Experiment: apoplastic, sonication recovery; Green bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0166 and Psyr_0167 are separated by 5 nucleotides Psyr_0167 and Psyr_0168 are separated by 370 nucleotides Psyr_0168 and Psyr_0169 are separated by 179 nucleotides
Psyr_0166: Psyr_0166 - hypothetical protein, at 180,107 to 181,417
_0166
Psyr_0167: Psyr_0167 - hypothetical protein, at 181,423 to 181,845
_0167
Psyr_0168: Psyr_0168 - Phosphoenolpyruvate carboxykinase (ATP), at 182,216 to 183,760
_0168
Psyr_0169: Psyr_0169 - Hsp33 protein, at 183,940 to 184,842
_0169
Position (kb) 182
183
184 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 181.274 kb on + strand, within Psyr_0166 at 181.286 kb on + strand, within Psyr_0166 at 181.287 kb on - strand at 181.288 kb on + strand at 181.289 kb on - strand at 181.328 kb on - strand at 181.387 kb on + strand at 181.611 kb on + strand, within Psyr_0167 at 181.693 kb on + strand, within Psyr_0167 at 181.693 kb on + strand, within Psyr_0167 at 181.693 kb on + strand, within Psyr_0167 at 181.693 kb on + strand, within Psyr_0167 at 181.694 kb on - strand, within Psyr_0167 at 181.694 kb on - strand, within Psyr_0167 at 181.696 kb on - strand, within Psyr_0167 at 181.798 kb on - strand, within Psyr_0167 at 181.843 kb on + strand at 181.847 kb on + strand at 181.847 kb on + strand at 181.847 kb on + strand at 181.848 kb on - strand at 181.848 kb on - strand at 181.904 kb on + strand at 181.904 kb on + strand at 181.904 kb on + strand at 181.905 kb on - strand at 182.034 kb on - strand at 182.054 kb on - strand at 182.084 kb on + strand at 182.086 kb on + strand at 182.087 kb on - strand at 182.087 kb on - strand at 182.104 kb on - strand at 182.128 kb on - strand at 182.207 kb on + strand at 182.207 kb on + strand at 182.208 kb on - strand at 182.217 kb on + strand at 182.218 kb on - strand at 182.218 kb on - strand at 182.313 kb on + strand at 182.314 kb on - strand at 182.532 kb on + strand, within Psyr_0168 at 182.532 kb on + strand, within Psyr_0168 at 182.532 kb on + strand, within Psyr_0168 at 182.532 kb on + strand, within Psyr_0168 at 182.532 kb on + strand, within Psyr_0168 at 182.533 kb on - strand, within Psyr_0168 at 182.533 kb on - strand, within Psyr_0168 at 182.744 kb on + strand, within Psyr_0168 at 182.835 kb on + strand, within Psyr_0168 at 182.918 kb on + strand, within Psyr_0168 at 182.989 kb on - strand, within Psyr_0168 at 183.116 kb on + strand, within Psyr_0168 at 183.116 kb on + strand, within Psyr_0168 at 183.117 kb on - strand, within Psyr_0168 at 183.117 kb on - strand, within Psyr_0168 at 183.117 kb on - strand, within Psyr_0168 at 183.117 kb on - strand, within Psyr_0168 at 183.272 kb on + strand, within Psyr_0168 at 183.272 kb on + strand, within Psyr_0168 at 183.273 kb on - strand, within Psyr_0168 at 183.366 kb on + strand, within Psyr_0168 at 183.366 kb on + strand, within Psyr_0168 at 183.366 kb on + strand, within Psyr_0168 at 183.366 kb on + strand, within Psyr_0168 at 183.366 kb on + strand, within Psyr_0168 at 183.366 kb on + strand, within Psyr_0168 at 183.366 kb on + strand, within Psyr_0168 at 183.367 kb on - strand, within Psyr_0168 at 183.367 kb on - strand, within Psyr_0168 at 183.367 kb on - strand, within Psyr_0168 at 183.367 kb on - strand, within Psyr_0168 at 183.464 kb on + strand, within Psyr_0168 at 183.464 kb on + strand, within Psyr_0168 at 183.464 kb on + strand, within Psyr_0168 at 183.464 kb on + strand, within Psyr_0168 at 183.465 kb on - strand, within Psyr_0168 at 183.465 kb on - strand, within Psyr_0168 at 183.465 kb on - strand, within Psyr_0168 at 183.465 kb on - strand, within Psyr_0168 at 183.465 kb on - strand, within Psyr_0168 at 183.634 kb on + strand at 183.635 kb on - strand at 183.677 kb on + strand at 183.678 kb on - strand at 183.735 kb on + strand at 183.735 kb on + strand at 183.735 kb on + strand at 183.735 kb on + strand at 183.736 kb on - strand at 183.736 kb on - strand at 183.736 kb on - strand at 183.736 kb on - strand at 183.827 kb on - strand at 183.833 kb on + strand at 183.834 kb on - strand at 183.898 kb on + strand at 183.898 kb on + strand at 183.898 kb on + strand at 183.899 kb on - strand at 183.899 kb on - strand at 184.017 kb on - strand at 184.403 kb on + strand, within Psyr_0169 at 184.403 kb on + strand, within Psyr_0169 at 184.403 kb on + strand, within Psyr_0169 at 184.403 kb on + strand, within Psyr_0169 at 184.404 kb on - strand, within Psyr_0169 at 184.404 kb on - strand, within Psyr_0169 at 184.404 kb on - strand, within Psyr_0169 at 184.404 kb on - strand, within Psyr_0169 at 184.751 kb on + strand, within Psyr_0169 at 184.752 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic, sonication recovery; Green bean remove 181,274 + Psyr_0166 0.89 -2.0 181,286 + Psyr_0166 0.90 -1.2 181,287 - +2.2 181,288 + -1.5 181,289 - -0.5 181,328 - -3.1 181,387 + -1.1 181,611 + Psyr_0167 0.44 -1.1 181,693 + Psyr_0167 0.64 -1.7 181,693 + Psyr_0167 0.64 -3.0 181,693 + Psyr_0167 0.64 -2.2 181,693 + Psyr_0167 0.64 -0.0 181,694 - Psyr_0167 0.64 -2.6 181,694 - Psyr_0167 0.64 -0.4 181,696 - Psyr_0167 0.65 -1.8 181,798 - Psyr_0167 0.89 -3.4 181,843 + -0.9 181,847 + +0.6 181,847 + +0.4 181,847 + -1.1 181,848 - -0.5 181,848 - -1.1 181,904 + -0.3 181,904 + -2.0 181,904 + -0.7 181,905 - +1.8 182,034 - -1.3 182,054 - +2.2 182,084 + +1.5 182,086 + +1.0 182,087 - -1.7 182,087 - -0.4 182,104 - +3.3 182,128 - -1.3 182,207 + -1.5 182,207 + +4.1 182,208 - -0.4 182,217 + +0.1 182,218 - +0.8 182,218 - +1.0 182,313 + +1.4 182,314 - -1.3 182,532 + Psyr_0168 0.20 -1.1 182,532 + Psyr_0168 0.20 +1.7 182,532 + Psyr_0168 0.20 -1.3 182,532 + Psyr_0168 0.20 +1.0 182,532 + Psyr_0168 0.20 +1.8 182,533 - Psyr_0168 0.21 +2.6 182,533 - Psyr_0168 0.21 +0.6 182,744 + Psyr_0168 0.34 -2.1 182,835 + Psyr_0168 0.40 -1.7 182,918 + Psyr_0168 0.45 +2.2 182,989 - Psyr_0168 0.50 -2.1 183,116 + Psyr_0168 0.58 +0.1 183,116 + Psyr_0168 0.58 +2.0 183,117 - Psyr_0168 0.58 -0.9 183,117 - Psyr_0168 0.58 -2.7 183,117 - Psyr_0168 0.58 -1.3 183,117 - Psyr_0168 0.58 -1.7 183,272 + Psyr_0168 0.68 -2.9 183,272 + Psyr_0168 0.68 -2.4 183,273 - Psyr_0168 0.68 +0.3 183,366 + Psyr_0168 0.74 +1.2 183,366 + Psyr_0168 0.74 -0.2 183,366 + Psyr_0168 0.74 -1.6 183,366 + Psyr_0168 0.74 -3.2 183,366 + Psyr_0168 0.74 +1.5 183,366 + Psyr_0168 0.74 -1.1 183,366 + Psyr_0168 0.74 -1.8 183,367 - Psyr_0168 0.74 +0.6 183,367 - Psyr_0168 0.74 -2.0 183,367 - Psyr_0168 0.74 -1.6 183,367 - Psyr_0168 0.74 -1.4 183,464 + Psyr_0168 0.81 +1.1 183,464 + Psyr_0168 0.81 +1.9 183,464 + Psyr_0168 0.81 -1.6 183,464 + Psyr_0168 0.81 -0.5 183,465 - Psyr_0168 0.81 +2.6 183,465 - Psyr_0168 0.81 +1.9 183,465 - Psyr_0168 0.81 -1.0 183,465 - Psyr_0168 0.81 +1.6 183,465 - Psyr_0168 0.81 -0.4 183,634 + -1.7 183,635 - +2.5 183,677 + -2.5 183,678 - +2.1 183,735 + -0.7 183,735 + -1.4 183,735 + -0.9 183,735 + -2.8 183,736 - +0.9 183,736 - -1.1 183,736 - -2.6 183,736 - -0.7 183,827 - +0.8 183,833 + +0.3 183,834 - -0.6 183,898 + -0.7 183,898 + -2.3 183,898 + -1.7 183,899 - -0.1 183,899 - -0.0 184,017 - -1.5 184,403 + Psyr_0169 0.51 -1.8 184,403 + Psyr_0169 0.51 +1.2 184,403 + Psyr_0169 0.51 -0.6 184,403 + Psyr_0169 0.51 -2.2 184,404 - Psyr_0169 0.51 -0.4 184,404 - Psyr_0169 0.51 +0.2 184,404 - Psyr_0169 0.51 -2.7 184,404 - Psyr_0169 0.51 +0.8 184,751 + Psyr_0169 0.90 -2.4 184,752 - -0.6
Or see this region's nucleotide sequence