Experiment: apoplastic, sonication recovery; Green bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0348 and Psyr_0349 are separated by 56 nucleotides Psyr_0349 and Psyr_0350 overlap by 11 nucleotides Psyr_0350 and Psyr_0351 overlap by 4 nucleotides
Psyr_0348: Psyr_0348 - conserved hypothetical protein, at 372,774 to 373,400
_0348
Psyr_0349: Psyr_0349 - Binding-protein-dependent transport systems inner membrane component, at 373,457 to 374,101
_0349
Psyr_0350: Psyr_0350 - ABC transporter, at 374,091 to 375,221
_0350
Psyr_0351: Psyr_0351 - NLPA lipoprotein, at 375,218 to 376,006
_0351
Position (kb) 374
375
376 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 373.287 kb on - strand, within Psyr_0348 at 373.345 kb on + strand at 373.345 kb on + strand at 373.345 kb on + strand at 373.345 kb on + strand at 373.345 kb on + strand at 373.345 kb on + strand at 373.346 kb on - strand at 373.346 kb on - strand at 373.346 kb on - strand at 373.346 kb on - strand at 373.346 kb on - strand at 373.346 kb on - strand at 373.432 kb on + strand at 373.432 kb on + strand at 373.432 kb on + strand at 373.432 kb on + strand at 373.434 kb on + strand at 373.435 kb on - strand at 373.852 kb on - strand, within Psyr_0349 at 373.971 kb on + strand, within Psyr_0349 at 373.971 kb on + strand, within Psyr_0349 at 373.971 kb on + strand, within Psyr_0349 at 373.972 kb on - strand, within Psyr_0349 at 373.972 kb on - strand, within Psyr_0349 at 374.101 kb on + strand at 374.102 kb on - strand at 374.102 kb on - strand at 374.110 kb on - strand at 374.148 kb on + strand at 374.508 kb on - strand, within Psyr_0350 at 375.094 kb on + strand, within Psyr_0350 at 375.094 kb on + strand, within Psyr_0350 at 375.095 kb on - strand, within Psyr_0350 at 375.294 kb on + strand at 375.294 kb on + strand at 375.295 kb on - strand at 375.363 kb on + strand, within Psyr_0351 at 375.363 kb on + strand, within Psyr_0351 at 375.363 kb on + strand, within Psyr_0351 at 375.363 kb on + strand, within Psyr_0351 at 375.364 kb on - strand, within Psyr_0351 at 375.364 kb on - strand, within Psyr_0351 at 375.364 kb on - strand, within Psyr_0351 at 375.364 kb on - strand, within Psyr_0351 at 375.432 kb on + strand, within Psyr_0351 at 375.432 kb on + strand, within Psyr_0351 at 375.432 kb on + strand, within Psyr_0351 at 375.432 kb on + strand, within Psyr_0351 at 375.433 kb on - strand, within Psyr_0351 at 375.468 kb on + strand, within Psyr_0351 at 375.646 kb on + strand, within Psyr_0351 at 375.646 kb on + strand, within Psyr_0351 at 375.647 kb on - strand, within Psyr_0351 at 375.678 kb on + strand, within Psyr_0351 at 375.678 kb on + strand, within Psyr_0351 at 375.679 kb on - strand, within Psyr_0351 at 375.679 kb on - strand, within Psyr_0351 at 375.679 kb on - strand, within Psyr_0351 at 375.679 kb on - strand, within Psyr_0351 at 375.679 kb on - strand, within Psyr_0351 at 375.690 kb on + strand, within Psyr_0351 at 375.786 kb on + strand, within Psyr_0351 at 375.786 kb on + strand, within Psyr_0351 at 375.787 kb on - strand, within Psyr_0351 at 375.787 kb on - strand, within Psyr_0351 at 376.057 kb on - strand at 376.078 kb on + strand at 376.078 kb on + strand at 376.078 kb on + strand at 376.078 kb on + strand at 376.078 kb on + strand at 376.079 kb on - strand at 376.079 kb on - strand at 376.079 kb on - strand at 376.123 kb on + strand at 376.123 kb on + strand at 376.123 kb on + strand at 376.124 kb on - strand at 376.124 kb on - strand at 376.124 kb on - strand at 376.124 kb on - strand at 376.124 kb on - strand at 376.182 kb on + strand at 376.182 kb on + strand at 376.182 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic, sonication recovery; Green bean remove 373,287 - Psyr_0348 0.82 -2.1 373,345 + +1.1 373,345 + +3.4 373,345 + +0.9 373,345 + -0.1 373,345 + -3.8 373,345 + -3.1 373,346 - +0.7 373,346 - -3.0 373,346 - -2.2 373,346 - -0.5 373,346 - -1.0 373,346 - +0.8 373,432 + +1.0 373,432 + -0.3 373,432 + +2.5 373,432 + -2.0 373,434 + -2.8 373,435 - -0.2 373,852 - Psyr_0349 0.61 -1.7 373,971 + Psyr_0349 0.80 +1.6 373,971 + Psyr_0349 0.80 -0.3 373,971 + Psyr_0349 0.80 -2.5 373,972 - Psyr_0349 0.80 +3.9 373,972 - Psyr_0349 0.80 -1.8 374,101 + +4.0 374,102 - +2.9 374,102 - +0.5 374,110 - -0.9 374,148 + +1.7 374,508 - Psyr_0350 0.37 -0.5 375,094 + Psyr_0350 0.89 -0.7 375,094 + Psyr_0350 0.89 -2.5 375,095 - Psyr_0350 0.89 -0.8 375,294 + -0.4 375,294 + +3.2 375,295 - +0.8 375,363 + Psyr_0351 0.18 -1.3 375,363 + Psyr_0351 0.18 -0.9 375,363 + Psyr_0351 0.18 -2.7 375,363 + Psyr_0351 0.18 -0.6 375,364 - Psyr_0351 0.19 +1.2 375,364 - Psyr_0351 0.19 -2.6 375,364 - Psyr_0351 0.19 +2.4 375,364 - Psyr_0351 0.19 -2.0 375,432 + Psyr_0351 0.27 +2.1 375,432 + Psyr_0351 0.27 +0.5 375,432 + Psyr_0351 0.27 -0.0 375,432 + Psyr_0351 0.27 -1.6 375,433 - Psyr_0351 0.27 -3.1 375,468 + Psyr_0351 0.32 -0.5 375,646 + Psyr_0351 0.54 +2.1 375,646 + Psyr_0351 0.54 +1.4 375,647 - Psyr_0351 0.54 +0.3 375,678 + Psyr_0351 0.58 -0.1 375,678 + Psyr_0351 0.58 +0.8 375,679 - Psyr_0351 0.58 +0.3 375,679 - Psyr_0351 0.58 -2.4 375,679 - Psyr_0351 0.58 -0.8 375,679 - Psyr_0351 0.58 +0.5 375,679 - Psyr_0351 0.58 -1.7 375,690 + Psyr_0351 0.60 +1.8 375,786 + Psyr_0351 0.72 -1.2 375,786 + Psyr_0351 0.72 -1.3 375,787 - Psyr_0351 0.72 +0.5 375,787 - Psyr_0351 0.72 +1.5 376,057 - +0.8 376,078 + +1.6 376,078 + -2.3 376,078 + +1.1 376,078 + -0.1 376,078 + -1.0 376,079 - +0.6 376,079 - +0.9 376,079 - +2.4 376,123 + +1.2 376,123 + -2.1 376,123 + +3.7 376,124 - -0.3 376,124 - +0.6 376,124 - +0.0 376,124 - -0.4 376,124 - -2.4 376,182 + -1.1 376,182 + -2.4 376,182 + +2.4
Or see this region's nucleotide sequence