-0.3
4,606,749	+		Psyr_3866	0.45	-1.6
4,606,749	+		Psyr_3866	0.45	-1.7