Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS05805

Experiment: R2A with Other_metal_mix 1 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Other_metal_mix 1 X
1,251,971	+				-0.3
1,251,971	+				-0.2
1,251,971	+				-0.9
1,251,971	+				+0.3
1,251,971	+				-0.5
1,251,972	-				+0.9
1,251,972	-				-0.2
1,251,972	-				-0.1
1,251,972	-				+0.0
1,251,972	-				-0.1
1,251,972	-				-1.1
1,252,150	-		LRK54_RS05795	0.48	-1.1
1,252,207	+		LRK54_RS05795	0.60	+0.3
1,252,207	+		LRK54_RS05795	0.60	-0.7
1,252,207	+		LRK54_RS05795	0.60	-0.6
1,252,207	+		LRK54_RS05795	0.60	+0.1
1,252,207	+		LRK54_RS05795	0.60	-2.2
1,252,207	+		LRK54_RS05795	0.60	-0.3
1,252,207	+		LRK54_RS05795	0.60	-0.2
1,252,207	+		LRK54_RS05795	0.60	-1.2
1,252,208	-		LRK54_RS05795	0.61	-0.6
1,252,208	-		LRK54_RS05795	0.61	-0.6
1,252,208	-		LRK54_RS05795	0.61	+0.6
1,252,208	-		LRK54_RS05795	0.61	+0.7
1,252,208	-		LRK54_RS05795	0.61	+0.3
1,252,208	-		LRK54_RS05795	0.61	+0.3
1,252,208	-		LRK54_RS05795	0.61	-0.1
1,252,208	-		LRK54_RS05795	0.61	+1.3
1,252,208	-		LRK54_RS05795	0.61	+0.2
1,252,242	+		LRK54_RS05795	0.68	+0.7
1,252,242	+		LRK54_RS05795	0.68	-0.1
1,252,242	+		LRK54_RS05795	0.68	-1.6
1,252,242	+		LRK54_RS05795	0.68	+1.2
1,252,242	+		LRK54_RS05795	0.68	+0.1
1,252,242	+		LRK54_RS05795	0.68	+0.0
1,252,242	+		LRK54_RS05795	0.68	+0.2
1,252,243	-		LRK54_RS05795	0.68	-0.1
1,252,243	-		LRK54_RS05795	0.68	-1.3
1,252,243	-		LRK54_RS05795	0.68	+0.7
1,252,243	-		LRK54_RS05795	0.68	-1.6
1,252,243	-		LRK54_RS05795	0.68	-0.2
1,252,243	-		LRK54_RS05795	0.68	-0.1
1,252,243	-		LRK54_RS05795	0.68	-0.6
1,252,315	+		LRK54_RS05795	0.85	+0.7
1,252,315	+		LRK54_RS05795	0.85	+1.1
1,252,315	+		LRK54_RS05795	0.85	-1.0
1,252,315	+		LRK54_RS05795	0.85	+0.4
1,252,315	+		LRK54_RS05795	0.85	-2.3
1,252,315	+		LRK54_RS05795	0.85	+0.3
1,252,315	+		LRK54_RS05795	0.85	+0.8
1,252,315	+		LRK54_RS05795	0.85	+0.3
1,252,315	+		LRK54_RS05795	0.85	+0.8
1,252,315	+		LRK54_RS05795	0.85	+0.9
1,252,315	+		LRK54_RS05795	0.85	-0.4
1,252,315	+		LRK54_RS05795	0.85	+0.8
1,252,316	-		LRK54_RS05795	0.85	+0.1
1,252,316	-		LRK54_RS05795	0.85	+0.6
1,252,316	-		LRK54_RS05795	0.85	-0.7
1,252,316	-		LRK54_RS05795	0.85	+0.2
1,252,316	-		LRK54_RS05795	0.85	-1.5
1,252,316	-		LRK54_RS05795	0.85	+1.2
1,252,316	-		LRK54_RS05795	0.85	+0.7
1,252,316	-		LRK54_RS05795	0.85	+0.4
1,252,316	-		LRK54_RS05795	0.85	-0.3
1,252,316	-		LRK54_RS05795	0.85	-0.0
1,252,316	-		LRK54_RS05795	0.85	-2.7
1,252,316	-		LRK54_RS05795	0.85	-0.3
1,252,316	-		LRK54_RS05795	0.85	-1.6
1,252,316	-		LRK54_RS05795	0.85	-0.3
1,252,316	-		LRK54_RS05795	0.85	+0.0
1,252,321	+		LRK54_RS05795	0.86	-1.7
1,252,321	+		LRK54_RS05795	0.86	-0.5
1,252,321	+		LRK54_RS05795	0.86	+0.0
1,252,321	+		LRK54_RS05795	0.86	-2.4
1,252,321	+		LRK54_RS05795	0.86	-0.1
1,252,321	+		LRK54_RS05795	0.86	+3.9
1,252,321	+		LRK54_RS05795	0.86	-0.2
1,252,321	+		LRK54_RS05795	0.86	-0.0
1,252,321	+		LRK54_RS05795	0.86	-1.3
1,252,321	+		LRK54_RS05795	0.86	+0.3
1,252,321	+		LRK54_RS05795	0.86	+0.6
1,252,321	+		LRK54_RS05795	0.86	+0.0
1,252,321	+		LRK54_RS05795	0.86	+2.2
1,252,322	-		LRK54_RS05795	0.86	+0.0
1,252,322	-		LRK54_RS05795	0.86	-0.1
1,252,322	-		LRK54_RS05795	0.86	-0.7
1,252,322	-		LRK54_RS05795	0.86	+0.1
1,252,322	-		LRK54_RS05795	0.86	-1.5
1,252,322	-		LRK54_RS05795	0.86	-2.9
1,252,322	-		LRK54_RS05795	0.86	+0.7
1,252,322	-		LRK54_RS05795	0.86	+0.3
1,252,322	-		LRK54_RS05795	0.86	-0.4
1,252,322	-		LRK54_RS05795	0.86	+0.0
1,252,322	-		LRK54_RS05795	0.86	-0.4
1,252,322	-		LRK54_RS05795	0.86	+0.2
1,252,322	-		LRK54_RS05795	0.86	-1.0
1,252,322	-		LRK54_RS05795	0.86	+0.9
1,252,322	-		LRK54_RS05795	0.86	+1.0
1,252,322	-		LRK54_RS05795	0.86	-2.1
1,252,322	-		LRK54_RS05795	0.86	+1.3
1,252,381	+				-1.0
1,252,381	+				+0.7
1,252,381	+				+0.4
1,252,381	+				-0.4
1,252,381	+				-0.6
1,252,381	+				+0.3
1,252,381	+				+0.0
1,252,381	+				+0.3
1,252,381	+				+1.9
1,252,381	+				-1.1
1,252,381	+				+0.1
1,252,382	-				-0.4
1,252,382	-				+0.2
1,252,382	-				+1.2
1,252,382	-				+0.4
1,252,382	-				-1.1
1,252,382	-				+0.2
1,252,382	-				+0.6
1,252,382	-				-1.1
1,252,382	-				-0.9
1,252,439	-				-1.7
1,252,541	+		LRK54_RS05800	0.14	-1.1
1,252,542	-		LRK54_RS05800	0.14	-0.3
1,252,542	-		LRK54_RS05800	0.14	+1.0
1,252,542	-		LRK54_RS05800	0.14	+0.9
1,252,664	+		LRK54_RS05800	0.44	-0.6
1,252,664	+		LRK54_RS05800	0.44	-0.7
1,252,664	+		LRK54_RS05800	0.44	+0.1
1,252,664	+		LRK54_RS05800	0.44	+1.1
1,252,665	-		LRK54_RS05800	0.44	-0.1
1,252,665	-		LRK54_RS05800	0.44	-0.7
1,252,796	+		LRK54_RS05800	0.76	-1.0
1,252,797	-		LRK54_RS05800	0.76	+0.6
1,252,797	-		LRK54_RS05800	0.76	-0.0
1,252,841	+		LRK54_RS05800	0.87	+0.6
1,252,842	-		LRK54_RS05800	0.87	-0.2
1,252,892	+				-1.0
1,252,893	-				+0.3
1,252,893	-				-0.1
1,252,933	+				+0.1
1,252,933	+				-3.1
1,252,933	+				-1.2
1,252,933	+				-1.5
1,252,933	+				+0.0
1,252,933	+				-1.1
1,252,934	-				+0.1
1,252,934	-				-0.8
1,252,934	-				-0.1
1,252,934	-				+0.2
1,252,934	-				-0.1
1,252,934	-				-0.3
1,252,934	-				-1.3
1,253,056	+		LRK54_RS05805	0.30	-0.0
1,253,056	+		LRK54_RS05805	0.30	+1.1
1,253,056	+		LRK54_RS05805	0.30	+0.1
1,253,056	+		LRK54_RS05805	0.30	-0.6
1,253,057	-		LRK54_RS05805	0.30	+0.3
1,253,057	-		LRK54_RS05805	0.30	+0.1
1,253,057	-		LRK54_RS05805	0.30	+0.1
1,253,057	-		LRK54_RS05805	0.30	-1.4
1,253,421	+				-1.0
1,253,421	+				-0.3
1,253,421	+				-0.5
1,253,421	+				-2.3
1,253,421	+				-1.7
1,253,421	+				+0.1
1,253,421	+				+0.3
1,253,421	+				+0.8
1,253,421	+				-0.8
1,253,421	+				+1.9
1,253,421	+				-0.1
1,253,421	+				-0.3
1,253,421	+				+0.1
1,253,421	+				-1.0
1,253,421	+				-0.3
1,253,421	+				-2.3
1,253,421	+				-0.4
1,253,421	+				-0.2
1,253,421	+				-2.0
1,253,421	+				-0.5
1,253,421	+				-0.1
1,253,421	+				+0.4
1,253,421	+				-1.7
1,253,422	-				-0.4
1,253,422	-				+0.3
1,253,422	-				-1.1
1,253,422	-				+0.7
1,253,422	-				+2.5
1,253,422	-				-0.7
1,253,422	-				+0.4
1,253,422	-				+1.0
1,253,422	-				+0.1
1,253,422	-				-1.5
1,253,422	-				-2.4
1,253,422	-				+0.3
1,253,422	-				-0.2
1,253,422	-				+1.5
1,253,422	-				+0.2
1,253,433	+				-0.4
1,253,433	+				-0.9
1,253,433	+				-0.2
1,253,433	+				+0.4
1,253,433	+				-0.3
1,253,433	+				+0.5
1,253,433	+				+0.9
1,253,433	+				-2.5
1,253,433	+				-0.1
1,253,433	+				-0.5
1,253,433	+				+1.2
1,253,433	+				-1.6
1,253,433	+				-0.3
1,253,433	+				+0.3
1,253,433	+				+1.3
1,253,434	-				+0.2
1,253,434	-				-0.0
1,253,434	-				-0.8
1,253,434	-				+0.7
1,253,434	-				+1.2
1,253,434	-				-2.3
1,253,434	-				+0.3
1,253,434	-				-0.5
1,253,434	-				-0.0
1,253,434	-				-1.4
1,253,434	-				+1.0
1,253,434	-				+0.2
1,253,434	-				-0.3
1,253,434	-				-1.9
1,253,434	-				+0.0
1,253,434	-				+0.3
1,253,434	-				+0.2
1,253,434	-				+0.4
1,253,434	-				-1.5
1,253,434	-				+0.3
1,253,434	-				-0.6
1,253,434	-				-0.6
1,253,434	-				+0.9
1,253,439	+				-0.2
1,253,439	+				+0.5
1,253,439	+				+0.4
1,253,439	+				+1.0
1,253,439	+				-0.7
1,253,439	+				+0.7
1,253,439	+				+2.3
1,253,439	+				-0.9
1,253,439	+				-1.3
1,253,439	+				-2.3
1,253,439	+				+1.1
1,253,439	+				+0.5
1,253,439	+				+0.2
1,253,439	+				+0.6
1,253,439	+				-0.3
1,253,439	+				-1.6
1,253,439	+				+1.1
1,253,439	+				+0.4
1,253,439	+				+0.6
1,253,440	-				-0.7
1,253,440	-				-1.4
1,253,440	-				+0.7
1,253,440	-				-0.9
1,253,440	-				+0.4
1,253,440	-				+0.1
1,253,440	-				-1.3
1,253,440	-				+0.7
1,253,440	-				-0.0
1,253,440	-				-1.3
1,253,440	-				+0.7
1,253,440	-				-0.7
1,253,440	-				+0.7
1,253,801	+		LRK54_RS05810	0.84	+2.3
1,253,802	-		LRK54_RS05810	0.84	-0.4
1,253,802	-		LRK54_RS05810	0.84	+0.6
1,253,857	-				-0.3
1,253,857	-				-1.6
1,254,112	+		LRK54_RS05815	0.27	-0.1
1,254,208	+		LRK54_RS05815	0.44	-0.6
1,254,208	+		LRK54_RS05815	0.44	-0.2
1,254,208	+		LRK54_RS05815	0.44	-0.2
1,254,208	+		LRK54_RS05815	0.44	+1.1
1,254,208	+		LRK54_RS05815	0.44	+0.0
1,254,208	+		LRK54_RS05815	0.44	+1.3
1,254,209	-		LRK54_RS05815	0.44	+0.9
1,254,209	-		LRK54_RS05815	0.44	+1.7
1,254,209	-		LRK54_RS05815	0.44	+0.2
1,254,209	-		LRK54_RS05815	0.44	+0.1
1,254,209	-		LRK54_RS05815	0.44	-0.1
1,254,209	-		LRK54_RS05815	0.44	+0.9
1,254,209	-		LRK54_RS05815	0.44	+1.5
1,254,209	-		LRK54_RS05815	0.44	-1.0
1,254,355	+		LRK54_RS05815	0.69	+0.1
1,254,355	+		LRK54_RS05815	0.69	+2.0
1,254,355	+		LRK54_RS05815	0.69	+0.0
1,254,355	+		LRK54_RS05815	0.69	+0.0
1,254,355	+		LRK54_RS05815	0.69	+2.1
1,254,355	+		LRK54_RS05815	0.69	-0.2
1,254,355	+		LRK54_RS05815	0.69	+1.0
1,254,355	+		LRK54_RS05815	0.69	+0.9
1,254,355	+		LRK54_RS05815	0.69	-1.0
1,254,355	+		LRK54_RS05815	0.69	+0.2
1,254,355	+		LRK54_RS05815	0.69	+0.4
1,254,355	+		LRK54_RS05815	0.69	+0.3
1,254,355	+		LRK54_RS05815	0.69	+0.2
1,254,355	+		LRK54_RS05815	0.69	-0.2
1,254,355	+		LRK54_RS05815	0.69	+0.5
1,254,355	+		LRK54_RS05815	0.69	+1.4
1,254,355	+		LRK54_RS05815	0.69	-0.7
1,254,355	+		LRK54_RS05815	0.69	+0.3
1,254,355	+		LRK54_RS05815	0.69	+0.4
1,254,355	+		LRK54_RS05815	0.69	-0.9
1,254,355	+		LRK54_RS05815	0.69	-1.0
1,254,355	+		LRK54_RS05815	0.69	-0.7
1,254,355	+		LRK54_RS05815	0.69	-0.5
1,254,355	+		LRK54_RS05815	0.69	+0.6
1,254,355	+		LRK54_RS05815	0.69	+1.3
1,254,355	+		LRK54_RS05815	0.69	+0.4
1,254,355	+		LRK54_RS05815	0.69	+0.1
1,254,355	+		LRK54_RS05815	0.69	+0.2
1,254,355	+		LRK54_RS05815	0.69	-0.8
1,254,355	+		LRK54_RS05815	0.69	+0.6
1,254,355	+		LRK54_RS05815	0.69	+0.3
1,254,356	-		LRK54_RS05815	0.69	-0.8
1,254,356	-		LRK54_RS05815	0.69	-0.5
1,254,356	-		LRK54_RS05815	0.69	+0.1
1,254,356	-		LRK54_RS05815	0.69	-0.5
1,254,356	-		LRK54_RS05815	0.69	-1.2
1,254,356	-		LRK54_RS05815	0.69	-1.7
1,254,356	-		LRK54_RS05815	0.69	+0.5
1,254,356	-		LRK54_RS05815	0.69	+0.3
1,254,356	-		LRK54_RS05815	0.69	+0.2
1,254,356	-		LRK54_RS05815	0.69	-0.6
1,254,356	-		LRK54_RS05815	0.69	-1.0
1,254,356	-		LRK54_RS05815	0.69	-0.7
1,254,356	-		LRK54_RS05815	0.69	+0.0
1,254,356	-		LRK54_RS05815	0.69	-0.2
1,254,356	-		LRK54_RS05815	0.69	+0.7
1,254,356	-		LRK54_RS05815	0.69	-0.3
1,254,356	-		LRK54_RS05815	0.69	+0.2
1,254,356	-		LRK54_RS05815	0.69	-0.1