Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS13910

Experiment: m-Inositol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS13900 and BPHYT_RS13905 are separated by 103 nucleotidesBPHYT_RS13905 and BPHYT_RS13910 are separated by 64 nucleotidesBPHYT_RS13910 and BPHYT_RS13915 overlap by 4 nucleotides BPHYT_RS13900: BPHYT_RS13900 - ATPase, at 3,173,082 to 3,174,239 _RS13900 BPHYT_RS13905: BPHYT_RS13905 - ABC transporter ATP-binding protein, at 3,174,343 to 3,175,119 _RS13905 BPHYT_RS13910: BPHYT_RS13910 - 5-dehydro-2-deoxygluconokinase (EC 2.7.1.92); possible 5-dehydro-2-deoxyphosphogluconate aldolase DUF2090 (EC 4.1.2.29) (from data), at 3,175,184 to 3,177,229 _RS13910 BPHYT_RS13915: BPHYT_RS13915 - 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase, at 3,177,226 to 3,179,199 _RS13915 Position (kb) 3175 3176 3177 3178Strain fitness (log2 ratio) -3 -2 -1 0 1at 3174.211 kb on - strandat 3175.545 kb on + strand, within BPHYT_RS13910at 3175.631 kb on + strand, within BPHYT_RS13910at 3175.631 kb on + strand, within BPHYT_RS13910at 3175.968 kb on + strand, within BPHYT_RS13910at 3176.654 kb on - strand, within BPHYT_RS13910at 3176.847 kb on - strand, within BPHYT_RS13910at 3177.240 kb on - strandat 3177.683 kb on + strand, within BPHYT_RS13915at 3178.024 kb on + strand, within BPHYT_RS13915

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m-Inositol (C)
remove
3,174,211 - -2.8
3,175,545 + BPHYT_RS13910 0.18 -2.4
3,175,631 + BPHYT_RS13910 0.22 -2.4
3,175,631 + BPHYT_RS13910 0.22 -3.4
3,175,968 + BPHYT_RS13910 0.38 -3.2
3,176,654 - BPHYT_RS13910 0.72 -1.4
3,176,847 - BPHYT_RS13910 0.81 -3.7
3,177,240 - -3.6
3,177,683 + BPHYT_RS13915 0.23 -0.4
3,178,024 + BPHYT_RS13915 0.40 -0.8

Or see this region's nucleotide sequence