Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1290

Experiment: apoplastic, sonication recovery; Green bean

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_1289 and Psyr_1290 are separated by 49 nucleotidesPsyr_1290 and Psyr_1291 are separated by 104 nucleotides Psyr_1289: Psyr_1289 - Glutaredoxin, at 1,453,992 to 1,454,732 _1289 Psyr_1290: Psyr_1290 - homoserine dehydrogenase, at 1,454,782 to 1,456,173 _1290 Psyr_1291: Psyr_1291 - L-threonine synthase, at 1,456,278 to 1,457,687 _1291 Position (kb) 1454 1455 1456 1457Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1453.903 kb on + strandat 1453.903 kb on + strandat 1453.903 kb on + strandat 1453.903 kb on + strandat 1453.903 kb on + strandat 1453.903 kb on + strandat 1453.903 kb on + strandat 1453.904 kb on - strandat 1453.904 kb on - strandat 1453.904 kb on - strandat 1453.904 kb on - strandat 1453.930 kb on + strandat 1453.981 kb on + strandat 1453.982 kb on - strandat 1454.730 kb on + strandat 1454.730 kb on + strandat 1456.167 kb on + strandat 1456.167 kb on + strandat 1456.167 kb on + strandat 1456.167 kb on + strandat 1456.171 kb on + strandat 1456.194 kb on + strandat 1456.194 kb on + strandat 1456.201 kb on + strandat 1456.201 kb on + strandat 1456.201 kb on + strandat 1456.201 kb on + strandat 1456.201 kb on + strandat 1456.201 kb on + strandat 1456.201 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction apoplastic, sonication recovery; Green bean
remove
1,453,903 + +0.9
1,453,903 + -0.0
1,453,903 + -1.6
1,453,903 + -2.6
1,453,903 + +2.5
1,453,903 + +4.2
1,453,903 + +0.3
1,453,904 - +1.5
1,453,904 - -1.8
1,453,904 - -0.6
1,453,904 - +0.9
1,453,930 + -0.3
1,453,981 + +0.3
1,453,982 - +1.5
1,454,730 + -0.5
1,454,730 + -2.2
1,456,167 + -2.4
1,456,167 + -1.4
1,456,167 + +2.9
1,456,167 + +0.4
1,456,171 + -0.5
1,456,194 + -2.7
1,456,194 + -0.5
1,456,201 + -0.9
1,456,201 + +2.1
1,456,201 + +1.6
1,456,201 + -0.1
1,456,201 + +3.1
1,456,201 + -0.3
1,456,201 + -1.0

Or see this region's nucleotide sequence