Experiment: apoplastic, sonication recovery; Green bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0380 and Psyr_0381 are separated by 88 nucleotides Psyr_0381 and Psyr_0382 overlap by 4 nucleotides Psyr_0382 and Psyr_0383 overlap by 4 nucleotides Psyr_0383 and Psyr_0384 are separated by 4 nucleotides Psyr_0384 and Psyr_0385 are separated by 44 nucleotides
Psyr_0380: Psyr_0380 - Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer, at 410,246 to 412,162
_0380
Psyr_0381: Psyr_0381 - Conserved hypothetical protein 46, at 412,251 to 412,958
_0381
Psyr_0382: Psyr_0382 - Sec-independent periplasmic protein translocase, at 412,955 to 413,755
_0382
Psyr_0383: Psyr_0383 - Twin-arginine translocation protein TatB, at 413,752 to 414,228
_0383
Psyr_0384: Psyr_0384 - Twin-arginine translocation protein TatA/E, at 414,233 to 414,508
_0384
Psyr_0385: Psyr_0385 - phosphoribosyl-ATP pyrophosphatase, at 414,553 to 414,885
_0385
Position (kb) 412
413
414 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 412.188 kb on + strand at 412.188 kb on + strand at 412.188 kb on + strand at 412.189 kb on - strand at 412.189 kb on - strand at 412.189 kb on - strand at 412.189 kb on - strand at 412.189 kb on - strand at 412.189 kb on - strand at 412.189 kb on - strand at 412.189 kb on - strand at 412.193 kb on - strand at 412.235 kb on - strand at 412.252 kb on + strand at 412.252 kb on + strand at 412.252 kb on + strand at 412.253 kb on - strand at 412.253 kb on - strand at 412.253 kb on - strand at 412.253 kb on - strand at 412.253 kb on - strand at 412.253 kb on - strand at 413.158 kb on - strand, within Psyr_0382 at 413.617 kb on - strand, within Psyr_0382 at 413.635 kb on - strand, within Psyr_0382 at 414.028 kb on - strand, within Psyr_0383 at 414.028 kb on - strand, within Psyr_0383 at 414.028 kb on - strand, within Psyr_0383 at 414.128 kb on - strand, within Psyr_0383 at 414.459 kb on - strand, within Psyr_0384 at 414.459 kb on - strand, within Psyr_0384 at 414.693 kb on - strand, within Psyr_0385
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic, sonication recovery; Green bean remove 412,188 + -3.0 412,188 + -3.3 412,188 + -0.9 412,189 - +1.1 412,189 - +0.3 412,189 - -2.8 412,189 - -1.4 412,189 - +0.6 412,189 - +0.1 412,189 - -1.4 412,189 - +1.3 412,193 - -0.9 412,235 - +2.1 412,252 + +0.5 412,252 + +2.5 412,252 + +1.7 412,253 - -0.7 412,253 - -0.9 412,253 - +1.3 412,253 - -2.4 412,253 - -1.8 412,253 - -1.5 413,158 - Psyr_0382 0.25 +0.3 413,617 - Psyr_0382 0.83 -1.9 413,635 - Psyr_0382 0.85 +1.5 414,028 - Psyr_0383 0.58 -0.7 414,028 - Psyr_0383 0.58 +2.2 414,028 - Psyr_0383 0.58 +0.2 414,128 - Psyr_0383 0.79 +3.1 414,459 - Psyr_0384 0.82 +0.3 414,459 - Psyr_0384 0.82 +0.9 414,693 - Psyr_0385 0.42 -1.9
Or see this region's nucleotide sequence