Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS33940

Experiment: m-Inositol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS33935 and BPHYT_RS33940 are separated by 4 nucleotidesBPHYT_RS33940 and BPHYT_RS33945 are separated by 3 nucleotidesBPHYT_RS33945 and BPHYT_RS33950 are separated by 157 nucleotides BPHYT_RS33935: BPHYT_RS33935 - succinate dehydrogenase flavoprotein subunit, at 3,204,789 to 3,206,564 _RS33935 BPHYT_RS33940: BPHYT_RS33940 - succinate dehydrogenase, at 3,206,569 to 3,206,937 _RS33940 BPHYT_RS33945: BPHYT_RS33945 - succinate dehydrogenase, at 3,206,941 to 3,207,357 _RS33945 BPHYT_RS33950: BPHYT_RS33950 - GntR family transcriptional regulator, at 3,207,515 to 3,208,315 _RS33950 Position (kb) 3206 3207Strain fitness (log2 ratio) -3 -2 -1 0 1at 3207.376 kb on - strandat 3207.445 kb on - strandat 3207.522 kb on - strandat 3207.537 kb on + strandat 3207.537 kb on + strandat 3207.537 kb on + strandat 3207.538 kb on - strandat 3207.538 kb on - strandat 3207.538 kb on - strandat 3207.555 kb on + strandat 3207.555 kb on + strandat 3207.556 kb on - strandat 3207.556 kb on - strandat 3207.591 kb on + strandat 3207.592 kb on - strandat 3207.592 kb on - strandat 3207.592 kb on - strandat 3207.595 kb on + strand, within BPHYT_RS33950at 3207.595 kb on + strand, within BPHYT_RS33950at 3207.595 kb on + strand, within BPHYT_RS33950at 3207.595 kb on + strand, within BPHYT_RS33950at 3207.595 kb on + strand, within BPHYT_RS33950at 3207.595 kb on + strand, within BPHYT_RS33950at 3207.596 kb on - strand, within BPHYT_RS33950at 3207.596 kb on - strand, within BPHYT_RS33950at 3207.596 kb on - strand, within BPHYT_RS33950at 3207.596 kb on - strand, within BPHYT_RS33950at 3207.596 kb on - strand, within BPHYT_RS33950at 3207.596 kb on - strand, within BPHYT_RS33950at 3207.596 kb on - strand, within BPHYT_RS33950at 3207.596 kb on - strand, within BPHYT_RS33950at 3207.596 kb on - strand, within BPHYT_RS33950at 3207.617 kb on + strand, within BPHYT_RS33950at 3207.618 kb on - strand, within BPHYT_RS33950at 3207.738 kb on + strand, within BPHYT_RS33950at 3207.751 kb on + strand, within BPHYT_RS33950at 3207.751 kb on + strand, within BPHYT_RS33950at 3207.751 kb on + strand, within BPHYT_RS33950at 3207.752 kb on - strand, within BPHYT_RS33950at 3207.752 kb on - strand, within BPHYT_RS33950at 3207.752 kb on - strand, within BPHYT_RS33950at 3207.752 kb on - strand, within BPHYT_RS33950at 3207.752 kb on - strand, within BPHYT_RS33950at 3207.754 kb on - strand, within BPHYT_RS33950at 3207.754 kb on - strand, within BPHYT_RS33950at 3207.861 kb on - strand, within BPHYT_RS33950

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m-Inositol (C)
remove
3,207,376 - -0.0
3,207,445 - -0.2
3,207,522 - -0.5
3,207,537 + -2.0
3,207,537 + -3.3
3,207,537 + -2.2
3,207,538 - -1.0
3,207,538 - -0.4
3,207,538 - -0.1
3,207,555 + -0.8
3,207,555 + -0.5
3,207,556 - +0.7
3,207,556 - +0.0
3,207,591 + -0.3
3,207,592 - -0.1
3,207,592 - +1.3
3,207,592 - +0.5
3,207,595 + BPHYT_RS33950 0.10 -0.2
3,207,595 + BPHYT_RS33950 0.10 -1.7
3,207,595 + BPHYT_RS33950 0.10 -0.9
3,207,595 + BPHYT_RS33950 0.10 -1.6
3,207,595 + BPHYT_RS33950 0.10 -1.2
3,207,595 + BPHYT_RS33950 0.10 -1.4
3,207,596 - BPHYT_RS33950 0.10 -1.3
3,207,596 - BPHYT_RS33950 0.10 -0.3
3,207,596 - BPHYT_RS33950 0.10 -0.1
3,207,596 - BPHYT_RS33950 0.10 +0.1
3,207,596 - BPHYT_RS33950 0.10 -0.1
3,207,596 - BPHYT_RS33950 0.10 -0.7
3,207,596 - BPHYT_RS33950 0.10 -0.8
3,207,596 - BPHYT_RS33950 0.10 -0.9
3,207,596 - BPHYT_RS33950 0.10 -1.5
3,207,617 + BPHYT_RS33950 0.13 -0.9
3,207,618 - BPHYT_RS33950 0.13 -0.3
3,207,738 + BPHYT_RS33950 0.28 +1.7
3,207,751 + BPHYT_RS33950 0.29 -0.3
3,207,751 + BPHYT_RS33950 0.29 -0.4
3,207,751 + BPHYT_RS33950 0.29 -0.5
3,207,752 - BPHYT_RS33950 0.30 -1.5
3,207,752 - BPHYT_RS33950 0.30 +0.0
3,207,752 - BPHYT_RS33950 0.30 -0.5
3,207,752 - BPHYT_RS33950 0.30 -0.2
3,207,752 - BPHYT_RS33950 0.30 -0.5
3,207,754 - BPHYT_RS33950 0.30 -1.4
3,207,754 - BPHYT_RS33950 0.30 -1.0
3,207,861 - BPHYT_RS33950 0.43 -0.1

Or see this region's nucleotide sequence