Experiment: apoplastic, sonication recovery; Green bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0574 and Psyr_0575 overlap by 1 nucleotides Psyr_0575 and Psyr_0576 are separated by 270 nucleotides
Psyr_0574: Psyr_0574 - protease FtsH subunit HflK, at 652,290 to 653,492
_0574
Psyr_0575: Psyr_0575 - protease FtsH subunit HflC, at 653,492 to 654,361
_0575
Psyr_0576: Psyr_0576 - ATP phosphoribosyltransferase regulatory subunit, putative, at 654,632 to 655,819
_0576
Position (kb) 653
654
655 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 652.528 kb on + strand, within Psyr_0574 at 652.548 kb on + strand, within Psyr_0574 at 652.548 kb on + strand, within Psyr_0574 at 652.548 kb on + strand, within Psyr_0574 at 652.548 kb on + strand, within Psyr_0574 at 652.550 kb on + strand, within Psyr_0574 at 652.551 kb on - strand, within Psyr_0574 at 652.560 kb on + strand, within Psyr_0574 at 652.560 kb on + strand, within Psyr_0574 at 652.560 kb on + strand, within Psyr_0574 at 652.560 kb on + strand, within Psyr_0574 at 652.560 kb on + strand, within Psyr_0574 at 652.560 kb on + strand, within Psyr_0574 at 652.560 kb on + strand, within Psyr_0574 at 652.560 kb on + strand, within Psyr_0574 at 652.560 kb on + strand, within Psyr_0574 at 652.561 kb on - strand, within Psyr_0574 at 652.561 kb on - strand, within Psyr_0574 at 652.561 kb on - strand, within Psyr_0574 at 652.641 kb on + strand, within Psyr_0574 at 652.641 kb on + strand, within Psyr_0574 at 652.665 kb on + strand, within Psyr_0574 at 652.665 kb on + strand, within Psyr_0574 at 652.666 kb on - strand, within Psyr_0574 at 652.666 kb on - strand, within Psyr_0574 at 652.695 kb on + strand, within Psyr_0574 at 652.762 kb on - strand, within Psyr_0574 at 653.064 kb on - strand, within Psyr_0574 at 653.123 kb on + strand, within Psyr_0574 at 653.192 kb on + strand, within Psyr_0574 at 653.329 kb on - strand, within Psyr_0574 at 653.329 kb on - strand, within Psyr_0574 at 653.393 kb on + strand at 653.470 kb on + strand at 653.470 kb on + strand at 653.470 kb on + strand at 653.470 kb on + strand at 653.470 kb on + strand at 653.470 kb on + strand at 653.471 kb on - strand at 653.471 kb on - strand at 653.474 kb on + strand at 653.518 kb on + strand at 653.561 kb on + strand at 653.561 kb on + strand at 653.561 kb on + strand at 653.561 kb on + strand at 653.562 kb on - strand at 653.565 kb on + strand at 653.565 kb on + strand at 653.565 kb on + strand at 653.566 kb on - strand at 653.566 kb on - strand at 653.566 kb on - strand at 653.566 kb on - strand at 653.654 kb on + strand, within Psyr_0575 at 653.756 kb on + strand, within Psyr_0575 at 653.792 kb on + strand, within Psyr_0575 at 653.792 kb on + strand, within Psyr_0575 at 653.792 kb on + strand, within Psyr_0575 at 653.792 kb on + strand, within Psyr_0575 at 654.043 kb on + strand, within Psyr_0575 at 654.044 kb on - strand, within Psyr_0575 at 654.212 kb on + strand, within Psyr_0575 at 654.213 kb on - strand, within Psyr_0575 at 654.224 kb on + strand, within Psyr_0575 at 654.245 kb on + strand, within Psyr_0575 at 654.254 kb on + strand, within Psyr_0575 at 654.360 kb on - strand at 654.363 kb on + strand at 654.363 kb on + strand at 654.363 kb on + strand at 654.363 kb on + strand at 654.364 kb on - strand at 654.364 kb on - strand at 654.364 kb on - strand at 654.405 kb on + strand at 654.421 kb on + strand at 654.421 kb on + strand at 654.421 kb on + strand at 654.421 kb on + strand at 654.421 kb on + strand at 654.421 kb on + strand at 654.421 kb on + strand at 654.421 kb on + strand at 654.421 kb on + strand at 654.558 kb on + strand at 654.678 kb on + strand at 654.708 kb on + strand at 654.901 kb on + strand, within Psyr_0576 at 655.005 kb on + strand, within Psyr_0576
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic, sonication recovery; Green bean remove 652,528 + Psyr_0574 0.20 -0.6 652,548 + Psyr_0574 0.21 -0.2 652,548 + Psyr_0574 0.21 +0.2 652,548 + Psyr_0574 0.21 -0.6 652,548 + Psyr_0574 0.21 -2.2 652,550 + Psyr_0574 0.22 -0.6 652,551 - Psyr_0574 0.22 -1.6 652,560 + Psyr_0574 0.22 -0.8 652,560 + Psyr_0574 0.22 -1.8 652,560 + Psyr_0574 0.22 +0.2 652,560 + Psyr_0574 0.22 +0.2 652,560 + Psyr_0574 0.22 +0.2 652,560 + Psyr_0574 0.22 +1.8 652,560 + Psyr_0574 0.22 +0.2 652,560 + Psyr_0574 0.22 +3.6 652,560 + Psyr_0574 0.22 +0.4 652,561 - Psyr_0574 0.23 -1.8 652,561 - Psyr_0574 0.23 -0.1 652,561 - Psyr_0574 0.23 -1.1 652,641 + Psyr_0574 0.29 -1.7 652,641 + Psyr_0574 0.29 -1.6 652,665 + Psyr_0574 0.31 +0.2 652,665 + Psyr_0574 0.31 -1.6 652,666 - Psyr_0574 0.31 +2.8 652,666 - Psyr_0574 0.31 -0.2 652,695 + Psyr_0574 0.34 +0.2 652,762 - Psyr_0574 0.39 -0.8 653,064 - Psyr_0574 0.64 -1.2 653,123 + Psyr_0574 0.69 -1.6 653,192 + Psyr_0574 0.75 -1.7 653,329 - Psyr_0574 0.86 -0.2 653,329 - Psyr_0574 0.86 -1.2 653,393 + -1.4 653,470 + -0.3 653,470 + -0.8 653,470 + +0.6 653,470 + -0.7 653,470 + +0.9 653,470 + -0.4 653,471 - -2.2 653,471 - +0.9 653,474 + +0.0 653,518 + +2.7 653,561 + -0.3 653,561 + -1.7 653,561 + -0.6 653,561 + -1.4 653,562 - -1.7 653,565 + +1.7 653,565 + -0.6 653,565 + -0.4 653,566 - +1.3 653,566 - -0.8 653,566 - -0.3 653,566 - -0.3 653,654 + Psyr_0575 0.19 -0.4 653,756 + Psyr_0575 0.30 -2.2 653,792 + Psyr_0575 0.34 -0.3 653,792 + Psyr_0575 0.34 -1.6 653,792 + Psyr_0575 0.34 -1.7 653,792 + Psyr_0575 0.34 +0.7 654,043 + Psyr_0575 0.63 -1.3 654,044 - Psyr_0575 0.63 -1.3 654,212 + Psyr_0575 0.83 +0.2 654,213 - Psyr_0575 0.83 -0.8 654,224 + Psyr_0575 0.84 -0.3 654,245 + Psyr_0575 0.87 -0.8 654,254 + Psyr_0575 0.88 -0.8 654,360 - -0.4 654,363 + -1.1 654,363 + -1.2 654,363 + -0.6 654,363 + +1.7 654,364 - -0.0 654,364 - -0.8 654,364 - +1.3 654,405 + +3.0 654,421 + -0.4 654,421 + -1.3 654,421 + +4.0 654,421 + -0.6 654,421 + +3.0 654,421 + +1.5 654,421 + -1.4 654,421 + +0.2 654,421 + +2.7 654,558 + +3.7 654,678 + -1.6 654,708 + -3.9 654,901 + Psyr_0576 0.23 -2.3 655,005 + Psyr_0576 0.31 -2.5
Or see this region's nucleotide sequence