Experiment: apoplastic, sonication recovery; Green bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0335 and Psyr_0336 are separated by 112 nucleotides Psyr_0336 and Psyr_0337 are separated by 328 nucleotides
Psyr_0335: Psyr_0335 - membrane protein, putative, at 354,656 to 355,882
_0335
Psyr_0336: Psyr_0336 - Outer membrane autotransporter barrel, at 355,995 to 358,982
_0336
Psyr_0337: Psyr_0337 - Taurine dioxygenase, at 359,311 to 360,207
_0337
Position (kb) 355
356
357
358
359 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 355.019 kb on + strand, within Psyr_0335 at 355.019 kb on + strand, within Psyr_0335 at 355.019 kb on + strand, within Psyr_0335 at 355.020 kb on - strand, within Psyr_0335 at 355.020 kb on - strand, within Psyr_0335 at 355.020 kb on - strand, within Psyr_0335 at 355.021 kb on + strand, within Psyr_0335 at 355.021 kb on + strand, within Psyr_0335 at 355.022 kb on - strand, within Psyr_0335 at 355.034 kb on + strand, within Psyr_0335 at 355.034 kb on + strand, within Psyr_0335 at 355.034 kb on + strand, within Psyr_0335 at 355.035 kb on - strand, within Psyr_0335 at 355.035 kb on - strand, within Psyr_0335 at 355.040 kb on + strand, within Psyr_0335 at 355.040 kb on + strand, within Psyr_0335 at 355.040 kb on + strand, within Psyr_0335 at 355.041 kb on - strand, within Psyr_0335 at 355.041 kb on - strand, within Psyr_0335 at 355.058 kb on + strand, within Psyr_0335 at 355.059 kb on - strand, within Psyr_0335 at 355.125 kb on + strand, within Psyr_0335 at 355.125 kb on + strand, within Psyr_0335 at 355.126 kb on - strand, within Psyr_0335 at 355.126 kb on - strand, within Psyr_0335 at 355.388 kb on + strand, within Psyr_0335 at 355.388 kb on + strand, within Psyr_0335 at 355.388 kb on + strand, within Psyr_0335 at 355.389 kb on - strand, within Psyr_0335 at 355.409 kb on + strand, within Psyr_0335 at 355.409 kb on + strand, within Psyr_0335 at 355.409 kb on + strand, within Psyr_0335 at 355.409 kb on + strand, within Psyr_0335 at 355.409 kb on + strand, within Psyr_0335 at 355.409 kb on + strand, within Psyr_0335 at 355.409 kb on + strand, within Psyr_0335 at 355.409 kb on + strand, within Psyr_0335 at 355.410 kb on - strand, within Psyr_0335 at 355.410 kb on - strand, within Psyr_0335 at 355.410 kb on - strand, within Psyr_0335 at 355.410 kb on - strand, within Psyr_0335 at 355.410 kb on - strand, within Psyr_0335 at 355.483 kb on + strand, within Psyr_0335 at 355.534 kb on + strand, within Psyr_0335 at 355.534 kb on + strand, within Psyr_0335 at 355.535 kb on - strand, within Psyr_0335 at 355.535 kb on - strand, within Psyr_0335 at 355.616 kb on + strand, within Psyr_0335 at 355.616 kb on + strand, within Psyr_0335 at 355.616 kb on + strand, within Psyr_0335 at 355.617 kb on - strand, within Psyr_0335 at 355.617 kb on - strand, within Psyr_0335 at 355.617 kb on - strand, within Psyr_0335 at 355.617 kb on - strand, within Psyr_0335 at 355.945 kb on + strand at 355.946 kb on - strand at 355.996 kb on + strand at 355.997 kb on - strand at 355.997 kb on - strand at 356.085 kb on - strand at 356.209 kb on + strand at 356.379 kb on + strand, within Psyr_0336 at 356.379 kb on + strand, within Psyr_0336 at 356.379 kb on + strand, within Psyr_0336 at 356.379 kb on + strand, within Psyr_0336 at 356.379 kb on + strand, within Psyr_0336 at 356.379 kb on + strand, within Psyr_0336 at 356.379 kb on + strand, within Psyr_0336 at 356.380 kb on - strand, within Psyr_0336 at 356.435 kb on - strand, within Psyr_0336 at 356.473 kb on + strand, within Psyr_0336 at 356.473 kb on + strand, within Psyr_0336 at 356.473 kb on + strand, within Psyr_0336 at 356.473 kb on + strand, within Psyr_0336 at 356.473 kb on + strand, within Psyr_0336 at 356.473 kb on + strand, within Psyr_0336 at 356.474 kb on - strand, within Psyr_0336 at 356.474 kb on - strand, within Psyr_0336 at 356.474 kb on - strand, within Psyr_0336 at 356.608 kb on + strand, within Psyr_0336 at 356.608 kb on + strand, within Psyr_0336 at 356.608 kb on + strand, within Psyr_0336 at 356.609 kb on - strand, within Psyr_0336 at 356.609 kb on - strand, within Psyr_0336 at 356.609 kb on - strand, within Psyr_0336 at 356.609 kb on - strand, within Psyr_0336 at 357.142 kb on + strand, within Psyr_0336 at 357.142 kb on + strand, within Psyr_0336 at 357.142 kb on + strand, within Psyr_0336 at 357.142 kb on + strand, within Psyr_0336 at 357.142 kb on + strand, within Psyr_0336 at 357.143 kb on - strand, within Psyr_0336 at 357.143 kb on - strand, within Psyr_0336 at 357.143 kb on - strand, within Psyr_0336 at 357.143 kb on - strand, within Psyr_0336 at 357.143 kb on - strand, within Psyr_0336 at 357.143 kb on - strand, within Psyr_0336 at 357.282 kb on - strand, within Psyr_0336 at 357.282 kb on - strand, within Psyr_0336 at 357.350 kb on - strand, within Psyr_0336 at 357.350 kb on - strand, within Psyr_0336 at 357.663 kb on + strand, within Psyr_0336 at 357.754 kb on + strand, within Psyr_0336 at 357.754 kb on + strand, within Psyr_0336 at 357.755 kb on - strand, within Psyr_0336 at 357.922 kb on + strand, within Psyr_0336 at 357.922 kb on + strand, within Psyr_0336 at 357.923 kb on - strand, within Psyr_0336 at 357.941 kb on - strand, within Psyr_0336 at 358.108 kb on + strand, within Psyr_0336 at 358.109 kb on - strand, within Psyr_0336 at 358.109 kb on - strand, within Psyr_0336 at 358.126 kb on + strand, within Psyr_0336 at 358.126 kb on + strand, within Psyr_0336 at 358.127 kb on - strand, within Psyr_0336 at 358.127 kb on - strand, within Psyr_0336 at 358.127 kb on - strand, within Psyr_0336 at 358.226 kb on - strand, within Psyr_0336 at 358.300 kb on + strand, within Psyr_0336 at 358.300 kb on + strand, within Psyr_0336 at 358.300 kb on + strand, within Psyr_0336 at 358.300 kb on + strand, within Psyr_0336 at 358.300 kb on + strand, within Psyr_0336 at 358.301 kb on - strand, within Psyr_0336 at 358.432 kb on + strand, within Psyr_0336 at 358.433 kb on - strand, within Psyr_0336 at 358.433 kb on - strand, within Psyr_0336 at 358.433 kb on - strand, within Psyr_0336 at 358.444 kb on + strand, within Psyr_0336 at 358.444 kb on + strand, within Psyr_0336 at 358.445 kb on - strand, within Psyr_0336 at 358.445 kb on - strand, within Psyr_0336 at 358.445 kb on - strand, within Psyr_0336 at 358.582 kb on + strand, within Psyr_0336 at 358.583 kb on - strand, within Psyr_0336 at 358.583 kb on - strand, within Psyr_0336 at 358.583 kb on - strand, within Psyr_0336 at 358.693 kb on + strand at 358.693 kb on + strand at 358.727 kb on + strand at 358.727 kb on + strand at 358.728 kb on - strand at 358.757 kb on + strand at 358.757 kb on + strand at 358.757 kb on + strand at 358.757 kb on + strand at 358.757 kb on + strand at 358.758 kb on - strand at 358.758 kb on - strand at 358.759 kb on + strand at 358.759 kb on + strand at 358.759 kb on + strand at 358.759 kb on + strand at 358.760 kb on - strand at 358.760 kb on - strand at 358.760 kb on - strand at 358.760 kb on - strand at 358.760 kb on - strand at 358.760 kb on - strand at 358.760 kb on - strand at 358.760 kb on - strand at 358.760 kb on - strand at 358.798 kb on + strand at 358.798 kb on + strand at 358.799 kb on - strand at 358.799 kb on - strand at 358.991 kb on + strand at 358.991 kb on + strand at 358.991 kb on + strand at 358.991 kb on + strand at 358.991 kb on + strand at 358.992 kb on - strand at 358.992 kb on - strand at 358.992 kb on - strand at 358.992 kb on - strand at 359.046 kb on + strand at 359.047 kb on - strand at 359.064 kb on + strand at 359.064 kb on + strand at 359.064 kb on + strand at 359.064 kb on + strand at 359.064 kb on + strand at 359.064 kb on + strand at 359.064 kb on + strand at 359.064 kb on + strand at 359.064 kb on + strand at 359.064 kb on + strand at 359.065 kb on - strand at 359.065 kb on - strand at 359.065 kb on - strand at 359.065 kb on - strand at 359.065 kb on - strand at 359.065 kb on - strand at 359.065 kb on - strand at 359.065 kb on - strand at 359.065 kb on - strand at 359.065 kb on - strand at 359.065 kb on - strand at 359.065 kb on - strand at 359.065 kb on - strand at 359.065 kb on - strand at 359.065 kb on - strand at 359.065 kb on - strand at 359.065 kb on - strand at 359.065 kb on - strand at 359.065 kb on - strand at 359.065 kb on - strand at 359.118 kb on + strand at 359.146 kb on + strand at 359.147 kb on - strand at 359.147 kb on - strand at 359.147 kb on - strand at 359.158 kb on + strand at 359.158 kb on + strand at 359.158 kb on + strand at 359.158 kb on + strand at 359.158 kb on + strand at 359.158 kb on + strand at 359.158 kb on + strand at 359.158 kb on + strand at 359.159 kb on - strand at 359.159 kb on - strand at 359.159 kb on - strand at 359.159 kb on - strand at 359.159 kb on - strand at 359.159 kb on - strand at 359.159 kb on - strand at 359.159 kb on - strand at 359.159 kb on - strand at 359.176 kb on + strand at 359.176 kb on + strand at 359.176 kb on + strand at 359.176 kb on + strand at 359.176 kb on + strand at 359.176 kb on + strand at 359.176 kb on + strand at 359.176 kb on + strand at 359.177 kb on - strand at 359.177 kb on - strand at 359.177 kb on - strand at 359.177 kb on - strand at 359.191 kb on + strand at 359.192 kb on - strand at 359.659 kb on + strand, within Psyr_0337 at 359.659 kb on + strand, within Psyr_0337 at 359.660 kb on - strand, within Psyr_0337 at 359.680 kb on + strand, within Psyr_0337 at 359.680 kb on + strand, within Psyr_0337 at 359.680 kb on + strand, within Psyr_0337 at 359.680 kb on + strand, within Psyr_0337 at 359.680 kb on + strand, within Psyr_0337 at 359.681 kb on - strand, within Psyr_0337 at 359.681 kb on - strand, within Psyr_0337 at 359.681 kb on - strand, within Psyr_0337 at 359.681 kb on - strand, within Psyr_0337 at 359.681 kb on - strand, within Psyr_0337 at 359.714 kb on - strand, within Psyr_0337 at 359.833 kb on + strand, within Psyr_0337 at 359.833 kb on + strand, within Psyr_0337 at 359.834 kb on - strand, within Psyr_0337 at 359.834 kb on - strand, within Psyr_0337 at 359.845 kb on + strand, within Psyr_0337 at 359.909 kb on + strand, within Psyr_0337 at 359.910 kb on - strand, within Psyr_0337 at 359.910 kb on - strand, within Psyr_0337 at 359.910 kb on - strand, within Psyr_0337 at 359.910 kb on - strand, within Psyr_0337
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic, sonication recovery; Green bean remove 355,019 + Psyr_0335 0.30 +1.1 355,019 + Psyr_0335 0.30 +3.9 355,019 + Psyr_0335 0.30 +2.5 355,020 - Psyr_0335 0.30 +2.3 355,020 - Psyr_0335 0.30 -2.4 355,020 - Psyr_0335 0.30 -0.5 355,021 + Psyr_0335 0.30 -0.8 355,021 + Psyr_0335 0.30 -0.6 355,022 - Psyr_0335 0.30 +0.3 355,034 + Psyr_0335 0.31 -0.6 355,034 + Psyr_0335 0.31 +1.1 355,034 + Psyr_0335 0.31 +0.7 355,035 - Psyr_0335 0.31 -0.0 355,035 - Psyr_0335 0.31 -0.5 355,040 + Psyr_0335 0.31 -0.0 355,040 + Psyr_0335 0.31 -0.5 355,040 + Psyr_0335 0.31 +3.4 355,041 - Psyr_0335 0.31 -3.1 355,041 - Psyr_0335 0.31 -2.1 355,058 + Psyr_0335 0.33 +3.1 355,059 - Psyr_0335 0.33 +0.7 355,125 + Psyr_0335 0.38 +0.3 355,125 + Psyr_0335 0.38 +2.5 355,126 - Psyr_0335 0.38 -1.1 355,126 - Psyr_0335 0.38 -1.2 355,388 + Psyr_0335 0.60 -0.4 355,388 + Psyr_0335 0.60 -0.2 355,388 + Psyr_0335 0.60 -1.5 355,389 - Psyr_0335 0.60 -1.4 355,409 + Psyr_0335 0.61 +1.5 355,409 + Psyr_0335 0.61 -0.6 355,409 + Psyr_0335 0.61 +0.1 355,409 + Psyr_0335 0.61 -1.5 355,409 + Psyr_0335 0.61 -0.4 355,409 + Psyr_0335 0.61 -1.7 355,409 + Psyr_0335 0.61 +0.4 355,409 + Psyr_0335 0.61 -1.2 355,410 - Psyr_0335 0.61 +1.3 355,410 - Psyr_0335 0.61 -0.1 355,410 - Psyr_0335 0.61 +1.2 355,410 - Psyr_0335 0.61 +0.7 355,410 - Psyr_0335 0.61 -1.9 355,483 + Psyr_0335 0.67 -0.8 355,534 + Psyr_0335 0.72 -0.0 355,534 + Psyr_0335 0.72 +0.6 355,535 - Psyr_0335 0.72 +4.1 355,535 - Psyr_0335 0.72 +0.9 355,616 + Psyr_0335 0.78 +0.2 355,616 + Psyr_0335 0.78 +1.3 355,616 + Psyr_0335 0.78 -0.8 355,617 - Psyr_0335 0.78 -0.4 355,617 - Psyr_0335 0.78 -1.6 355,617 - Psyr_0335 0.78 +1.6 355,617 - Psyr_0335 0.78 +0.1 355,945 + +2.8 355,946 - +1.7 355,996 + +0.4 355,997 - +1.7 355,997 - -1.3 356,085 - -1.6 356,209 + +1.2 356,379 + Psyr_0336 0.13 -2.2 356,379 + Psyr_0336 0.13 -0.8 356,379 + Psyr_0336 0.13 -1.2 356,379 + Psyr_0336 0.13 +0.1 356,379 + Psyr_0336 0.13 -1.4 356,379 + Psyr_0336 0.13 -3.6 356,379 + Psyr_0336 0.13 -1.5 356,380 - Psyr_0336 0.13 +0.1 356,435 - Psyr_0336 0.15 -0.8 356,473 + Psyr_0336 0.16 -1.3 356,473 + Psyr_0336 0.16 -1.2 356,473 + Psyr_0336 0.16 -1.2 356,473 + Psyr_0336 0.16 -0.2 356,473 + Psyr_0336 0.16 -1.7 356,473 + Psyr_0336 0.16 +2.3 356,474 - Psyr_0336 0.16 +0.9 356,474 - Psyr_0336 0.16 -1.1 356,474 - Psyr_0336 0.16 +1.9 356,608 + Psyr_0336 0.21 -2.6 356,608 + Psyr_0336 0.21 -3.0 356,608 + Psyr_0336 0.21 +0.8 356,609 - Psyr_0336 0.21 -0.6 356,609 - Psyr_0336 0.21 +1.8 356,609 - Psyr_0336 0.21 -1.7 356,609 - Psyr_0336 0.21 -0.2 357,142 + Psyr_0336 0.38 -1.7 357,142 + Psyr_0336 0.38 +1.0 357,142 + Psyr_0336 0.38 -0.6 357,142 + Psyr_0336 0.38 -1.5 357,142 + Psyr_0336 0.38 -1.7 357,143 - Psyr_0336 0.38 -0.4 357,143 - Psyr_0336 0.38 +0.9 357,143 - Psyr_0336 0.38 -1.2 357,143 - Psyr_0336 0.38 -1.0 357,143 - Psyr_0336 0.38 +0.3 357,143 - Psyr_0336 0.38 +1.7 357,282 - Psyr_0336 0.43 -0.6 357,282 - Psyr_0336 0.43 -2.0 357,350 - Psyr_0336 0.45 +1.0 357,350 - Psyr_0336 0.45 -1.0 357,663 + Psyr_0336 0.56 +0.5 357,754 + Psyr_0336 0.59 -2.0 357,754 + Psyr_0336 0.59 +0.0 357,755 - Psyr_0336 0.59 -1.3 357,922 + Psyr_0336 0.64 -0.8 357,922 + Psyr_0336 0.64 -2.4 357,923 - Psyr_0336 0.65 -1.9 357,941 - Psyr_0336 0.65 -1.0 358,108 + Psyr_0336 0.71 -1.5 358,109 - Psyr_0336 0.71 -1.0 358,109 - Psyr_0336 0.71 -1.0 358,126 + Psyr_0336 0.71 -1.0 358,126 + Psyr_0336 0.71 +1.4 358,127 - Psyr_0336 0.71 -2.2 358,127 - Psyr_0336 0.71 -0.0 358,127 - Psyr_0336 0.71 +0.1 358,226 - Psyr_0336 0.75 -1.9 358,300 + Psyr_0336 0.77 -0.4 358,300 + Psyr_0336 0.77 -2.3 358,300 + Psyr_0336 0.77 -0.8 358,300 + Psyr_0336 0.77 -2.5 358,300 + Psyr_0336 0.77 -2.6 358,301 - Psyr_0336 0.77 -0.3 358,432 + Psyr_0336 0.82 +0.4 358,433 - Psyr_0336 0.82 +0.1 358,433 - Psyr_0336 0.82 -2.3 358,433 - Psyr_0336 0.82 -1.2 358,444 + Psyr_0336 0.82 +0.6 358,444 + Psyr_0336 0.82 +0.5 358,445 - Psyr_0336 0.82 -0.6 358,445 - Psyr_0336 0.82 +1.0 358,445 - Psyr_0336 0.82 -1.3 358,582 + Psyr_0336 0.87 -2.4 358,583 - Psyr_0336 0.87 -1.3 358,583 - Psyr_0336 0.87 -1.0 358,583 - Psyr_0336 0.87 -1.5 358,693 + +0.0 358,693 + +1.3 358,727 + +1.1 358,727 + -0.4 358,728 - +2.4 358,757 + -1.1 358,757 + +0.3 358,757 + -2.1 358,757 + -1.0 358,757 + +1.0 358,758 - -0.9 358,758 - -1.2 358,759 + +0.9 358,759 + -1.2 358,759 + -0.4 358,759 + -1.2 358,760 - +1.5 358,760 - -1.6 358,760 - +1.2 358,760 - -1.5 358,760 - -3.0 358,760 - +2.6 358,760 - -2.6 358,760 - +0.1 358,760 - -0.1 358,798 + -2.9 358,798 + -0.8 358,799 - -0.9 358,799 - +0.1 358,991 + -1.0 358,991 + +4.5 358,991 + +1.5 358,991 + +0.3 358,991 + +2.3 358,992 - +1.4 358,992 - -1.9 358,992 - +2.2 358,992 - -2.4 359,046 + -2.1 359,047 - -2.9 359,064 + +2.2 359,064 + -0.4 359,064 + -0.0 359,064 + -3.4 359,064 + +1.0 359,064 + -1.7 359,064 + +1.2 359,064 + +0.5 359,064 + +2.3 359,064 + -3.5 359,065 - -1.4 359,065 - -1.6 359,065 - +1.7 359,065 - -0.0 359,065 - +2.9 359,065 - -0.9 359,065 - +0.7 359,065 - +0.9 359,065 - -0.5 359,065 - -0.1 359,065 - -0.8 359,065 - -0.5 359,065 - +2.9 359,065 - -2.2 359,065 - -2.2 359,065 - -1.2 359,065 - -1.5 359,065 - +3.0 359,065 - -0.9 359,065 - +1.3 359,118 + +1.0 359,146 + -0.2 359,147 - +1.8 359,147 - +0.6 359,147 - +3.1 359,158 + +2.8 359,158 + -0.6 359,158 + -1.0 359,158 + +0.5 359,158 + -1.2 359,158 + -1.6 359,158 + +1.9 359,158 + -3.1 359,159 - -0.0 359,159 - +0.8 359,159 - -1.2 359,159 - -0.6 359,159 - -0.6 359,159 - +0.7 359,159 - -2.4 359,159 - +0.8 359,159 - -2.8 359,176 + +1.0 359,176 + +1.1 359,176 + +2.6 359,176 + -0.4 359,176 + +0.6 359,176 + +0.8 359,176 + +1.4 359,176 + -2.3 359,177 - +2.0 359,177 - -0.7 359,177 - +1.4 359,177 - +0.9 359,191 + +0.1 359,192 - +3.1 359,659 + Psyr_0337 0.39 -0.7 359,659 + Psyr_0337 0.39 -1.7 359,660 - Psyr_0337 0.39 -2.0 359,680 + Psyr_0337 0.41 +2.4 359,680 + Psyr_0337 0.41 -0.9 359,680 + Psyr_0337 0.41 -0.0 359,680 + Psyr_0337 0.41 -2.9 359,680 + Psyr_0337 0.41 +0.1 359,681 - Psyr_0337 0.41 -1.6 359,681 - Psyr_0337 0.41 +1.1 359,681 - Psyr_0337 0.41 -1.2 359,681 - Psyr_0337 0.41 +3.8 359,681 - Psyr_0337 0.41 -1.3 359,714 - Psyr_0337 0.45 -1.2 359,833 + Psyr_0337 0.58 -1.2 359,833 + Psyr_0337 0.58 -0.8 359,834 - Psyr_0337 0.58 +2.0 359,834 - Psyr_0337 0.58 +0.7 359,845 + Psyr_0337 0.60 -0.8 359,909 + Psyr_0337 0.67 +2.8 359,910 - Psyr_0337 0.67 -1.0 359,910 - Psyr_0337 0.67 +0.2 359,910 - Psyr_0337 0.67 -0.4 359,910 - Psyr_0337 0.67 -2.6
Or see this region's nucleotide sequence