Experiment: apoplastic, sonication recovery; Green bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0339 and Psyr_0340 are separated by 38 nucleotides Psyr_0340 and Psyr_0341 are separated by 625 nucleotides Psyr_0341 and Psyr_0342 are separated by 89 nucleotides
Psyr_0339: Psyr_0339 - Binding-protein-dependent transport systems inner membrane component, at 361,263 to 362,198
_0339
Psyr_0340: Psyr_0340 - ABC transporter, periplasmic substrate-binding protein, at 362,237 to 363,256
_0340
Psyr_0341: Psyr_0341 - hypothetical protein, at 363,882 to 364,115
_0341
Psyr_0342: Psyr_0342 - hypothetical protein, at 364,205 to 365,200
_0342
Position (kb) 362
363
364 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 361.253 kb on + strand at 361.253 kb on + strand at 361.258 kb on - strand at 361.273 kb on + strand at 361.274 kb on - strand at 361.274 kb on - strand at 361.276 kb on + strand at 361.276 kb on + strand at 361.276 kb on + strand at 361.277 kb on - strand at 361.277 kb on - strand at 361.298 kb on + strand at 361.298 kb on + strand at 361.298 kb on + strand at 361.298 kb on + strand at 361.298 kb on + strand at 361.300 kb on + strand at 361.300 kb on + strand at 361.300 kb on + strand at 361.363 kb on - strand, within Psyr_0339 at 361.558 kb on - strand, within Psyr_0339 at 361.558 kb on - strand, within Psyr_0339 at 361.626 kb on + strand, within Psyr_0339 at 361.747 kb on + strand, within Psyr_0339 at 361.835 kb on + strand, within Psyr_0339 at 361.835 kb on + strand, within Psyr_0339 at 361.836 kb on - strand, within Psyr_0339 at 361.836 kb on - strand, within Psyr_0339 at 361.836 kb on - strand, within Psyr_0339 at 361.836 kb on - strand, within Psyr_0339 at 361.839 kb on + strand, within Psyr_0339 at 361.840 kb on - strand, within Psyr_0339 at 361.890 kb on + strand, within Psyr_0339 at 361.890 kb on + strand, within Psyr_0339 at 361.890 kb on + strand, within Psyr_0339 at 361.890 kb on + strand, within Psyr_0339 at 361.890 kb on + strand, within Psyr_0339 at 361.890 kb on + strand, within Psyr_0339 at 361.890 kb on + strand, within Psyr_0339 at 361.890 kb on + strand, within Psyr_0339 at 361.890 kb on + strand, within Psyr_0339 at 361.890 kb on + strand, within Psyr_0339 at 361.890 kb on + strand, within Psyr_0339 at 361.890 kb on + strand, within Psyr_0339 at 361.890 kb on + strand, within Psyr_0339 at 361.890 kb on + strand, within Psyr_0339 at 361.891 kb on - strand, within Psyr_0339 at 361.891 kb on - strand, within Psyr_0339 at 361.891 kb on - strand, within Psyr_0339 at 361.891 kb on - strand, within Psyr_0339 at 361.891 kb on - strand, within Psyr_0339 at 361.891 kb on - strand, within Psyr_0339 at 361.891 kb on - strand, within Psyr_0339 at 361.891 kb on - strand, within Psyr_0339 at 362.052 kb on + strand, within Psyr_0339 at 362.052 kb on + strand, within Psyr_0339 at 362.052 kb on + strand, within Psyr_0339 at 362.052 kb on + strand, within Psyr_0339 at 362.052 kb on + strand, within Psyr_0339 at 362.053 kb on - strand, within Psyr_0339 at 362.053 kb on - strand, within Psyr_0339 at 362.053 kb on - strand, within Psyr_0339 at 362.053 kb on - strand, within Psyr_0339 at 362.079 kb on + strand, within Psyr_0339 at 362.079 kb on + strand, within Psyr_0339 at 362.079 kb on + strand, within Psyr_0339 at 362.079 kb on + strand, within Psyr_0339 at 362.079 kb on + strand, within Psyr_0339 at 362.079 kb on + strand, within Psyr_0339 at 362.079 kb on + strand, within Psyr_0339 at 362.079 kb on + strand, within Psyr_0339 at 362.080 kb on - strand, within Psyr_0339 at 362.080 kb on - strand, within Psyr_0339 at 362.080 kb on - strand, within Psyr_0339 at 362.080 kb on - strand, within Psyr_0339 at 362.080 kb on - strand, within Psyr_0339 at 362.080 kb on - strand, within Psyr_0339 at 362.080 kb on - strand, within Psyr_0339 at 362.218 kb on + strand at 362.606 kb on + strand, within Psyr_0340 at 362.606 kb on + strand, within Psyr_0340 at 362.606 kb on + strand, within Psyr_0340 at 362.607 kb on - strand, within Psyr_0340 at 362.607 kb on - strand, within Psyr_0340 at 362.607 kb on - strand, within Psyr_0340 at 362.607 kb on - strand, within Psyr_0340 at 362.607 kb on - strand, within Psyr_0340 at 362.747 kb on + strand, within Psyr_0340 at 362.747 kb on + strand, within Psyr_0340 at 362.747 kb on + strand, within Psyr_0340 at 362.747 kb on + strand, within Psyr_0340 at 362.748 kb on - strand, within Psyr_0340 at 362.748 kb on - strand, within Psyr_0340 at 362.748 kb on - strand, within Psyr_0340 at 362.748 kb on - strand, within Psyr_0340 at 362.748 kb on - strand, within Psyr_0340 at 362.887 kb on + strand, within Psyr_0340 at 362.887 kb on + strand, within Psyr_0340 at 362.887 kb on + strand, within Psyr_0340 at 362.887 kb on + strand, within Psyr_0340 at 362.887 kb on + strand, within Psyr_0340 at 362.887 kb on + strand, within Psyr_0340 at 362.888 kb on - strand, within Psyr_0340 at 362.888 kb on - strand, within Psyr_0340 at 362.888 kb on - strand, within Psyr_0340 at 362.903 kb on + strand, within Psyr_0340 at 362.903 kb on + strand, within Psyr_0340 at 362.903 kb on + strand, within Psyr_0340 at 362.904 kb on - strand, within Psyr_0340 at 362.904 kb on - strand, within Psyr_0340 at 362.942 kb on + strand, within Psyr_0340 at 362.942 kb on + strand, within Psyr_0340 at 362.942 kb on + strand, within Psyr_0340 at 362.943 kb on - strand, within Psyr_0340 at 362.943 kb on - strand, within Psyr_0340 at 362.943 kb on - strand, within Psyr_0340 at 362.943 kb on - strand, within Psyr_0340 at 362.943 kb on - strand, within Psyr_0340 at 362.943 kb on - strand, within Psyr_0340 at 362.981 kb on + strand, within Psyr_0340 at 362.981 kb on + strand, within Psyr_0340 at 362.981 kb on + strand, within Psyr_0340 at 362.982 kb on - strand, within Psyr_0340 at 362.982 kb on - strand, within Psyr_0340 at 362.993 kb on + strand, within Psyr_0340 at 362.993 kb on + strand, within Psyr_0340 at 362.993 kb on + strand, within Psyr_0340 at 362.994 kb on - strand, within Psyr_0340 at 362.994 kb on - strand, within Psyr_0340 at 363.056 kb on + strand, within Psyr_0340 at 363.056 kb on + strand, within Psyr_0340 at 363.056 kb on + strand, within Psyr_0340 at 363.056 kb on + strand, within Psyr_0340 at 363.056 kb on + strand, within Psyr_0340 at 363.056 kb on + strand, within Psyr_0340 at 363.056 kb on + strand, within Psyr_0340 at 363.057 kb on - strand, within Psyr_0340 at 363.057 kb on - strand, within Psyr_0340 at 363.057 kb on - strand, within Psyr_0340 at 363.057 kb on - strand, within Psyr_0340 at 363.057 kb on - strand, within Psyr_0340 at 363.159 kb on - strand at 363.159 kb on - strand at 363.323 kb on + strand at 363.323 kb on + strand at 363.323 kb on + strand at 363.323 kb on + strand at 363.324 kb on - strand at 363.324 kb on - strand at 363.348 kb on - strand at 363.401 kb on + strand at 363.401 kb on + strand at 363.401 kb on + strand at 363.401 kb on + strand at 363.402 kb on - strand at 363.452 kb on + strand at 363.453 kb on - strand at 363.453 kb on - strand at 363.453 kb on - strand at 363.453 kb on - strand at 363.453 kb on - strand at 363.453 kb on - strand at 363.453 kb on - strand at 363.544 kb on - strand at 363.606 kb on + strand at 363.606 kb on + strand at 363.607 kb on - strand at 363.658 kb on + strand at 363.658 kb on + strand at 363.658 kb on + strand at 363.658 kb on + strand at 363.659 kb on - strand at 363.659 kb on - strand at 363.659 kb on - strand at 363.659 kb on - strand at 363.659 kb on - strand at 363.839 kb on - strand at 363.869 kb on - strand at 363.869 kb on - strand at 363.876 kb on + strand at 363.877 kb on - strand at 363.952 kb on + strand, within Psyr_0341 at 363.952 kb on + strand, within Psyr_0341 at 363.952 kb on + strand, within Psyr_0341 at 363.952 kb on + strand, within Psyr_0341 at 363.953 kb on - strand, within Psyr_0341 at 363.953 kb on - strand, within Psyr_0341 at 363.953 kb on - strand, within Psyr_0341 at 363.953 kb on - strand, within Psyr_0341 at 363.953 kb on - strand, within Psyr_0341 at 363.979 kb on - strand, within Psyr_0341 at 364.113 kb on + strand at 364.113 kb on + strand at 364.122 kb on + strand at 364.122 kb on + strand at 364.122 kb on + strand at 364.122 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic, sonication recovery; Green bean remove 361,253 + -1.5 361,253 + +0.4 361,258 - +3.8 361,273 + -1.0 361,274 - +3.2 361,274 - +1.1 361,276 + -0.0 361,276 + +1.1 361,276 + +1.4 361,277 - +0.4 361,277 - -1.1 361,298 + -0.5 361,298 + +2.7 361,298 + -2.1 361,298 + -1.4 361,298 + -0.3 361,300 + +0.5 361,300 + +1.0 361,300 + -0.8 361,363 - Psyr_0339 0.11 -0.4 361,558 - Psyr_0339 0.32 +2.5 361,558 - Psyr_0339 0.32 +0.8 361,626 + Psyr_0339 0.39 -2.5 361,747 + Psyr_0339 0.52 -1.5 361,835 + Psyr_0339 0.61 -1.6 361,835 + Psyr_0339 0.61 -0.8 361,836 - Psyr_0339 0.61 +4.8 361,836 - Psyr_0339 0.61 -0.6 361,836 - Psyr_0339 0.61 -3.7 361,836 - Psyr_0339 0.61 -1.0 361,839 + Psyr_0339 0.62 -0.6 361,840 - Psyr_0339 0.62 +0.5 361,890 + Psyr_0339 0.67 -0.0 361,890 + Psyr_0339 0.67 -0.4 361,890 + Psyr_0339 0.67 +3.1 361,890 + Psyr_0339 0.67 +1.2 361,890 + Psyr_0339 0.67 +1.2 361,890 + Psyr_0339 0.67 +2.3 361,890 + Psyr_0339 0.67 +2.0 361,890 + Psyr_0339 0.67 +2.4 361,890 + Psyr_0339 0.67 +1.7 361,890 + Psyr_0339 0.67 +1.9 361,890 + Psyr_0339 0.67 -0.9 361,890 + Psyr_0339 0.67 +1.8 361,890 + Psyr_0339 0.67 -0.0 361,890 + Psyr_0339 0.67 -1.6 361,891 - Psyr_0339 0.67 -2.7 361,891 - Psyr_0339 0.67 +0.3 361,891 - Psyr_0339 0.67 +1.0 361,891 - Psyr_0339 0.67 -2.0 361,891 - Psyr_0339 0.67 +0.6 361,891 - Psyr_0339 0.67 -2.0 361,891 - Psyr_0339 0.67 -2.0 361,891 - Psyr_0339 0.67 -2.7 362,052 + Psyr_0339 0.84 -2.0 362,052 + Psyr_0339 0.84 +1.3 362,052 + Psyr_0339 0.84 +2.4 362,052 + Psyr_0339 0.84 +0.8 362,052 + Psyr_0339 0.84 +0.6 362,053 - Psyr_0339 0.84 +2.5 362,053 - Psyr_0339 0.84 -2.9 362,053 - Psyr_0339 0.84 -0.0 362,053 - Psyr_0339 0.84 -1.8 362,079 + Psyr_0339 0.87 +0.3 362,079 + Psyr_0339 0.87 +1.9 362,079 + Psyr_0339 0.87 -3.4 362,079 + Psyr_0339 0.87 +1.6 362,079 + Psyr_0339 0.87 +3.1 362,079 + Psyr_0339 0.87 +0.4 362,079 + Psyr_0339 0.87 -0.1 362,079 + Psyr_0339 0.87 +1.3 362,080 - Psyr_0339 0.87 +1.4 362,080 - Psyr_0339 0.87 -2.4 362,080 - Psyr_0339 0.87 +1.4 362,080 - Psyr_0339 0.87 -0.9 362,080 - Psyr_0339 0.87 -0.3 362,080 - Psyr_0339 0.87 -0.7 362,080 - Psyr_0339 0.87 -2.8 362,218 + -0.4 362,606 + Psyr_0340 0.36 -1.4 362,606 + Psyr_0340 0.36 -1.8 362,606 + Psyr_0340 0.36 +3.4 362,607 - Psyr_0340 0.36 +2.3 362,607 - Psyr_0340 0.36 +0.5 362,607 - Psyr_0340 0.36 -0.1 362,607 - Psyr_0340 0.36 +1.2 362,607 - Psyr_0340 0.36 -1.5 362,747 + Psyr_0340 0.50 -0.6 362,747 + Psyr_0340 0.50 +0.7 362,747 + Psyr_0340 0.50 -1.2 362,747 + Psyr_0340 0.50 -0.9 362,748 - Psyr_0340 0.50 -1.4 362,748 - Psyr_0340 0.50 +1.4 362,748 - Psyr_0340 0.50 -2.2 362,748 - Psyr_0340 0.50 +2.8 362,748 - Psyr_0340 0.50 +0.1 362,887 + Psyr_0340 0.64 -1.8 362,887 + Psyr_0340 0.64 +1.9 362,887 + Psyr_0340 0.64 -1.8 362,887 + Psyr_0340 0.64 +0.7 362,887 + Psyr_0340 0.64 +0.0 362,887 + Psyr_0340 0.64 -1.7 362,888 - Psyr_0340 0.64 -2.8 362,888 - Psyr_0340 0.64 +0.8 362,888 - Psyr_0340 0.64 +0.3 362,903 + Psyr_0340 0.65 -2.1 362,903 + Psyr_0340 0.65 -1.4 362,903 + Psyr_0340 0.65 -3.3 362,904 - Psyr_0340 0.65 -0.2 362,904 - Psyr_0340 0.65 -0.2 362,942 + Psyr_0340 0.69 +1.3 362,942 + Psyr_0340 0.69 -1.4 362,942 + Psyr_0340 0.69 -2.1 362,943 - Psyr_0340 0.69 -2.2 362,943 - Psyr_0340 0.69 +1.6 362,943 - Psyr_0340 0.69 -0.4 362,943 - Psyr_0340 0.69 -1.1 362,943 - Psyr_0340 0.69 +1.3 362,943 - Psyr_0340 0.69 -1.1 362,981 + Psyr_0340 0.73 +1.2 362,981 + Psyr_0340 0.73 -0.3 362,981 + Psyr_0340 0.73 +0.6 362,982 - Psyr_0340 0.73 +0.3 362,982 - Psyr_0340 0.73 -0.9 362,993 + Psyr_0340 0.74 +0.3 362,993 + Psyr_0340 0.74 +1.6 362,993 + Psyr_0340 0.74 +1.7 362,994 - Psyr_0340 0.74 -1.2 362,994 - Psyr_0340 0.74 -2.0 363,056 + Psyr_0340 0.80 +1.9 363,056 + Psyr_0340 0.80 -2.0 363,056 + Psyr_0340 0.80 +3.5 363,056 + Psyr_0340 0.80 +0.0 363,056 + Psyr_0340 0.80 +2.7 363,056 + Psyr_0340 0.80 +2.6 363,056 + Psyr_0340 0.80 +1.1 363,057 - Psyr_0340 0.80 +0.8 363,057 - Psyr_0340 0.80 -0.9 363,057 - Psyr_0340 0.80 +2.4 363,057 - Psyr_0340 0.80 +1.9 363,057 - Psyr_0340 0.80 -2.6 363,159 - +2.5 363,159 - +0.7 363,323 + +3.1 363,323 + -2.3 363,323 + +1.6 363,323 + +6.1 363,324 - -0.5 363,324 - -3.0 363,348 - +0.1 363,401 + -1.1 363,401 + -0.2 363,401 + -0.2 363,401 + +0.3 363,402 - -0.4 363,452 + +2.9 363,453 - -1.5 363,453 - +4.5 363,453 - +3.3 363,453 - +1.5 363,453 - -0.4 363,453 - +3.0 363,453 - +0.8 363,544 - -1.6 363,606 + -0.4 363,606 + +2.2 363,607 - +2.1 363,658 + -2.6 363,658 + +1.4 363,658 + -0.0 363,658 + -0.4 363,659 - -0.4 363,659 - +0.4 363,659 - +1.9 363,659 - -1.2 363,659 - -1.7 363,839 - -1.0 363,869 - +3.7 363,869 - +0.6 363,876 + -0.4 363,877 - -0.2 363,952 + Psyr_0341 0.30 -0.1 363,952 + Psyr_0341 0.30 -0.6 363,952 + Psyr_0341 0.30 -0.3 363,952 + Psyr_0341 0.30 -2.0 363,953 - Psyr_0341 0.30 -0.5 363,953 - Psyr_0341 0.30 -1.9 363,953 - Psyr_0341 0.30 +2.2 363,953 - Psyr_0341 0.30 +0.7 363,953 - Psyr_0341 0.30 +1.0 363,979 - Psyr_0341 0.41 +1.0 364,113 + -0.1 364,113 + +1.1 364,122 + +1.1 364,122 + -1.4 364,122 + +0.9 364,122 + -0.1
Or see this region's nucleotide sequence