Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3076

Experiment: apoplastic, sonication recovery; Green bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic, sonication recovery; Green bean
3,677,299	-		Psyr_3075	0.48	-0.4
3,677,316	+		Psyr_3075	0.49	+0.3
3,677,317	-		Psyr_3075	0.49	-0.7
3,677,317	-		Psyr_3075	0.49	-0.7
3,677,317	-		Psyr_3075	0.49	-0.0
3,677,317	-		Psyr_3075	0.49	+1.4
3,677,317	-				-0.1
3,677,317	-		Psyr_3075	0.49	+2.5
3,677,445	-		Psyr_3075	0.58	-0.5
3,677,459	-		Psyr_3075	0.59	-0.4
3,677,466	+		Psyr_3075	0.59	-0.3
3,677,507	+		Psyr_3075	0.62	+0.6
3,677,507	+		Psyr_3075	0.62	+0.6
3,677,507	+		Psyr_3075	0.62	-0.5
3,677,507	+		Psyr_3075	0.62	+1.0
3,677,507	+		Psyr_3075	0.62	+0.1
3,677,507	+		Psyr_3075	0.62	+3.1
3,677,507	+		Psyr_3075	0.62	-0.6
3,677,508	-		Psyr_3075	0.62	+1.6
3,677,508	-		Psyr_3075	0.62	-1.1
3,677,508	-		Psyr_3075	0.62	+0.7
3,677,508	-		Psyr_3075	0.62	+0.5
3,677,531	+		Psyr_3075	0.64	+0.0
3,678,017	+				-1.5
3,678,079	+				-0.1
3,678,079	+				-0.4
3,678,126	+				+0.7
3,678,126	+				+1.4
3,678,127	-				+0.5
3,678,147	+				-0.1
3,678,148	-				+0.5
3,678,259	+		Psyr_3076	0.10	-0.2
3,678,259	+		Psyr_3076	0.10	-0.3
3,678,260	-		Psyr_3076	0.10	-2.0
3,678,260	-		Psyr_3076	0.10	-1.2
3,678,260	-		Psyr_3076	0.10	-1.7
3,678,260	-		Psyr_3076	0.10	-1.5
3,678,260	-		Psyr_3076	0.10	+2.0
3,678,332	+		Psyr_3076	0.14	+2.8
3,678,389	-		Psyr_3076	0.16	+0.5
3,678,515	+		Psyr_3076	0.22	-0.0
3,678,516	-		Psyr_3076	0.22	+0.5
3,678,516	-		Psyr_3076	0.22	-1.1
3,678,516	-		Psyr_3076	0.22	-0.9
3,678,616	+		Psyr_3076	0.27	-1.0
3,678,616	+		Psyr_3076	0.27	+0.0
3,678,616	+		Psyr_3076	0.27	+0.1
3,678,616	+		Psyr_3076	0.27	-1.6
3,678,616	+		Psyr_3076	0.27	-2.0
3,678,617	-		Psyr_3076	0.27	-0.1
3,678,617	-		Psyr_3076	0.27	-0.4
3,678,617	-		Psyr_3076	0.27	-0.5
3,678,617	-		Psyr_3076	0.27	-1.5
3,678,699	-		Psyr_3076	0.31	+2.9
3,679,087	+		Psyr_3076	0.49	+0.3
3,679,088	-		Psyr_3076	0.49	-2.5
3,679,088	-		Psyr_3076	0.49	-1.4
3,679,264	+		Psyr_3076	0.57	-0.1
3,679,309	+		Psyr_3076	0.59	-0.2
3,679,310	-		Psyr_3076	0.59	+0.2
3,679,310	-		Psyr_3076	0.59	-1.5
3,679,312	+		Psyr_3076	0.59	-0.5
3,679,312	+		Psyr_3076	0.59	-0.5
3,679,312	+		Psyr_3076	0.59	+0.0
3,679,313	-		Psyr_3076	0.59	+0.1
3,679,313	-		Psyr_3076	0.59	-1.5
3,679,450	+		Psyr_3076	0.65	-2.0
3,679,500	+		Psyr_3076	0.68	+2.7
3,679,534	+		Psyr_3076	0.69	+2.3
3,679,534	+		Psyr_3076	0.69	-1.1
3,679,535	-		Psyr_3076	0.69	-0.7
3,679,535	-		Psyr_3076	0.69	-2.7
3,679,535	-		Psyr_3076	0.69	+0.4
3,679,535	-		Psyr_3076	0.69	+2.2
3,679,535	-		Psyr_3076	0.69	-1.1
3,679,535	-		Psyr_3076	0.69	+0.5
3,679,535	-		Psyr_3076	0.69	-2.6
3,679,629	+		Psyr_3076	0.74	-0.9
3,679,629	+		Psyr_3076	0.74	-2.0
3,679,629	+		Psyr_3076	0.74	+1.2
3,679,629	+		Psyr_3076	0.74	+0.4
3,679,629	+		Psyr_3076	0.74	+1.5
3,679,629	+		Psyr_3076	0.74	-1.0
3,679,629	+		Psyr_3076	0.74	-1.8
3,679,630	-		Psyr_3076	0.74	-0.5
3,679,630	-		Psyr_3076	0.74	+1.2
3,679,630	-		Psyr_3076	0.74	+0.3
3,679,630	-		Psyr_3076	0.74	+3.1
3,679,630	-		Psyr_3076	0.74	+1.3
3,679,630	-		Psyr_3076	0.74	-1.7
3,679,630	-		Psyr_3076	0.74	+0.3
3,679,630	-		Psyr_3076	0.74	-1.7
3,679,630	-		Psyr_3076	0.74	+0.6
3,679,644	+		Psyr_3076	0.74	-1.7
3,679,645	-		Psyr_3076	0.74	-0.7
3,679,810	-		Psyr_3076	0.82	-1.2
3,679,810	-		Psyr_3076	0.82	-0.2
3,679,810	-		Psyr_3076	0.82	-0.3
3,679,847	+		Psyr_3076	0.84	-1.0
3,679,848	-		Psyr_3076	0.84	+0.6
3,679,962	-		Psyr_3076	0.89	+0.5
3,680,028	+				+0.6
3,680,051	-				+2.9
3,680,051	-				+0.7
3,680,051	-				+1.9
3,680,249	-				+2.1
3,680,252	+				-2.4
3,680,252	+				+2.1
3,680,252	+				+1.3
3,680,253	-				+2.6
3,680,253	-				-1.0
3,680,253	-				-1.2
3,680,253	-				+1.1
3,680,258	+				+0.0
3,680,259	-				-0.5
3,680,271	+				+2.2
3,680,321	-				+0.7
3,680,325	-				+0.5
3,680,378	+				-1.5
3,680,379	-				-1.2
3,680,393	+				-0.2
3,680,393	+				-1.8
3,680,394	-				-1.2
3,680,394	-				-0.5
3,680,468	+				-0.9
3,680,468	+				-1.4
3,680,468	+				-0.5
3,680,468	+				-0.2
3,680,468	+				-0.3
3,680,468	+				-1.4
3,680,469	-				+1.2
3,680,469	-				-2.5
3,680,469	-				-0.6
3,680,469	-				-1.0
3,680,469	-				-2.2
3,680,487	+				+1.0
3,680,489	+		Psyr_3077	0.10	+3.0
3,680,489	+		Psyr_3077	0.10	+0.5
3,680,490	-		Psyr_3077	0.10	+1.2
3,680,507	+		Psyr_3077	0.11	+1.7
3,680,508	-		Psyr_3077	0.11	-2.5
3,680,530	+		Psyr_3077	0.13	+0.3
3,680,530	+		Psyr_3077	0.13	-1.5
3,680,530	+		Psyr_3077	0.13	-1.7
3,680,531	-		Psyr_3077	0.13	+1.0
3,680,531	-		Psyr_3077	0.13	+3.6
3,680,531	-		Psyr_3077	0.13	-2.4
3,680,542	-		Psyr_3077	0.14	-0.5
3,680,632	+		Psyr_3077	0.20	+0.5
3,680,667	+		Psyr_3077	0.22	+1.6
3,680,717	+		Psyr_3077	0.25	+3.3
3,680,718	-		Psyr_3077	0.26	+2.5
3,680,830	-		Psyr_3077	0.33	-0.8
3,680,850	+		Psyr_3077	0.34	+0.2
3,680,850	+		Psyr_3077	0.34	+0.5
3,680,850	+		Psyr_3077	0.34	+2.8
3,680,926	-		Psyr_3077	0.40	-0.5
3,680,934	+		Psyr_3077	0.40	+2.6
3,680,934	+		Psyr_3077	0.40	-0.0
3,681,061	+		Psyr_3077	0.49	+1.6
3,681,061	+		Psyr_3077	0.49	-2.2
3,681,061	+		Psyr_3077	0.49	-0.5
3,681,062	-		Psyr_3077	0.49	-1.5
3,681,062	-		Psyr_3077	0.49	-0.9
3,681,080	+		Psyr_3077	0.50	+2.0
3,681,080	+		Psyr_3077	0.50	-1.0
3,681,081	-		Psyr_3077	0.50	-1.9
3,681,081	-		Psyr_3077	0.50	+1.1
3,681,114	-		Psyr_3077	0.52	-3.2
3,681,124	+		Psyr_3077	0.53	-0.5
3,681,124	+		Psyr_3077	0.53	-1.4
3,681,124	+				-0.1
3,681,125	-		Psyr_3077	0.53	+3.2
3,681,125	-		Psyr_3077	0.53	-0.3
3,681,125	-		Psyr_3077	0.53	-1.9
3,681,185	+		Psyr_3077	0.57	-2.2
3,681,185	+		Psyr_3077	0.57	-0.7
3,681,185	+		Psyr_3077	0.57	-2.7
3,681,185	+		Psyr_3077	0.57	-0.1
3,681,185	+		Psyr_3077	0.57	+2.0
3,681,185	+		Psyr_3077	0.57	-1.4
3,681,186	-		Psyr_3077	0.57	+3.9
3,681,186	-		Psyr_3077	0.57	+1.2
3,681,186	-		Psyr_3077	0.57	+0.0
3,681,186	-		Psyr_3077	0.57	+0.2
3,681,186	-		Psyr_3077	0.57	-1.4