Experiment: R2A with Other_metal_mix 1 X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK54_RS02015 and LRK54_RS02020 are separated by 53 nucleotides LRK54_RS02020 and LRK54_RS02025 are separated by 4 nucleotides LRK54_RS02025 and LRK54_RS02030 overlap by 4 nucleotides
LRK54_RS02015: LRK54_RS02015 - cation diffusion facilitator family transporter, at 424,608 to 425,510
_RS02015
LRK54_RS02020: LRK54_RS02020 - DUF2058 domain-containing protein, at 425,564 to 426,103
_RS02020
LRK54_RS02025: LRK54_RS02025 - VOC family protein, at 426,108 to 426,500
_RS02025
LRK54_RS02030: LRK54_RS02030 - MmcQ/YjbR family DNA-binding protein, at 426,497 to 426,895
_RS02030
Position (kb) 425
426
427 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 424.575 kb on + strand at 424.575 kb on + strand at 424.575 kb on + strand at 424.575 kb on + strand at 424.575 kb on + strand at 424.575 kb on + strand at 424.575 kb on + strand at 424.575 kb on + strand at 424.575 kb on + strand at 424.575 kb on + strand at 424.575 kb on + strand at 424.575 kb on + strand at 424.575 kb on + strand at 424.575 kb on + strand at 424.575 kb on + strand at 424.575 kb on + strand at 424.575 kb on + strand at 424.576 kb on - strand at 424.576 kb on - strand at 424.576 kb on - strand at 424.576 kb on - strand at 424.576 kb on - strand at 424.576 kb on - strand at 424.576 kb on - strand at 424.576 kb on - strand at 424.576 kb on - strand at 424.576 kb on - strand at 424.576 kb on - strand at 424.576 kb on - strand at 424.576 kb on - strand at 424.842 kb on + strand, within LRK54_RS02015 at 424.842 kb on + strand, within LRK54_RS02015 at 424.842 kb on + strand, within LRK54_RS02015 at 424.842 kb on + strand, within LRK54_RS02015 at 424.842 kb on + strand, within LRK54_RS02015 at 424.842 kb on + strand, within LRK54_RS02015 at 424.842 kb on + strand, within LRK54_RS02015 at 424.842 kb on + strand, within LRK54_RS02015 at 424.843 kb on - strand, within LRK54_RS02015 at 424.843 kb on - strand, within LRK54_RS02015 at 424.843 kb on - strand, within LRK54_RS02015 at 424.843 kb on - strand, within LRK54_RS02015 at 424.843 kb on - strand, within LRK54_RS02015 at 424.843 kb on - strand, within LRK54_RS02015 at 424.867 kb on + strand, within LRK54_RS02015 at 424.868 kb on - strand, within LRK54_RS02015 at 424.868 kb on - strand, within LRK54_RS02015 at 424.868 kb on - strand, within LRK54_RS02015 at 424.902 kb on + strand, within LRK54_RS02015 at 424.902 kb on + strand, within LRK54_RS02015 at 424.903 kb on - strand, within LRK54_RS02015 at 424.903 kb on - strand, within LRK54_RS02015 at 424.903 kb on - strand, within LRK54_RS02015 at 424.903 kb on - strand, within LRK54_RS02015 at 424.903 kb on - strand, within LRK54_RS02015 at 424.903 kb on - strand, within LRK54_RS02015 at 424.903 kb on - strand, within LRK54_RS02015 at 425.023 kb on + strand, within LRK54_RS02015 at 425.023 kb on + strand, within LRK54_RS02015 at 425.023 kb on + strand, within LRK54_RS02015 at 425.023 kb on + strand, within LRK54_RS02015 at 425.023 kb on + strand, within LRK54_RS02015 at 425.023 kb on + strand, within LRK54_RS02015 at 425.023 kb on + strand, within LRK54_RS02015 at 425.023 kb on + strand, within LRK54_RS02015 at 425.023 kb on + strand, within LRK54_RS02015 at 425.023 kb on + strand, within LRK54_RS02015 at 425.023 kb on + strand, within LRK54_RS02015 at 425.024 kb on - strand, within LRK54_RS02015 at 425.024 kb on - strand, within LRK54_RS02015 at 425.024 kb on - strand, within LRK54_RS02015 at 425.024 kb on - strand, within LRK54_RS02015 at 425.024 kb on - strand, within LRK54_RS02015 at 425.024 kb on - strand, within LRK54_RS02015 at 425.024 kb on - strand, within LRK54_RS02015 at 425.024 kb on - strand, within LRK54_RS02015 at 425.024 kb on - strand, within LRK54_RS02015 at 425.024 kb on - strand, within LRK54_RS02015 at 425.024 kb on - strand, within LRK54_RS02015 at 425.024 kb on - strand, within LRK54_RS02015 at 425.024 kb on - strand, within LRK54_RS02015 at 425.024 kb on - strand, within LRK54_RS02015 at 425.024 kb on - strand, within LRK54_RS02015 at 425.024 kb on - strand, within LRK54_RS02015 at 425.024 kb on - strand, within LRK54_RS02015 at 425.024 kb on - strand, within LRK54_RS02015 at 425.024 kb on - strand, within LRK54_RS02015 at 425.024 kb on - strand, within LRK54_RS02015 at 425.024 kb on - strand, within LRK54_RS02015 at 425.523 kb on + strand at 425.523 kb on + strand at 425.523 kb on + strand at 425.523 kb on + strand at 425.523 kb on + strand at 425.523 kb on + strand at 425.523 kb on + strand at 425.523 kb on + strand at 425.523 kb on + strand at 425.523 kb on + strand at 425.523 kb on + strand at 425.523 kb on + strand at 425.523 kb on + strand at 425.523 kb on + strand at 425.523 kb on + strand at 425.523 kb on + strand at 425.523 kb on + strand at 425.523 kb on + strand at 425.523 kb on + strand at 425.523 kb on + strand at 425.524 kb on - strand at 425.524 kb on - strand at 425.524 kb on - strand at 425.524 kb on - strand at 425.524 kb on - strand at 425.524 kb on - strand at 425.524 kb on - strand at 425.524 kb on - strand at 425.524 kb on - strand at 425.524 kb on - strand at 425.524 kb on - strand at 425.524 kb on - strand at 425.524 kb on - strand at 425.524 kb on - strand at 425.524 kb on - strand at 425.524 kb on - strand at 425.948 kb on + strand, within LRK54_RS02020 at 425.948 kb on + strand, within LRK54_RS02020 at 425.948 kb on + strand, within LRK54_RS02020 at 425.949 kb on - strand, within LRK54_RS02020 at 425.949 kb on - strand, within LRK54_RS02020 at 426.062 kb on + strand at 426.062 kb on + strand at 426.062 kb on + strand at 426.062 kb on + strand at 426.062 kb on + strand at 426.062 kb on + strand at 426.062 kb on + strand at 426.063 kb on - strand at 426.063 kb on - strand at 426.063 kb on - strand at 426.063 kb on - strand at 426.063 kb on - strand at 426.063 kb on - strand at 426.063 kb on - strand at 426.063 kb on - strand at 426.063 kb on - strand at 426.065 kb on + strand at 426.066 kb on - strand at 426.145 kb on + strand at 426.145 kb on + strand at 426.146 kb on - strand at 426.146 kb on - strand at 426.146 kb on - strand at 426.146 kb on - strand at 426.175 kb on + strand, within LRK54_RS02025 at 426.175 kb on + strand, within LRK54_RS02025 at 426.175 kb on + strand, within LRK54_RS02025 at 426.175 kb on + strand, within LRK54_RS02025 at 426.175 kb on + strand, within LRK54_RS02025 at 426.175 kb on + strand, within LRK54_RS02025 at 426.176 kb on - strand, within LRK54_RS02025 at 426.176 kb on - strand, within LRK54_RS02025 at 426.317 kb on + strand, within LRK54_RS02025 at 426.318 kb on - strand, within LRK54_RS02025 at 426.436 kb on + strand, within LRK54_RS02025 at 426.436 kb on + strand, within LRK54_RS02025 at 426.436 kb on + strand, within LRK54_RS02025 at 426.436 kb on + strand, within LRK54_RS02025 at 426.436 kb on + strand, within LRK54_RS02025 at 426.437 kb on - strand, within LRK54_RS02025 at 426.437 kb on - strand, within LRK54_RS02025 at 426.437 kb on - strand, within LRK54_RS02025 at 426.437 kb on - strand, within LRK54_RS02025 at 426.437 kb on - strand, within LRK54_RS02025 at 426.437 kb on - strand, within LRK54_RS02025 at 426.437 kb on - strand, within LRK54_RS02025 at 426.437 kb on - strand, within LRK54_RS02025 at 426.457 kb on + strand, within LRK54_RS02025 at 426.457 kb on + strand, within LRK54_RS02025 at 426.458 kb on - strand, within LRK54_RS02025 at 426.458 kb on - strand, within LRK54_RS02025 at 426.574 kb on + strand, within LRK54_RS02030 at 426.574 kb on + strand, within LRK54_RS02030 at 426.574 kb on + strand, within LRK54_RS02030 at 426.574 kb on + strand, within LRK54_RS02030 at 426.574 kb on + strand, within LRK54_RS02030 at 426.574 kb on + strand, within LRK54_RS02030 at 426.574 kb on + strand, within LRK54_RS02030 at 426.574 kb on + strand, within LRK54_RS02030 at 426.574 kb on + strand, within LRK54_RS02030 at 426.574 kb on + strand, within LRK54_RS02030 at 426.574 kb on + strand, within LRK54_RS02030 at 426.574 kb on + strand, within LRK54_RS02030 at 426.575 kb on - strand, within LRK54_RS02030 at 426.575 kb on - strand, within LRK54_RS02030 at 426.575 kb on - strand, within LRK54_RS02030 at 426.575 kb on - strand, within LRK54_RS02030 at 426.575 kb on - strand, within LRK54_RS02030 at 426.575 kb on - strand, within LRK54_RS02030 at 426.575 kb on - strand, within LRK54_RS02030 at 426.575 kb on - strand, within LRK54_RS02030 at 426.576 kb on + strand, within LRK54_RS02030 at 426.576 kb on + strand, within LRK54_RS02030 at 426.576 kb on + strand, within LRK54_RS02030 at 426.576 kb on + strand, within LRK54_RS02030 at 426.576 kb on + strand, within LRK54_RS02030 at 426.576 kb on + strand, within LRK54_RS02030 at 426.577 kb on - strand, within LRK54_RS02030 at 426.577 kb on - strand, within LRK54_RS02030 at 426.577 kb on - strand, within LRK54_RS02030 at 426.577 kb on - strand, within LRK54_RS02030 at 426.577 kb on - strand, within LRK54_RS02030 at 426.577 kb on - strand, within LRK54_RS02030 at 426.577 kb on - strand, within LRK54_RS02030 at 426.577 kb on - strand, within LRK54_RS02030 at 426.577 kb on - strand, within LRK54_RS02030 at 426.577 kb on - strand, within LRK54_RS02030 at 426.577 kb on - strand, within LRK54_RS02030 at 426.577 kb on - strand, within LRK54_RS02030 at 426.660 kb on + strand, within LRK54_RS02030 at 426.661 kb on - strand, within LRK54_RS02030 at 426.661 kb on - strand, within LRK54_RS02030 at 426.661 kb on - strand, within LRK54_RS02030 at 426.814 kb on + strand, within LRK54_RS02030 at 426.958 kb on + strand at 427.082 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Other_metal_mix 1 X remove 424,575 + +0.3 424,575 + +1.0 424,575 + +0.6 424,575 + -0.0 424,575 + -0.7 424,575 + +0.0 424,575 + +0.1 424,575 + +0.1 424,575 + -2.0 424,575 + -0.2 424,575 + +0.1 424,575 + +0.7 424,575 + -0.6 424,575 + -0.2 424,575 + +0.7 424,575 + +0.2 424,575 + -2.3 424,576 - -1.3 424,576 - +0.4 424,576 - -0.2 424,576 - +1.2 424,576 - +0.7 424,576 - +0.2 424,576 - -0.5 424,576 - -0.2 424,576 - -0.5 424,576 - -1.3 424,576 - -1.9 424,576 - -0.4 424,576 - -0.3 424,842 + LRK54_RS02015 0.26 -0.6 424,842 + LRK54_RS02015 0.26 -1.0 424,842 + LRK54_RS02015 0.26 -0.7 424,842 + LRK54_RS02015 0.26 -0.5 424,842 + LRK54_RS02015 0.26 -0.0 424,842 + LRK54_RS02015 0.26 -0.3 424,842 + LRK54_RS02015 0.26 -0.9 424,842 + LRK54_RS02015 0.26 -0.5 424,843 - LRK54_RS02015 0.26 +0.1 424,843 - LRK54_RS02015 0.26 -0.5 424,843 - LRK54_RS02015 0.26 -0.7 424,843 - LRK54_RS02015 0.26 +0.2 424,843 - LRK54_RS02015 0.26 -0.5 424,843 - LRK54_RS02015 0.26 -0.1 424,867 + LRK54_RS02015 0.29 +0.8 424,868 - LRK54_RS02015 0.29 +0.2 424,868 - LRK54_RS02015 0.29 -0.6 424,868 - LRK54_RS02015 0.29 -0.4 424,902 + LRK54_RS02015 0.33 +1.9 424,902 + LRK54_RS02015 0.33 -1.3 424,903 - LRK54_RS02015 0.33 -0.0 424,903 - LRK54_RS02015 0.33 -0.1 424,903 - LRK54_RS02015 0.33 -0.3 424,903 - LRK54_RS02015 0.33 +0.7 424,903 - LRK54_RS02015 0.33 -1.3 424,903 - LRK54_RS02015 0.33 -0.2 424,903 - LRK54_RS02015 0.33 +0.1 425,023 + LRK54_RS02015 0.46 -1.4 425,023 + LRK54_RS02015 0.46 -0.1 425,023 + LRK54_RS02015 0.46 -0.7 425,023 + LRK54_RS02015 0.46 -1.0 425,023 + LRK54_RS02015 0.46 +2.3 425,023 + LRK54_RS02015 0.46 -1.6 425,023 + LRK54_RS02015 0.46 -0.1 425,023 + LRK54_RS02015 0.46 -0.9 425,023 + LRK54_RS02015 0.46 +0.2 425,023 + LRK54_RS02015 0.46 +0.2 425,023 + LRK54_RS02015 0.46 -1.0 425,024 - LRK54_RS02015 0.46 -0.7 425,024 - LRK54_RS02015 0.46 -2.4 425,024 - LRK54_RS02015 0.46 -0.0 425,024 - LRK54_RS02015 0.46 +0.9 425,024 - LRK54_RS02015 0.46 -0.6 425,024 - LRK54_RS02015 0.46 +1.5 425,024 - LRK54_RS02015 0.46 -0.3 425,024 - LRK54_RS02015 0.46 -2.7 425,024 - LRK54_RS02015 0.46 +1.1 425,024 - LRK54_RS02015 0.46 -0.7 425,024 - LRK54_RS02015 0.46 -0.9 425,024 - LRK54_RS02015 0.46 -0.1 425,024 - LRK54_RS02015 0.46 -0.4 425,024 - LRK54_RS02015 0.46 -0.3 425,024 - LRK54_RS02015 0.46 +1.9 425,024 - LRK54_RS02015 0.46 -0.2 425,024 - LRK54_RS02015 0.46 +1.1 425,024 - LRK54_RS02015 0.46 -0.3 425,024 - LRK54_RS02015 0.46 +0.4 425,024 - LRK54_RS02015 0.46 -1.8 425,024 - LRK54_RS02015 0.46 -0.3 425,523 + +0.0 425,523 + +0.7 425,523 + -0.1 425,523 + -0.0 425,523 + -1.5 425,523 + +0.3 425,523 + +0.6 425,523 + -0.2 425,523 + +0.7 425,523 + +1.3 425,523 + -0.0 425,523 + -0.0 425,523 + -0.3 425,523 + -1.3 425,523 + -0.2 425,523 + +1.1 425,523 + +0.0 425,523 + -0.6 425,523 + +0.3 425,523 + +1.3 425,524 - -0.4 425,524 - -0.3 425,524 - +1.6 425,524 - -1.2 425,524 - -0.0 425,524 - +1.2 425,524 - -0.3 425,524 - +0.1 425,524 - -1.7 425,524 - +0.6 425,524 - -0.3 425,524 - -2.3 425,524 - -0.1 425,524 - -0.5 425,524 - -1.1 425,524 - -0.5 425,948 + LRK54_RS02020 0.71 -2.5 425,948 + LRK54_RS02020 0.71 -1.3 425,948 + LRK54_RS02020 0.71 +1.3 425,949 - LRK54_RS02020 0.71 -0.7 425,949 - LRK54_RS02020 0.71 -1.6 426,062 + -1.0 426,062 + -1.6 426,062 + -0.7 426,062 + +0.6 426,062 + -0.8 426,062 + -0.9 426,062 + -0.3 426,063 - -2.8 426,063 - -1.4 426,063 - -0.9 426,063 - +0.3 426,063 - -0.1 426,063 - +1.2 426,063 - -3.0 426,063 - +1.1 426,063 - -0.7 426,065 + -1.3 426,066 - +0.2 426,145 + -2.0 426,145 + -0.5 426,146 - -0.1 426,146 - +0.1 426,146 - +0.3 426,146 - +0.7 426,175 + LRK54_RS02025 0.17 -0.5 426,175 + LRK54_RS02025 0.17 -0.9 426,175 + LRK54_RS02025 0.17 +0.7 426,175 + LRK54_RS02025 0.17 +1.3 426,175 + LRK54_RS02025 0.17 +0.7 426,175 + LRK54_RS02025 0.17 -1.0 426,176 - LRK54_RS02025 0.17 -0.1 426,176 - LRK54_RS02025 0.17 +0.8 426,317 + LRK54_RS02025 0.53 -1.3 426,318 - LRK54_RS02025 0.53 +0.5 426,436 + LRK54_RS02025 0.83 -0.8 426,436 + LRK54_RS02025 0.83 +2.1 426,436 + LRK54_RS02025 0.83 -0.4 426,436 + LRK54_RS02025 0.83 +0.4 426,436 + LRK54_RS02025 0.83 +0.6 426,437 - LRK54_RS02025 0.84 -1.1 426,437 - LRK54_RS02025 0.84 +0.3 426,437 - LRK54_RS02025 0.84 +2.3 426,437 - LRK54_RS02025 0.84 +0.2 426,437 - LRK54_RS02025 0.84 +2.9 426,437 - LRK54_RS02025 0.84 -0.3 426,437 - LRK54_RS02025 0.84 +0.9 426,437 - LRK54_RS02025 0.84 -0.4 426,457 + LRK54_RS02025 0.89 +0.4 426,457 + LRK54_RS02025 0.89 +1.0 426,458 - LRK54_RS02025 0.89 +0.7 426,458 - LRK54_RS02025 0.89 -0.9 426,574 + LRK54_RS02030 0.19 +0.3 426,574 + LRK54_RS02030 0.19 -0.3 426,574 + LRK54_RS02030 0.19 -0.0 426,574 + LRK54_RS02030 0.19 -0.5 426,574 + LRK54_RS02030 0.19 +0.5 426,574 + LRK54_RS02030 0.19 -0.9 426,574 + LRK54_RS02030 0.19 +0.3 426,574 + LRK54_RS02030 0.19 -1.9 426,574 + LRK54_RS02030 0.19 +0.1 426,574 + LRK54_RS02030 0.19 +0.4 426,574 + LRK54_RS02030 0.19 -0.2 426,574 + LRK54_RS02030 0.19 -0.6 426,575 - LRK54_RS02030 0.20 +0.4 426,575 - LRK54_RS02030 0.20 -0.4 426,575 - LRK54_RS02030 0.20 -0.0 426,575 - LRK54_RS02030 0.20 -0.0 426,575 - LRK54_RS02030 0.20 -0.1 426,575 - LRK54_RS02030 0.20 -0.7 426,575 - LRK54_RS02030 0.20 +1.1 426,575 - LRK54_RS02030 0.20 -0.2 426,576 + LRK54_RS02030 0.20 -0.6 426,576 + LRK54_RS02030 0.20 +1.1 426,576 + LRK54_RS02030 0.20 -0.3 426,576 + LRK54_RS02030 0.20 -1.8 426,576 + LRK54_RS02030 0.20 -0.4 426,576 + LRK54_RS02030 0.20 -1.9 426,577 - LRK54_RS02030 0.20 -0.9 426,577 - LRK54_RS02030 0.20 -0.8 426,577 - LRK54_RS02030 0.20 -1.1 426,577 - LRK54_RS02030 0.20 -0.1 426,577 - LRK54_RS02030 0.20 +0.5 426,577 - LRK54_RS02030 0.20 -3.4 426,577 - LRK54_RS02030 0.20 -0.5 426,577 - LRK54_RS02030 0.20 +0.1 426,577 - LRK54_RS02030 0.20 -0.6 426,577 - LRK54_RS02030 0.20 -1.0 426,577 - LRK54_RS02030 0.20 -0.6 426,577 - LRK54_RS02030 0.20 -0.7 426,660 + LRK54_RS02030 0.41 +2.3 426,661 - LRK54_RS02030 0.41 -0.7 426,661 - LRK54_RS02030 0.41 -1.5 426,661 - LRK54_RS02030 0.41 -0.5 426,814 + LRK54_RS02030 0.79 +0.1 426,958 + +1.4 427,082 - -2.9
Or see this region's nucleotide sequence