Experiment: apoplastic, sonication recovery; Green bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_1662 and Psyr_1663 are separated by 61 nucleotides Psyr_1663 and Psyr_1664 are separated by 252 nucleotides Psyr_1664 and Psyr_1665 overlap by 4 nucleotides
Psyr_1662: Psyr_1662 - tRNA pseudouridine synthase, at 1,867,089 to 1,867,943
_1662
Psyr_1663: Psyr_1663 - phosphoribosylanthranilate isomerase, at 1,868,005 to 1,868,625
_1663
Psyr_1664: Psyr_1664 - acetyl-CoA carboxylase carboxyltransferase subunit alpha, at 1,868,878 to 1,869,798
_1664
Psyr_1665: Psyr_1665 - Folylpolyglutamate synthetase, at 1,869,795 to 1,871,099
_1665
Position (kb) 1868
1869
1870 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1867.896 kb on + strand at 1867.897 kb on - strand at 1868.046 kb on - strand at 1868.129 kb on + strand, within Psyr_1663 at 1868.303 kb on - strand, within Psyr_1663 at 1868.392 kb on + strand, within Psyr_1663 at 1868.392 kb on + strand, within Psyr_1663 at 1868.392 kb on + strand, within Psyr_1663 at 1868.392 kb on + strand, within Psyr_1663 at 1868.392 kb on + strand, within Psyr_1663 at 1868.392 kb on + strand, within Psyr_1663 at 1868.392 kb on + strand, within Psyr_1663 at 1868.392 kb on + strand, within Psyr_1663 at 1868.393 kb on - strand, within Psyr_1663 at 1868.393 kb on - strand, within Psyr_1663 at 1868.695 kb on + strand at 1868.695 kb on + strand at 1868.797 kb on + strand at 1868.797 kb on + strand at 1868.799 kb on + strand at 1869.803 kb on + strand at 1869.803 kb on + strand at 1869.828 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic, sonication recovery; Green bean remove 1,867,896 + +0.4 1,867,897 - -0.6 1,868,046 - -1.6 1,868,129 + Psyr_1663 0.20 -1.5 1,868,303 - Psyr_1663 0.48 -2.4 1,868,392 + Psyr_1663 0.62 -3.0 1,868,392 + Psyr_1663 0.62 -2.7 1,868,392 + Psyr_1663 0.62 -3.3 1,868,392 + Psyr_1663 0.62 -1.6 1,868,392 + Psyr_1663 0.62 -2.4 1,868,392 + Psyr_1663 0.62 -1.6 1,868,392 + Psyr_1663 0.62 -2.1 1,868,392 + Psyr_1663 0.62 -1.0 1,868,393 - Psyr_1663 0.62 +1.7 1,868,393 - Psyr_1663 0.62 +0.6 1,868,695 + -1.1 1,868,695 + -0.8 1,868,797 + +0.0 1,868,797 + +0.6 1,868,799 + +0.4 1,869,803 + -0.5 1,869,803 + +2.1 1,869,828 + +1.5
Or see this region's nucleotide sequence