Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0648

Experiment: apoplastic, sonication recovery; Green bean

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0647 and Psyr_0648 are separated by 7 nucleotidesPsyr_0648 and Psyr_0649 are separated by 85 nucleotides Psyr_0647: Psyr_0647 - Protein of unknown function DUF726, at 734,578 to 735,975 _0647 Psyr_0648: Psyr_0648 - transporter, putative, at 735,983 to 737,011 _0648 Psyr_0649: Psyr_0649 - transcriptional regulator, AraC family, at 737,097 to 737,900 _0649 Position (kb) 735 736 737 738Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 735.050 kb on + strand, within Psyr_0647at 735.050 kb on + strand, within Psyr_0647at 735.050 kb on + strand, within Psyr_0647at 735.050 kb on + strand, within Psyr_0647at 735.050 kb on + strand, within Psyr_0647at 735.050 kb on + strand, within Psyr_0647at 735.051 kb on - strand, within Psyr_0647at 735.136 kb on + strand, within Psyr_0647at 735.137 kb on - strand, within Psyr_0647at 735.193 kb on - strand, within Psyr_0647at 735.475 kb on + strand, within Psyr_0647at 735.475 kb on + strand, within Psyr_0647at 735.475 kb on + strand, within Psyr_0647at 735.475 kb on + strand, within Psyr_0647at 735.476 kb on - strand, within Psyr_0647at 735.476 kb on - strand, within Psyr_0647at 735.476 kb on - strand, within Psyr_0647at 735.476 kb on - strand, within Psyr_0647at 735.552 kb on + strand, within Psyr_0647at 735.553 kb on - strand, within Psyr_0647at 735.583 kb on + strand, within Psyr_0647at 735.729 kb on + strand, within Psyr_0647at 735.729 kb on + strand, within Psyr_0647at 735.729 kb on + strand, within Psyr_0647at 735.733 kb on + strand, within Psyr_0647at 735.733 kb on + strand, within Psyr_0647at 735.733 kb on + strand, within Psyr_0647at 735.733 kb on + strand, within Psyr_0647at 735.733 kb on + strand, within Psyr_0647at 735.733 kb on + strand, within Psyr_0647at 735.733 kb on + strand, within Psyr_0647at 735.733 kb on + strand, within Psyr_0647at 735.733 kb on + strand, within Psyr_0647at 735.733 kb on + strand, within Psyr_0647at 735.733 kb on + strand, within Psyr_0647at 735.733 kb on + strand, within Psyr_0647at 735.733 kb on + strand, within Psyr_0647at 735.734 kb on - strand, within Psyr_0647at 735.734 kb on - strand, within Psyr_0647at 735.734 kb on - strand, within Psyr_0647at 735.734 kb on - strand, within Psyr_0647at 735.734 kb on - strand, within Psyr_0647at 735.734 kb on - strand, within Psyr_0647at 735.734 kb on - strand, within Psyr_0647at 735.734 kb on - strand, within Psyr_0647at 735.734 kb on - strand, within Psyr_0647at 735.734 kb on - strand, within Psyr_0647at 735.734 kb on - strand, within Psyr_0647at 735.937 kb on + strandat 735.938 kb on - strandat 735.973 kb on + strandat 735.973 kb on + strandat 735.973 kb on + strandat 735.973 kb on + strandat 735.973 kb on + strandat 735.974 kb on - strandat 735.974 kb on - strandat 735.974 kb on - strandat 735.974 kb on - strandat 736.044 kb on + strandat 736.044 kb on + strandat 736.044 kb on + strandat 736.044 kb on + strandat 736.044 kb on + strandat 736.089 kb on + strand, within Psyr_0648at 736.089 kb on + strand, within Psyr_0648at 736.089 kb on + strand, within Psyr_0648at 736.089 kb on + strand, within Psyr_0648at 736.090 kb on - strand, within Psyr_0648at 736.090 kb on - strand, within Psyr_0648at 736.362 kb on + strand, within Psyr_0648at 736.362 kb on + strand, within Psyr_0648at 736.363 kb on - strand, within Psyr_0648at 736.363 kb on - strand, within Psyr_0648at 736.404 kb on + strand, within Psyr_0648at 736.404 kb on + strand, within Psyr_0648at 736.405 kb on - strand, within Psyr_0648at 736.405 kb on - strand, within Psyr_0648at 736.405 kb on - strand, within Psyr_0648at 736.405 kb on - strand, within Psyr_0648at 736.405 kb on - strand, within Psyr_0648at 736.448 kb on + strand, within Psyr_0648at 736.448 kb on + strand, within Psyr_0648at 736.449 kb on - strand, within Psyr_0648at 736.859 kb on + strand, within Psyr_0648at 736.859 kb on + strand, within Psyr_0648at 736.860 kb on - strand, within Psyr_0648at 736.860 kb on - strand, within Psyr_0648at 736.860 kb on - strand, within Psyr_0648at 736.884 kb on + strand, within Psyr_0648at 736.884 kb on + strand, within Psyr_0648at 736.885 kb on - strand, within Psyr_0648at 736.885 kb on - strand, within Psyr_0648at 736.885 kb on - strand, within Psyr_0648at 736.885 kb on - strand, within Psyr_0648at 736.932 kb on + strandat 736.932 kb on + strandat 736.932 kb on + strandat 736.933 kb on - strandat 737.033 kb on + strandat 737.033 kb on + strandat 737.055 kb on - strandat 737.085 kb on + strandat 737.085 kb on + strandat 737.086 kb on - strandat 737.086 kb on - strandat 737.086 kb on - strandat 737.093 kb on + strandat 737.094 kb on - strandat 737.181 kb on + strand, within Psyr_0649at 737.181 kb on + strand, within Psyr_0649at 737.181 kb on + strand, within Psyr_0649at 737.181 kb on + strand, within Psyr_0649at 737.181 kb on + strand, within Psyr_0649at 737.182 kb on - strand, within Psyr_0649at 737.182 kb on - strand, within Psyr_0649at 737.182 kb on - strand, within Psyr_0649at 737.388 kb on + strand, within Psyr_0649at 737.388 kb on + strand, within Psyr_0649at 737.388 kb on + strand, within Psyr_0649at 737.388 kb on + strand, within Psyr_0649at 737.388 kb on + strand, within Psyr_0649at 737.388 kb on + strand, within Psyr_0649at 737.389 kb on - strand, within Psyr_0649at 737.389 kb on - strand, within Psyr_0649at 737.389 kb on - strand, within Psyr_0649at 737.389 kb on - strand, within Psyr_0649at 737.389 kb on - strand, within Psyr_0649at 737.389 kb on - strand, within Psyr_0649at 737.389 kb on - strand, within Psyr_0649at 737.389 kb on - strand, within Psyr_0649at 737.389 kb on - strand, within Psyr_0649at 737.898 kb on + strandat 737.898 kb on + strandat 737.899 kb on - strandat 737.899 kb on - strandat 737.899 kb on - strandat 737.899 kb on - strandat 737.899 kb on - strandat 737.899 kb on - strandat 737.934 kb on + strandat 737.934 kb on + strandat 737.934 kb on + strandat 737.934 kb on + strandat 737.934 kb on + strandat 737.935 kb on - strandat 737.935 kb on - strandat 737.955 kb on + strandat 737.955 kb on + strandat 737.955 kb on + strandat 737.955 kb on + strandat 737.956 kb on - strandat 737.956 kb on - strandat 737.956 kb on - strandat 737.956 kb on - strandat 737.974 kb on + strandat 737.975 kb on - strandat 738.009 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction apoplastic, sonication recovery; Green bean
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735,050 + Psyr_0647 0.34 +3.0
735,050 + Psyr_0647 0.34 +2.7
735,050 + Psyr_0647 0.34 +0.3
735,050 + Psyr_0647 0.34 -1.5
735,050 + Psyr_0647 0.34 +0.2
735,050 + Psyr_0647 0.34 +0.7
735,051 - Psyr_0647 0.34 -1.2
735,136 + Psyr_0647 0.40 +1.6
735,137 - Psyr_0647 0.40 -0.1
735,193 - Psyr_0647 0.44 +0.5
735,475 + Psyr_0647 0.64 -1.0
735,475 + Psyr_0647 0.64 -0.9
735,475 + Psyr_0647 0.64 -1.4
735,475 + Psyr_0647 0.64 +0.1
735,476 - Psyr_0647 0.64 +1.8
735,476 - Psyr_0647 0.64 -0.4
735,476 - Psyr_0647 0.64 +1.4
735,476 - Psyr_0647 0.64 -1.8
735,552 + Psyr_0647 0.70 -1.8
735,553 - Psyr_0647 0.70 +2.0
735,583 + Psyr_0647 0.72 +2.2
735,729 + Psyr_0647 0.82 -0.7
735,729 + Psyr_0647 0.82 -1.5
735,729 + Psyr_0647 0.82 -0.9
735,733 + Psyr_0647 0.83 -1.1
735,733 + Psyr_0647 0.83 -1.5
735,733 + Psyr_0647 0.83 +1.8
735,733 + Psyr_0647 0.83 -0.2
735,733 + Psyr_0647 0.83 +1.6
735,733 + Psyr_0647 0.83 -1.8
735,733 + Psyr_0647 0.83 -2.2
735,733 + Psyr_0647 0.83 -1.1
735,733 + Psyr_0647 0.83 -0.8
735,733 + Psyr_0647 0.83 -2.0
735,733 + Psyr_0647 0.83 -1.7
735,733 + Psyr_0647 0.83 +0.2
735,733 + Psyr_0647 0.83 -0.8
735,734 - Psyr_0647 0.83 +2.1
735,734 - Psyr_0647 0.83 +0.2
735,734 - Psyr_0647 0.83 +1.5
735,734 - Psyr_0647 0.83 -1.9
735,734 - Psyr_0647 0.83 +1.7
735,734 - Psyr_0647 0.83 +0.3
735,734 - Psyr_0647 0.83 +0.1
735,734 - Psyr_0647 0.83 +2.0
735,734 - Psyr_0647 0.83 -1.3
735,734 - Psyr_0647 0.83 -3.0
735,734 - Psyr_0647 0.83 +0.6
735,937 + -0.4
735,938 - -1.7
735,973 + +0.0
735,973 + -0.3
735,973 + +0.1
735,973 + -3.4
735,973 + +1.7
735,974 - -0.2
735,974 - +0.7
735,974 - -0.5
735,974 - -2.7
736,044 + +0.1
736,044 + +2.5
736,044 + +0.7
736,044 + -2.3
736,044 + -1.0
736,089 + Psyr_0648 0.10 +1.4
736,089 + Psyr_0648 0.10 +1.7
736,089 + Psyr_0648 0.10 -0.9
736,089 + Psyr_0648 0.10 +1.7
736,090 - Psyr_0648 0.10 -1.6
736,090 - Psyr_0648 0.10 +1.0
736,362 + Psyr_0648 0.37 -0.8
736,362 + Psyr_0648 0.37 +1.7
736,363 - Psyr_0648 0.37 +1.5
736,363 - Psyr_0648 0.37 +1.8
736,404 + Psyr_0648 0.41 +2.8
736,404 + Psyr_0648 0.41 +1.7
736,405 - Psyr_0648 0.41 -1.1
736,405 - Psyr_0648 0.41 +3.8
736,405 - Psyr_0648 0.41 -2.9
736,405 - Psyr_0648 0.41 +2.6
736,405 - Psyr_0648 0.41 -1.1
736,448 + Psyr_0648 0.45 -1.9
736,448 + Psyr_0648 0.45 -0.0
736,449 - Psyr_0648 0.45 +0.5
736,859 + Psyr_0648 0.85 -1.7
736,859 + Psyr_0648 0.85 +2.1
736,860 - Psyr_0648 0.85 -0.4
736,860 - Psyr_0648 0.85 +0.1
736,860 - Psyr_0648 0.85 +0.1
736,884 + Psyr_0648 0.88 +1.2
736,884 + Psyr_0648 0.88 -2.0
736,885 - Psyr_0648 0.88 -1.3
736,885 - Psyr_0648 0.88 +2.2
736,885 - Psyr_0648 0.88 -2.4
736,885 - Psyr_0648 0.88 +0.5
736,932 + +4.1
736,932 + -1.0
736,932 + +1.6
736,933 - +1.7
737,033 + -0.9
737,033 + -3.3
737,055 - -2.5
737,085 + -0.7
737,085 + +3.8
737,086 - +1.0
737,086 - -1.7
737,086 - -0.2
737,093 + +2.5
737,094 - -2.0
737,181 + Psyr_0649 0.10 -0.4
737,181 + Psyr_0649 0.10 +0.5
737,181 + Psyr_0649 0.10 -1.0
737,181 + Psyr_0649 0.10 +2.0
737,181 + Psyr_0649 0.10 -2.5
737,182 - Psyr_0649 0.11 +1.7
737,182 - Psyr_0649 0.11 -0.6
737,182 - Psyr_0649 0.11 -2.9
737,388 + Psyr_0649 0.36 -1.6
737,388 + Psyr_0649 0.36 -1.0
737,388 + Psyr_0649 0.36 +0.1
737,388 + Psyr_0649 0.36 -0.3
737,388 + Psyr_0649 0.36 -1.0
737,388 + Psyr_0649 0.36 +0.2
737,389 - Psyr_0649 0.36 -2.4
737,389 - Psyr_0649 0.36 +2.5
737,389 - Psyr_0649 0.36 -2.4
737,389 - Psyr_0649 0.36 +0.2
737,389 - Psyr_0649 0.36 -1.4
737,389 - Psyr_0649 0.36 -3.4
737,389 - Psyr_0649 0.36 -1.5
737,389 - Psyr_0649 0.36 +2.4
737,389 - Psyr_0649 0.36 +1.2
737,898 + +0.0
737,898 + +0.7
737,899 - +1.1
737,899 - +0.1
737,899 - +0.3
737,899 - +0.5
737,899 - -0.5
737,899 - -2.1
737,934 + -0.6
737,934 + +0.7
737,934 + -2.7
737,934 + -1.5
737,934 + -0.6
737,935 - +0.4
737,935 - -0.2
737,955 + +0.7
737,955 + +0.8
737,955 + -1.4
737,955 + -0.3
737,956 - +2.0
737,956 - -2.8
737,956 - +0.2
737,956 - -0.3
737,974 + -1.2
737,975 - +0.7
738,009 + -2.7

Or see this region's nucleotide sequence