Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0442

Experiment: apoplastic, sonication recovery; Green bean

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0441 and Psyr_0442 are separated by 406 nucleotidesPsyr_0442 and Psyr_0443 overlap by 1 nucleotidesPsyr_0443 and Psyr_0444 are separated by 1 nucleotides Psyr_0441: Psyr_0441 - conserved hypothetical protein, at 478,811 to 479,206 _0441 Psyr_0442: Psyr_0442 - Malonate decarboxylase, alpha subunit, at 479,613 to 481,289 _0442 Psyr_0443: Psyr_0443 - Triphosphoribosyl-dephospho-CoA synthase, at 481,289 to 482,164 _0443 Psyr_0444: Psyr_0444 - Malonate decarboxylase delta subunit, at 482,166 to 482,465 _0444 Position (kb) 479 480 481 482Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6 7at 478.743 kb on + strandat 478.743 kb on + strandat 478.743 kb on + strandat 478.743 kb on + strandat 478.743 kb on + strandat 478.812 kb on + strandat 478.829 kb on + strandat 478.829 kb on + strandat 478.829 kb on + strandat 478.829 kb on + strandat 478.830 kb on - strandat 478.830 kb on - strandat 478.830 kb on - strandat 478.830 kb on - strandat 478.830 kb on - strandat 478.830 kb on - strandat 478.830 kb on - strandat 478.830 kb on - strandat 478.830 kb on - strandat 478.830 kb on - strandat 478.969 kb on + strand, within Psyr_0441at 478.970 kb on - strand, within Psyr_0441at 479.041 kb on - strand, within Psyr_0441at 479.041 kb on - strand, within Psyr_0441at 479.041 kb on - strand, within Psyr_0441at 479.156 kb on + strand, within Psyr_0441at 479.196 kb on - strandat 479.196 kb on - strandat 479.197 kb on + strandat 479.197 kb on + strandat 479.197 kb on + strandat 479.197 kb on + strandat 479.197 kb on + strandat 479.198 kb on - strandat 479.198 kb on - strandat 479.198 kb on - strandat 479.198 kb on - strandat 479.198 kb on - strandat 479.198 kb on - strandat 479.198 kb on - strandat 479.198 kb on - strandat 479.198 kb on - strandat 479.198 kb on - strandat 479.198 kb on - strandat 479.198 kb on - strandat 479.255 kb on - strandat 479.283 kb on + strandat 479.296 kb on + strandat 479.305 kb on - strandat 479.370 kb on - strandat 479.376 kb on - strandat 479.464 kb on - strandat 479.577 kb on + strandat 479.578 kb on - strandat 479.578 kb on - strandat 479.686 kb on + strandat 480.012 kb on + strand, within Psyr_0442at 480.012 kb on + strand, within Psyr_0442at 480.012 kb on + strand, within Psyr_0442at 480.012 kb on + strand, within Psyr_0442at 480.012 kb on + strand, within Psyr_0442at 480.012 kb on + strand, within Psyr_0442at 480.013 kb on - strand, within Psyr_0442at 480.013 kb on - strand, within Psyr_0442at 480.013 kb on - strand, within Psyr_0442at 480.013 kb on - strand, within Psyr_0442at 480.013 kb on - strand, within Psyr_0442at 480.024 kb on + strand, within Psyr_0442at 480.025 kb on - strand, within Psyr_0442at 480.102 kb on + strand, within Psyr_0442at 480.102 kb on + strand, within Psyr_0442at 480.102 kb on + strand, within Psyr_0442at 480.102 kb on + strand, within Psyr_0442at 480.103 kb on - strand, within Psyr_0442at 480.103 kb on - strand, within Psyr_0442at 480.103 kb on - strand, within Psyr_0442at 480.103 kb on - strand, within Psyr_0442at 480.103 kb on - strand, within Psyr_0442at 480.103 kb on - strand, within Psyr_0442at 480.273 kb on + strand, within Psyr_0442at 480.273 kb on + strand, within Psyr_0442at 480.273 kb on + strand, within Psyr_0442at 480.273 kb on + strand, within Psyr_0442at 480.273 kb on + strand, within Psyr_0442at 480.273 kb on + strand, within Psyr_0442at 480.273 kb on + strand, within Psyr_0442at 480.273 kb on + strand, within Psyr_0442at 480.273 kb on + strand, within Psyr_0442at 480.273 kb on + strand, within Psyr_0442at 480.274 kb on - strand, within Psyr_0442at 480.274 kb on - strand, within Psyr_0442at 480.274 kb on - strand, within Psyr_0442at 480.274 kb on - strand, within Psyr_0442at 480.357 kb on + strand, within Psyr_0442at 480.358 kb on - strand, within Psyr_0442at 480.358 kb on - strand, within Psyr_0442at 480.358 kb on - strand, within Psyr_0442at 480.358 kb on - strand, within Psyr_0442at 480.436 kb on - strand, within Psyr_0442at 480.436 kb on - strand, within Psyr_0442at 480.573 kb on + strand, within Psyr_0442at 480.574 kb on - strand, within Psyr_0442at 480.574 kb on - strand, within Psyr_0442at 480.574 kb on - strand, within Psyr_0442at 480.849 kb on + strand, within Psyr_0442at 480.987 kb on + strand, within Psyr_0442at 480.987 kb on + strand, within Psyr_0442at 480.988 kb on - strand, within Psyr_0442at 481.032 kb on + strand, within Psyr_0442at 481.038 kb on + strand, within Psyr_0442at 481.038 kb on + strand, within Psyr_0442at 481.039 kb on - strand, within Psyr_0442at 481.039 kb on - strand, within Psyr_0442at 481.258 kb on - strandat 481.258 kb on - strandat 481.258 kb on - strandat 481.258 kb on - strandat 481.258 kb on - strandat 481.600 kb on + strand, within Psyr_0443at 481.600 kb on + strand, within Psyr_0443at 481.601 kb on - strand, within Psyr_0443at 481.601 kb on - strand, within Psyr_0443at 481.601 kb on - strand, within Psyr_0443at 481.603 kb on + strand, within Psyr_0443at 481.604 kb on - strand, within Psyr_0443at 481.604 kb on - strand, within Psyr_0443at 481.853 kb on - strand, within Psyr_0443at 481.853 kb on - strand, within Psyr_0443at 481.916 kb on - strand, within Psyr_0443at 481.998 kb on - strand, within Psyr_0443

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Per-strain Table

Position Strand Gene LocusTag Fraction apoplastic, sonication recovery; Green bean
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478,743 + -0.6
478,743 + +0.7
478,743 + +4.3
478,743 + +3.4
478,743 + +4.2
478,812 + +0.6
478,829 + -1.4
478,829 + +6.8
478,829 + +0.0
478,829 + -0.6
478,830 - +2.6
478,830 - +3.0
478,830 - +1.1
478,830 - +0.4
478,830 - +0.5
478,830 - +0.8
478,830 - -1.8
478,830 - +2.1
478,830 - -0.0
478,830 - -2.0
478,969 + Psyr_0441 0.40 -0.4
478,970 - Psyr_0441 0.40 +3.2
479,041 - Psyr_0441 0.58 -2.1
479,041 - Psyr_0441 0.58 +0.5
479,041 - Psyr_0441 0.58 -1.7
479,156 + Psyr_0441 0.87 -2.1
479,196 - +1.1
479,196 - -1.8
479,197 + -1.1
479,197 + -2.0
479,197 + +0.1
479,197 + -2.3
479,197 + +2.9
479,198 - -0.4
479,198 - +0.2
479,198 - -1.1
479,198 - +2.1
479,198 - -1.7
479,198 - +1.2
479,198 - -1.0
479,198 - -0.7
479,198 - -2.2
479,198 - -1.4
479,198 - +3.1
479,198 - -1.6
479,255 - -0.2
479,283 + -2.5
479,296 + -0.4
479,305 - +0.2
479,370 - -0.1
479,376 - +0.9
479,464 - -2.0
479,577 + +1.8
479,578 - -0.4
479,578 - +0.2
479,686 + -2.0
480,012 + Psyr_0442 0.24 -1.2
480,012 + Psyr_0442 0.24 -0.4
480,012 + Psyr_0442 0.24 +2.6
480,012 + Psyr_0442 0.24 +0.7
480,012 + Psyr_0442 0.24 +0.9
480,012 + Psyr_0442 0.24 +0.3
480,013 - Psyr_0442 0.24 -1.3
480,013 - Psyr_0442 0.24 -2.6
480,013 - Psyr_0442 0.24 +1.7
480,013 - Psyr_0442 0.24 +0.5
480,013 - Psyr_0442 0.24 -0.2
480,024 + Psyr_0442 0.25 +1.4
480,025 - Psyr_0442 0.25 +0.3
480,102 + Psyr_0442 0.29 +1.5
480,102 + Psyr_0442 0.29 +2.6
480,102 + Psyr_0442 0.29 +1.4
480,102 + Psyr_0442 0.29 +1.6
480,103 - Psyr_0442 0.29 -1.1
480,103 - Psyr_0442 0.29 -1.7
480,103 - Psyr_0442 0.29 +0.3
480,103 - Psyr_0442 0.29 +1.6
480,103 - Psyr_0442 0.29 +1.3
480,103 - Psyr_0442 0.29 -0.3
480,273 + Psyr_0442 0.39 -2.2
480,273 + Psyr_0442 0.39 +2.1
480,273 + Psyr_0442 0.39 -1.7
480,273 + Psyr_0442 0.39 -1.6
480,273 + Psyr_0442 0.39 +1.5
480,273 + Psyr_0442 0.39 +1.4
480,273 + Psyr_0442 0.39 +1.7
480,273 + Psyr_0442 0.39 -0.3
480,273 + Psyr_0442 0.39 +0.4
480,273 + Psyr_0442 0.39 -1.2
480,274 - Psyr_0442 0.39 +0.0
480,274 - Psyr_0442 0.39 -0.4
480,274 - Psyr_0442 0.39 -0.4
480,274 - Psyr_0442 0.39 -0.3
480,357 + Psyr_0442 0.44 -2.0
480,358 - Psyr_0442 0.44 +1.7
480,358 - Psyr_0442 0.44 -2.6
480,358 - Psyr_0442 0.44 +3.8
480,358 - Psyr_0442 0.44 -1.5
480,436 - Psyr_0442 0.49 -1.5
480,436 - Psyr_0442 0.49 +0.6
480,573 + Psyr_0442 0.57 -2.2
480,574 - Psyr_0442 0.57 +0.3
480,574 - Psyr_0442 0.57 -0.4
480,574 - Psyr_0442 0.57 +2.5
480,849 + Psyr_0442 0.74 -0.9
480,987 + Psyr_0442 0.82 +1.2
480,987 + Psyr_0442 0.82 +0.3
480,988 - Psyr_0442 0.82 -0.6
481,032 + Psyr_0442 0.85 +2.0
481,038 + Psyr_0442 0.85 +4.0
481,038 + Psyr_0442 0.85 +0.3
481,039 - Psyr_0442 0.85 +1.2
481,039 - Psyr_0442 0.85 +1.0
481,258 - -0.7
481,258 - -1.4
481,258 - +2.5
481,258 - +2.6
481,258 - -2.3
481,600 + Psyr_0443 0.36 +1.3
481,600 + Psyr_0443 0.36 -2.6
481,601 - Psyr_0443 0.36 -1.8
481,601 - Psyr_0443 0.36 +1.6
481,601 - Psyr_0443 0.36 +1.1
481,603 + Psyr_0443 0.36 +1.7
481,604 - Psyr_0443 0.36 +1.3
481,604 - Psyr_0443 0.36 -1.6
481,853 - Psyr_0443 0.64 +1.5
481,853 - Psyr_0443 0.64 +2.8
481,916 - Psyr_0443 0.72 +2.0
481,998 - Psyr_0443 0.81 -0.0

Or see this region's nucleotide sequence