Experiment: apoplastic, sonication recovery; Green bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0136 and Psyr_0137 overlap by 1 nucleotides Psyr_0137 and Psyr_0138 are separated by 210 nucleotides Psyr_0138 and Psyr_0139 are separated by 144 nucleotides
Psyr_0136: Psyr_0136 - outer membrane transport energization protein ExbB, at 145,279 to 145,986
_0136
Psyr_0137: Psyr_0137 - outer membrane transport energization protein ExbD, at 145,986 to 146,387
_0137
Psyr_0138: Psyr_0138 - TonB-dependent receptor:TonB-dependent receptor, at 146,598 to 149,312
_0138
Psyr_0139: Psyr_0139 - extracellular solute-binding protein, family 5, at 149,457 to 151,340
_0139
Position (kb) 146
147
148
149
150 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 145.607 kb on + strand, within Psyr_0136 at 145.607 kb on + strand, within Psyr_0136 at 145.608 kb on - strand, within Psyr_0136 at 145.834 kb on + strand, within Psyr_0136 at 145.834 kb on + strand, within Psyr_0136 at 145.835 kb on - strand, within Psyr_0136 at 145.835 kb on - strand, within Psyr_0136 at 145.835 kb on - strand, within Psyr_0136 at 145.984 kb on + strand at 145.984 kb on + strand at 145.985 kb on - strand at 146.199 kb on + strand, within Psyr_0137 at 146.199 kb on + strand, within Psyr_0137 at 146.366 kb on - strand at 146.587 kb on + strand at 146.788 kb on + strand at 146.788 kb on + strand at 146.788 kb on + strand at 146.788 kb on + strand at 147.156 kb on + strand, within Psyr_0138 at 147.156 kb on + strand, within Psyr_0138 at 147.157 kb on - strand, within Psyr_0138 at 147.186 kb on - strand, within Psyr_0138 at 147.186 kb on - strand, within Psyr_0138 at 147.186 kb on - strand, within Psyr_0138 at 147.320 kb on + strand, within Psyr_0138 at 147.342 kb on + strand, within Psyr_0138 at 147.342 kb on + strand, within Psyr_0138 at 147.342 kb on + strand, within Psyr_0138 at 147.342 kb on + strand, within Psyr_0138 at 147.342 kb on + strand, within Psyr_0138 at 147.343 kb on - strand, within Psyr_0138 at 147.343 kb on - strand, within Psyr_0138 at 147.343 kb on - strand, within Psyr_0138 at 147.393 kb on + strand, within Psyr_0138 at 147.393 kb on + strand, within Psyr_0138 at 147.393 kb on + strand, within Psyr_0138 at 147.393 kb on + strand, within Psyr_0138 at 147.394 kb on - strand, within Psyr_0138 at 147.394 kb on - strand, within Psyr_0138 at 147.394 kb on - strand, within Psyr_0138 at 147.394 kb on - strand, within Psyr_0138 at 147.394 kb on - strand, within Psyr_0138 at 147.394 kb on - strand, within Psyr_0138 at 147.394 kb on - strand, within Psyr_0138 at 147.500 kb on + strand, within Psyr_0138 at 147.500 kb on + strand, within Psyr_0138 at 147.546 kb on + strand, within Psyr_0138 at 147.546 kb on + strand, within Psyr_0138 at 147.546 kb on + strand, within Psyr_0138 at 147.547 kb on - strand, within Psyr_0138 at 147.547 kb on - strand, within Psyr_0138 at 147.636 kb on + strand, within Psyr_0138 at 147.636 kb on + strand, within Psyr_0138 at 147.636 kb on + strand, within Psyr_0138 at 147.637 kb on - strand, within Psyr_0138 at 147.637 kb on - strand, within Psyr_0138 at 147.720 kb on + strand, within Psyr_0138 at 147.720 kb on + strand, within Psyr_0138 at 147.721 kb on - strand, within Psyr_0138 at 147.721 kb on - strand, within Psyr_0138 at 147.734 kb on + strand, within Psyr_0138 at 147.836 kb on + strand, within Psyr_0138 at 147.837 kb on - strand, within Psyr_0138 at 147.888 kb on + strand, within Psyr_0138 at 147.888 kb on + strand, within Psyr_0138 at 147.888 kb on + strand, within Psyr_0138 at 147.889 kb on - strand, within Psyr_0138 at 147.889 kb on - strand, within Psyr_0138 at 147.889 kb on - strand, within Psyr_0138 at 147.906 kb on + strand, within Psyr_0138 at 147.906 kb on + strand, within Psyr_0138 at 147.906 kb on + strand, within Psyr_0138 at 147.907 kb on - strand, within Psyr_0138 at 147.907 kb on - strand, within Psyr_0138 at 147.907 kb on - strand, within Psyr_0138 at 147.907 kb on - strand, within Psyr_0138 at 147.907 kb on - strand, within Psyr_0138 at 147.945 kb on + strand, within Psyr_0138 at 147.945 kb on + strand, within Psyr_0138 at 147.945 kb on + strand, within Psyr_0138 at 147.946 kb on - strand, within Psyr_0138 at 147.946 kb on - strand, within Psyr_0138 at 147.947 kb on + strand, within Psyr_0138 at 147.947 kb on + strand, within Psyr_0138 at 147.947 kb on + strand, within Psyr_0138 at 147.947 kb on + strand, within Psyr_0138 at 147.947 kb on + strand, within Psyr_0138 at 147.947 kb on + strand, within Psyr_0138 at 147.947 kb on + strand, within Psyr_0138 at 147.948 kb on - strand, within Psyr_0138 at 147.948 kb on - strand, within Psyr_0138 at 147.968 kb on + strand, within Psyr_0138 at 148.048 kb on - strand, within Psyr_0138 at 148.059 kb on + strand, within Psyr_0138 at 148.153 kb on + strand, within Psyr_0138 at 148.191 kb on + strand, within Psyr_0138 at 148.275 kb on + strand, within Psyr_0138 at 148.341 kb on + strand, within Psyr_0138 at 148.341 kb on + strand, within Psyr_0138 at 148.341 kb on + strand, within Psyr_0138 at 148.341 kb on + strand, within Psyr_0138 at 148.341 kb on + strand, within Psyr_0138 at 148.342 kb on - strand, within Psyr_0138 at 148.374 kb on + strand, within Psyr_0138 at 148.422 kb on + strand, within Psyr_0138 at 148.422 kb on + strand, within Psyr_0138 at 148.423 kb on - strand, within Psyr_0138 at 148.452 kb on + strand, within Psyr_0138 at 148.461 kb on + strand, within Psyr_0138 at 148.461 kb on + strand, within Psyr_0138 at 148.462 kb on - strand, within Psyr_0138 at 148.473 kb on - strand, within Psyr_0138 at 148.494 kb on + strand, within Psyr_0138 at 148.494 kb on + strand, within Psyr_0138 at 148.495 kb on - strand, within Psyr_0138 at 148.497 kb on + strand, within Psyr_0138 at 148.497 kb on + strand, within Psyr_0138 at 148.497 kb on + strand, within Psyr_0138 at 148.497 kb on + strand, within Psyr_0138 at 148.497 kb on + strand, within Psyr_0138 at 148.497 kb on + strand, within Psyr_0138 at 148.497 kb on + strand, within Psyr_0138 at 148.497 kb on + strand, within Psyr_0138 at 148.497 kb on + strand, within Psyr_0138 at 148.498 kb on - strand, within Psyr_0138 at 148.498 kb on - strand, within Psyr_0138 at 148.498 kb on - strand, within Psyr_0138 at 148.498 kb on - strand, within Psyr_0138 at 148.498 kb on - strand, within Psyr_0138 at 148.498 kb on - strand, within Psyr_0138 at 148.498 kb on - strand, within Psyr_0138 at 148.498 kb on - strand, within Psyr_0138 at 148.645 kb on - strand, within Psyr_0138 at 148.748 kb on + strand, within Psyr_0138 at 148.749 kb on - strand, within Psyr_0138 at 148.752 kb on + strand, within Psyr_0138 at 148.752 kb on + strand, within Psyr_0138 at 148.753 kb on - strand, within Psyr_0138 at 148.765 kb on - strand, within Psyr_0138 at 148.882 kb on - strand, within Psyr_0138 at 148.914 kb on + strand, within Psyr_0138 at 148.914 kb on + strand, within Psyr_0138 at 148.914 kb on + strand, within Psyr_0138 at 148.914 kb on + strand, within Psyr_0138 at 148.914 kb on + strand, within Psyr_0138 at 148.914 kb on + strand, within Psyr_0138 at 148.914 kb on + strand, within Psyr_0138 at 148.915 kb on - strand, within Psyr_0138 at 148.915 kb on - strand, within Psyr_0138 at 148.915 kb on - strand, within Psyr_0138 at 148.915 kb on - strand, within Psyr_0138 at 148.915 kb on - strand, within Psyr_0138 at 148.915 kb on - strand, within Psyr_0138 at 148.915 kb on - strand, within Psyr_0138 at 148.915 kb on - strand, within Psyr_0138 at 148.956 kb on + strand, within Psyr_0138 at 148.957 kb on - strand, within Psyr_0138 at 148.957 kb on - strand, within Psyr_0138 at 149.079 kb on + strand at 149.080 kb on - strand at 149.088 kb on + strand at 149.121 kb on + strand at 149.150 kb on + strand at 149.150 kb on + strand at 149.150 kb on + strand at 149.150 kb on + strand at 149.151 kb on - strand at 149.151 kb on - strand at 149.151 kb on - strand at 149.151 kb on - strand at 149.192 kb on + strand at 149.192 kb on + strand at 149.192 kb on + strand at 149.192 kb on + strand at 149.192 kb on + strand at 149.192 kb on + strand at 149.192 kb on + strand at 149.192 kb on + strand at 149.192 kb on + strand at 149.192 kb on + strand at 149.192 kb on + strand at 149.192 kb on + strand at 149.192 kb on + strand at 149.193 kb on - strand at 149.193 kb on - strand at 149.193 kb on - strand at 149.193 kb on - strand at 149.193 kb on - strand at 149.193 kb on - strand at 149.193 kb on - strand at 149.193 kb on - strand at 149.229 kb on + strand at 149.229 kb on + strand at 149.229 kb on + strand at 149.229 kb on + strand at 149.230 kb on - strand at 149.230 kb on - strand at 149.301 kb on + strand at 149.301 kb on + strand at 149.301 kb on + strand at 149.302 kb on - strand at 149.302 kb on - strand at 149.302 kb on - strand at 149.332 kb on - strand at 149.332 kb on - strand at 149.439 kb on + strand at 149.440 kb on - strand at 149.559 kb on + strand at 149.559 kb on + strand at 149.560 kb on - strand at 149.560 kb on - strand at 149.604 kb on + strand at 149.673 kb on + strand, within Psyr_0139 at 149.674 kb on - strand, within Psyr_0139 at 149.730 kb on + strand, within Psyr_0139 at 149.766 kb on + strand, within Psyr_0139 at 149.766 kb on + strand, within Psyr_0139 at 149.775 kb on + strand, within Psyr_0139 at 149.776 kb on - strand, within Psyr_0139 at 149.776 kb on - strand, within Psyr_0139 at 149.776 kb on - strand, within Psyr_0139 at 149.776 kb on - strand, within Psyr_0139 at 149.893 kb on - strand, within Psyr_0139 at 149.931 kb on + strand, within Psyr_0139 at 150.219 kb on + strand, within Psyr_0139 at 150.220 kb on - strand, within Psyr_0139 at 150.220 kb on - strand, within Psyr_0139 at 150.220 kb on - strand, within Psyr_0139 at 150.220 kb on - strand, within Psyr_0139 at 150.220 kb on - strand, within Psyr_0139 at 150.237 kb on - strand, within Psyr_0139 at 150.246 kb on + strand, within Psyr_0139 at 150.246 kb on + strand, within Psyr_0139 at 150.246 kb on + strand, within Psyr_0139 at 150.246 kb on + strand, within Psyr_0139 at 150.246 kb on + strand, within Psyr_0139 at 150.247 kb on - strand, within Psyr_0139 at 150.247 kb on - strand, within Psyr_0139 at 150.247 kb on - strand, within Psyr_0139 at 150.247 kb on - strand, within Psyr_0139 at 150.247 kb on - strand, within Psyr_0139 at 150.247 kb on - strand, within Psyr_0139 at 150.247 kb on - strand, within Psyr_0139 at 150.249 kb on + strand, within Psyr_0139 at 150.300 kb on + strand, within Psyr_0139 at 150.300 kb on + strand, within Psyr_0139 at 150.301 kb on - strand, within Psyr_0139 at 150.301 kb on - strand, within Psyr_0139
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic, sonication recovery; Green bean remove 145,607 + Psyr_0136 0.46 -1.7 145,607 + Psyr_0136 0.46 +2.3 145,608 - Psyr_0136 0.46 -0.4 145,834 + Psyr_0136 0.78 -1.7 145,834 + Psyr_0136 0.78 +0.7 145,835 - Psyr_0136 0.79 -1.9 145,835 - Psyr_0136 0.79 +1.0 145,835 - Psyr_0136 0.79 +1.7 145,984 + -0.8 145,984 + +3.1 145,985 - +1.9 146,199 + Psyr_0137 0.53 -2.8 146,199 + Psyr_0137 0.53 +2.6 146,366 - -0.4 146,587 + -2.1 146,788 + -1.0 146,788 + +0.0 146,788 + -3.4 146,788 + -0.7 147,156 + Psyr_0138 0.21 +0.6 147,156 + Psyr_0138 0.21 -0.6 147,157 - Psyr_0138 0.21 +1.3 147,186 - Psyr_0138 0.22 -3.0 147,186 - Psyr_0138 0.22 +2.5 147,186 - Psyr_0138 0.22 +2.6 147,320 + Psyr_0138 0.27 +4.4 147,342 + Psyr_0138 0.27 -0.6 147,342 + Psyr_0138 0.27 -1.6 147,342 + Psyr_0138 0.27 -2.0 147,342 + Psyr_0138 0.27 +0.5 147,342 + Psyr_0138 0.27 -0.3 147,343 - Psyr_0138 0.27 -0.9 147,343 - Psyr_0138 0.27 -2.3 147,343 - Psyr_0138 0.27 -2.1 147,393 + Psyr_0138 0.29 +1.3 147,393 + Psyr_0138 0.29 -1.1 147,393 + Psyr_0138 0.29 +0.2 147,393 + Psyr_0138 0.29 -0.6 147,394 - Psyr_0138 0.29 -1.2 147,394 - Psyr_0138 0.29 -1.9 147,394 - Psyr_0138 0.29 +1.5 147,394 - Psyr_0138 0.29 +1.9 147,394 - Psyr_0138 0.29 +1.2 147,394 - Psyr_0138 0.29 +1.7 147,394 - Psyr_0138 0.29 +4.4 147,500 + Psyr_0138 0.33 -0.8 147,500 + Psyr_0138 0.33 -0.1 147,546 + Psyr_0138 0.35 +0.7 147,546 + Psyr_0138 0.35 -1.6 147,546 + Psyr_0138 0.35 -2.8 147,547 - Psyr_0138 0.35 +0.1 147,547 - Psyr_0138 0.35 +2.4 147,636 + Psyr_0138 0.38 +2.3 147,636 + Psyr_0138 0.38 -1.1 147,636 + Psyr_0138 0.38 +2.0 147,637 - Psyr_0138 0.38 -1.7 147,637 - Psyr_0138 0.38 -1.4 147,720 + Psyr_0138 0.41 +0.3 147,720 + Psyr_0138 0.41 -2.6 147,721 - Psyr_0138 0.41 -2.8 147,721 - Psyr_0138 0.41 +1.7 147,734 + Psyr_0138 0.42 +1.7 147,836 + Psyr_0138 0.46 +1.9 147,837 - Psyr_0138 0.46 -0.1 147,888 + Psyr_0138 0.48 +0.3 147,888 + Psyr_0138 0.48 -3.3 147,888 + Psyr_0138 0.48 +2.1 147,889 - Psyr_0138 0.48 -2.6 147,889 - Psyr_0138 0.48 -2.3 147,889 - Psyr_0138 0.48 -0.8 147,906 + Psyr_0138 0.48 +1.3 147,906 + Psyr_0138 0.48 -2.9 147,906 + Psyr_0138 0.48 -1.2 147,907 - Psyr_0138 0.48 +0.3 147,907 - Psyr_0138 0.48 +3.2 147,907 - Psyr_0138 0.48 +2.5 147,907 - Psyr_0138 0.48 -2.4 147,907 - Psyr_0138 0.48 +0.4 147,945 + Psyr_0138 0.50 +0.0 147,945 + Psyr_0138 0.50 -0.4 147,945 + Psyr_0138 0.50 -2.9 147,946 - Psyr_0138 0.50 -0.1 147,946 - Psyr_0138 0.50 -0.2 147,947 + Psyr_0138 0.50 -1.9 147,947 + Psyr_0138 0.50 +0.8 147,947 + Psyr_0138 0.50 +1.5 147,947 + Psyr_0138 0.50 +4.3 147,947 + Psyr_0138 0.50 +0.8 147,947 + Psyr_0138 0.50 +0.3 147,947 + Psyr_0138 0.50 +3.5 147,948 - Psyr_0138 0.50 -2.6 147,948 - Psyr_0138 0.50 -1.6 147,968 + Psyr_0138 0.50 -0.9 148,048 - Psyr_0138 0.53 +1.3 148,059 + Psyr_0138 0.54 -1.9 148,153 + Psyr_0138 0.57 +3.3 148,191 + Psyr_0138 0.59 -1.1 148,275 + Psyr_0138 0.62 -3.4 148,341 + Psyr_0138 0.64 +2.8 148,341 + Psyr_0138 0.64 +1.0 148,341 + Psyr_0138 0.64 +0.1 148,341 + Psyr_0138 0.64 +0.5 148,341 + Psyr_0138 0.64 -2.1 148,342 - Psyr_0138 0.64 -0.6 148,374 + Psyr_0138 0.65 -2.0 148,422 + Psyr_0138 0.67 -1.6 148,422 + Psyr_0138 0.67 +0.5 148,423 - Psyr_0138 0.67 -1.7 148,452 + Psyr_0138 0.68 +2.4 148,461 + Psyr_0138 0.69 +2.9 148,461 + Psyr_0138 0.69 +0.1 148,462 - Psyr_0138 0.69 +1.2 148,473 - Psyr_0138 0.69 -1.8 148,494 + Psyr_0138 0.70 -0.6 148,494 + Psyr_0138 0.70 +2.0 148,495 - Psyr_0138 0.70 +2.7 148,497 + Psyr_0138 0.70 +0.9 148,497 + Psyr_0138 0.70 +0.4 148,497 + Psyr_0138 0.70 +0.6 148,497 + Psyr_0138 0.70 +0.6 148,497 + Psyr_0138 0.70 +1.8 148,497 + Psyr_0138 0.70 -1.7 148,497 + Psyr_0138 0.70 -1.1 148,497 + Psyr_0138 0.70 +2.2 148,497 + Psyr_0138 0.70 +1.4 148,498 - Psyr_0138 0.70 +1.8 148,498 - Psyr_0138 0.70 +0.3 148,498 - Psyr_0138 0.70 +2.5 148,498 - Psyr_0138 0.70 +2.7 148,498 - Psyr_0138 0.70 +0.5 148,498 - Psyr_0138 0.70 -0.6 148,498 - Psyr_0138 0.70 -0.8 148,498 - Psyr_0138 0.70 -0.7 148,645 - Psyr_0138 0.75 -0.1 148,748 + Psyr_0138 0.79 -2.5 148,749 - Psyr_0138 0.79 +3.4 148,752 + Psyr_0138 0.79 -0.4 148,752 + Psyr_0138 0.79 +1.0 148,753 - Psyr_0138 0.79 -1.9 148,765 - Psyr_0138 0.80 -0.7 148,882 - Psyr_0138 0.84 +0.2 148,914 + Psyr_0138 0.85 +2.2 148,914 + Psyr_0138 0.85 +2.6 148,914 + Psyr_0138 0.85 -2.8 148,914 + Psyr_0138 0.85 +0.3 148,914 + Psyr_0138 0.85 +0.2 148,914 + Psyr_0138 0.85 -2.7 148,914 + Psyr_0138 0.85 -2.1 148,915 - Psyr_0138 0.85 +1.1 148,915 - Psyr_0138 0.85 +1.2 148,915 - Psyr_0138 0.85 -1.8 148,915 - Psyr_0138 0.85 +0.1 148,915 - Psyr_0138 0.85 +0.3 148,915 - Psyr_0138 0.85 -3.2 148,915 - Psyr_0138 0.85 -1.8 148,915 - Psyr_0138 0.85 -1.9 148,956 + Psyr_0138 0.87 +0.9 148,957 - Psyr_0138 0.87 -1.9 148,957 - Psyr_0138 0.87 +1.1 149,079 + +1.9 149,080 - +0.8 149,088 + +1.0 149,121 + +0.6 149,150 + +0.9 149,150 + +1.4 149,150 + -0.1 149,150 + +1.9 149,151 - +0.3 149,151 - +0.6 149,151 - +1.3 149,151 - -0.0 149,192 + +0.4 149,192 + -1.2 149,192 + -0.8 149,192 + -0.4 149,192 + -3.0 149,192 + -2.0 149,192 + -3.5 149,192 + +1.6 149,192 + +1.6 149,192 + +1.0 149,192 + +3.8 149,192 + +1.3 149,192 + -0.3 149,193 - +0.5 149,193 - -0.9 149,193 - -0.4 149,193 - +3.3 149,193 - -0.6 149,193 - +1.0 149,193 - +1.1 149,193 - -0.4 149,229 + +0.9 149,229 + +1.0 149,229 + +2.0 149,229 + +1.7 149,230 - -0.4 149,230 - +0.4 149,301 + +0.3 149,301 + +2.8 149,301 + -1.2 149,302 - +1.4 149,302 - +1.1 149,302 - -0.9 149,332 - -0.9 149,332 - -0.8 149,439 + -2.4 149,440 - -1.3 149,559 + -0.2 149,559 + -1.1 149,560 - -0.6 149,560 - +0.5 149,604 + -2.0 149,673 + Psyr_0139 0.11 +3.6 149,674 - Psyr_0139 0.12 -0.7 149,730 + Psyr_0139 0.14 -0.0 149,766 + Psyr_0139 0.16 -2.1 149,766 + Psyr_0139 0.16 +1.4 149,775 + Psyr_0139 0.17 -3.1 149,776 - Psyr_0139 0.17 -0.8 149,776 - Psyr_0139 0.17 -0.8 149,776 - Psyr_0139 0.17 +0.2 149,776 - Psyr_0139 0.17 +1.2 149,893 - Psyr_0139 0.23 -0.9 149,931 + Psyr_0139 0.25 +0.0 150,219 + Psyr_0139 0.40 -1.7 150,220 - Psyr_0139 0.40 +1.6 150,220 - Psyr_0139 0.40 +1.0 150,220 - Psyr_0139 0.40 -1.8 150,220 - Psyr_0139 0.40 -0.1 150,220 - Psyr_0139 0.40 -2.3 150,237 - Psyr_0139 0.41 -1.4 150,246 + Psyr_0139 0.42 -0.7 150,246 + Psyr_0139 0.42 +0.2 150,246 + Psyr_0139 0.42 +0.2 150,246 + Psyr_0139 0.42 +2.3 150,246 + Psyr_0139 0.42 -0.4 150,247 - Psyr_0139 0.42 -0.5 150,247 - Psyr_0139 0.42 -1.1 150,247 - Psyr_0139 0.42 +2.4 150,247 - Psyr_0139 0.42 +1.9 150,247 - Psyr_0139 0.42 +1.0 150,247 - Psyr_0139 0.42 -2.9 150,247 - Psyr_0139 0.42 +0.2 150,249 + Psyr_0139 0.42 +1.0 150,300 + Psyr_0139 0.45 +1.5 150,300 + Psyr_0139 0.45 -3.1 150,301 - Psyr_0139 0.45 -0.9 150,301 - Psyr_0139 0.45 -0.1
Or see this region's nucleotide sequence