Experiment: apoplastic, sonication recovery; Green bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0837 and Psyr_0838 are separated by 30 nucleotides Psyr_0838 and Psyr_0839 are separated by 157 nucleotides Psyr_0839 and Psyr_0840 are separated by 366 nucleotides Psyr_0840 and Psyr_0841 are separated by 100 nucleotides
Psyr_0837: Psyr_0837 - Sugar fermentation stimulation protein, at 949,369 to 950,082
_0837
Psyr_0838: Psyr_0838 - Rieske [2Fe-2S] region, at 950,113 to 950,511
_0838
Psyr_0839: Psyr_0839 - Deoxyribose-phosphate aldolase, at 950,669 to 951,454
_0839
Psyr_0840: Psyr_0840 - Pentapeptide repeat protein, at 951,821 to 952,165
_0840
Psyr_0841: Psyr_0841 - conserved hypothetical protein, at 952,266 to 953,936
_0841
Position (kb) 950
951
952 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 949.762 kb on + strand, within Psyr_0837 at 949.762 kb on + strand, within Psyr_0837 at 949.763 kb on - strand, within Psyr_0837 at 949.763 kb on - strand, within Psyr_0837 at 949.903 kb on + strand, within Psyr_0837 at 949.903 kb on + strand, within Psyr_0837 at 949.903 kb on + strand, within Psyr_0837 at 949.904 kb on - strand, within Psyr_0837 at 949.904 kb on - strand, within Psyr_0837 at 949.904 kb on - strand, within Psyr_0837 at 949.904 kb on - strand, within Psyr_0837 at 949.904 kb on - strand, within Psyr_0837 at 949.904 kb on - strand, within Psyr_0837 at 950.094 kb on - strand at 950.333 kb on + strand, within Psyr_0838 at 950.453 kb on + strand, within Psyr_0838 at 950.453 kb on + strand, within Psyr_0838 at 950.454 kb on - strand, within Psyr_0838 at 950.536 kb on + strand at 950.536 kb on + strand at 950.596 kb on + strand at 950.596 kb on + strand at 950.597 kb on - strand at 950.597 kb on - strand at 950.597 kb on - strand at 950.600 kb on + strand at 950.601 kb on - strand at 950.601 kb on - strand at 950.632 kb on + strand at 950.632 kb on + strand at 950.632 kb on + strand at 950.632 kb on + strand at 950.632 kb on + strand at 950.632 kb on + strand at 950.632 kb on + strand at 950.633 kb on - strand at 950.633 kb on - strand at 950.633 kb on - strand at 950.633 kb on - strand at 950.633 kb on - strand at 950.633 kb on - strand at 950.633 kb on - strand at 950.633 kb on - strand at 950.633 kb on - strand at 950.633 kb on - strand at 950.633 kb on - strand at 950.633 kb on - strand at 950.633 kb on - strand at 950.633 kb on - strand at 950.633 kb on - strand at 950.633 kb on - strand at 950.668 kb on + strand at 950.668 kb on + strand at 950.668 kb on + strand at 950.668 kb on + strand at 950.669 kb on - strand at 950.669 kb on - strand at 950.881 kb on + strand, within Psyr_0839 at 950.882 kb on - strand, within Psyr_0839 at 950.882 kb on - strand, within Psyr_0839 at 950.882 kb on - strand, within Psyr_0839 at 950.949 kb on + strand, within Psyr_0839 at 950.949 kb on + strand, within Psyr_0839 at 950.949 kb on + strand, within Psyr_0839 at 950.949 kb on + strand, within Psyr_0839 at 950.950 kb on - strand, within Psyr_0839 at 950.950 kb on - strand, within Psyr_0839 at 950.950 kb on - strand, within Psyr_0839 at 950.950 kb on - strand, within Psyr_0839 at 950.950 kb on - strand, within Psyr_0839 at 950.950 kb on - strand, within Psyr_0839 at 951.085 kb on + strand, within Psyr_0839 at 951.085 kb on + strand, within Psyr_0839 at 951.253 kb on - strand, within Psyr_0839 at 951.253 kb on - strand, within Psyr_0839 at 951.293 kb on - strand, within Psyr_0839 at 951.314 kb on + strand, within Psyr_0839 at 951.314 kb on + strand, within Psyr_0839 at 951.314 kb on + strand, within Psyr_0839 at 951.314 kb on + strand, within Psyr_0839 at 951.315 kb on - strand, within Psyr_0839 at 951.315 kb on - strand, within Psyr_0839 at 951.315 kb on - strand, within Psyr_0839 at 951.315 kb on - strand, within Psyr_0839 at 951.535 kb on + strand at 951.677 kb on + strand at 951.678 kb on - strand at 951.688 kb on + strand at 951.702 kb on + strand at 951.702 kb on + strand at 951.703 kb on - strand at 951.710 kb on - strand at 951.767 kb on + strand at 951.767 kb on + strand at 951.767 kb on + strand at 951.767 kb on + strand at 951.767 kb on + strand at 951.767 kb on + strand at 951.767 kb on + strand at 951.767 kb on + strand at 951.767 kb on + strand at 951.767 kb on + strand at 951.767 kb on + strand at 951.767 kb on + strand at 951.768 kb on - strand at 951.768 kb on - strand at 951.768 kb on - strand at 951.768 kb on - strand at 951.768 kb on - strand at 951.768 kb on - strand at 951.768 kb on - strand at 951.768 kb on - strand at 951.991 kb on - strand, within Psyr_0840 at 952.129 kb on + strand, within Psyr_0840 at 952.129 kb on + strand, within Psyr_0840 at 952.129 kb on + strand, within Psyr_0840 at 952.130 kb on - strand, within Psyr_0840 at 952.130 kb on - strand, within Psyr_0840 at 952.130 kb on - strand, within Psyr_0840 at 952.130 kb on - strand, within Psyr_0840 at 952.130 kb on - strand, within Psyr_0840 at 952.130 kb on - strand, within Psyr_0840 at 952.130 kb on - strand, within Psyr_0840 at 952.130 kb on - strand, within Psyr_0840 at 952.130 kb on - strand, within Psyr_0840 at 952.131 kb on + strand at 952.131 kb on + strand at 952.131 kb on + strand at 952.131 kb on + strand at 952.131 kb on + strand at 952.131 kb on + strand at 952.131 kb on + strand at 952.131 kb on + strand at 952.131 kb on + strand at 952.131 kb on + strand at 952.131 kb on + strand at 952.131 kb on + strand at 952.131 kb on + strand at 952.132 kb on - strand at 952.132 kb on - strand at 952.132 kb on - strand at 952.132 kb on - strand at 952.132 kb on - strand at 952.132 kb on - strand at 952.132 kb on - strand at 952.132 kb on - strand at 952.132 kb on - strand at 952.208 kb on + strand at 952.209 kb on - strand at 952.209 kb on - strand at 952.209 kb on - strand at 952.267 kb on + strand at 952.267 kb on + strand at 952.268 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic, sonication recovery; Green bean remove 949,762 + Psyr_0837 0.55 -2.4 949,762 + Psyr_0837 0.55 -1.2 949,763 - Psyr_0837 0.55 +1.2 949,763 - Psyr_0837 0.55 +0.9 949,903 + Psyr_0837 0.75 -2.1 949,903 + Psyr_0837 0.75 +1.8 949,903 + Psyr_0837 0.75 -1.6 949,904 - Psyr_0837 0.75 +0.6 949,904 - Psyr_0837 0.75 +1.1 949,904 - Psyr_0837 0.75 -2.6 949,904 - Psyr_0837 0.75 +0.5 949,904 - Psyr_0837 0.75 -0.9 949,904 - Psyr_0837 0.75 -1.6 950,094 - -0.8 950,333 + Psyr_0838 0.55 -0.6 950,453 + Psyr_0838 0.85 -0.6 950,453 + Psyr_0838 0.85 +3.4 950,454 - Psyr_0838 0.85 -3.2 950,536 + -1.0 950,536 + -0.5 950,596 + -0.3 950,596 + +2.2 950,597 - -2.2 950,597 - +2.9 950,597 - +2.5 950,600 + -2.6 950,601 - +0.7 950,601 - +2.6 950,632 + +1.2 950,632 + -0.7 950,632 + +1.0 950,632 + +1.1 950,632 + +0.9 950,632 + -1.2 950,632 + +1.1 950,633 - -1.7 950,633 - -0.5 950,633 - -1.1 950,633 - +0.8 950,633 - -1.0 950,633 - +0.0 950,633 - -1.8 950,633 - -0.3 950,633 - -2.8 950,633 - -0.5 950,633 - +0.1 950,633 - -3.4 950,633 - -0.6 950,633 - +3.0 950,633 - -1.1 950,633 - -1.3 950,668 + -0.3 950,668 + -3.1 950,668 + -0.6 950,668 + +0.4 950,669 - +0.1 950,669 - -1.1 950,881 + Psyr_0839 0.27 +1.4 950,882 - Psyr_0839 0.27 +0.7 950,882 - Psyr_0839 0.27 -0.6 950,882 - Psyr_0839 0.27 -2.2 950,949 + Psyr_0839 0.36 -2.0 950,949 + Psyr_0839 0.36 -3.1 950,949 + Psyr_0839 0.36 -2.7 950,949 + Psyr_0839 0.36 +0.2 950,950 - Psyr_0839 0.36 -2.7 950,950 - Psyr_0839 0.36 +0.9 950,950 - Psyr_0839 0.36 -1.7 950,950 - Psyr_0839 0.36 +3.0 950,950 - Psyr_0839 0.36 +0.7 950,950 - Psyr_0839 0.36 -0.2 951,085 + Psyr_0839 0.53 +1.9 951,085 + Psyr_0839 0.53 +1.4 951,253 - Psyr_0839 0.74 +0.5 951,253 - Psyr_0839 0.74 +0.5 951,293 - Psyr_0839 0.79 +2.5 951,314 + Psyr_0839 0.82 +1.9 951,314 + Psyr_0839 0.82 +2.7 951,314 + Psyr_0839 0.82 +0.4 951,314 + Psyr_0839 0.82 -0.3 951,315 - Psyr_0839 0.82 -0.7 951,315 - Psyr_0839 0.82 +0.7 951,315 - Psyr_0839 0.82 +2.5 951,315 - Psyr_0839 0.82 +1.3 951,535 + +1.7 951,677 + -0.8 951,678 - +2.0 951,688 + -0.6 951,702 + -0.6 951,702 + +0.4 951,703 - +2.7 951,710 - +2.7 951,767 + -1.2 951,767 + +1.3 951,767 + -2.5 951,767 + +2.0 951,767 + +3.7 951,767 + -0.8 951,767 + +0.3 951,767 + +1.8 951,767 + +1.3 951,767 + -0.1 951,767 + -2.0 951,767 + -0.6 951,768 - -0.9 951,768 - -1.6 951,768 - -0.3 951,768 - -2.3 951,768 - +0.7 951,768 - +0.7 951,768 - +1.5 951,768 - +0.7 951,991 - Psyr_0840 0.49 +0.2 952,129 + Psyr_0840 0.89 -1.7 952,129 + Psyr_0840 0.89 +0.9 952,129 + Psyr_0840 0.89 +1.7 952,130 - Psyr_0840 0.90 -1.6 952,130 - Psyr_0840 0.90 +1.2 952,130 - Psyr_0840 0.90 -2.2 952,130 - Psyr_0840 0.90 +1.1 952,130 - Psyr_0840 0.90 +0.6 952,130 - Psyr_0840 0.90 +0.8 952,130 - Psyr_0840 0.90 -2.1 952,130 - Psyr_0840 0.90 -1.0 952,130 - Psyr_0840 0.90 +0.0 952,131 + -2.7 952,131 + -2.0 952,131 + -0.8 952,131 + -3.1 952,131 + +0.7 952,131 + -1.8 952,131 + +2.7 952,131 + +1.6 952,131 + +0.5 952,131 + +1.4 952,131 + -2.2 952,131 + -0.4 952,131 + -0.7 952,132 - +2.5 952,132 - +0.2 952,132 - -2.0 952,132 - -2.4 952,132 - -1.6 952,132 - +2.0 952,132 - -1.1 952,132 - -0.7 952,132 - +0.3 952,208 + -0.3 952,209 - +1.2 952,209 - +0.2 952,209 - +2.3 952,267 + +0.6 952,267 + -0.3 952,268 - -2.0
Or see this region's nucleotide sequence