Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS13895

Experiment: m-Inositol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS13890 and BPHYT_RS13895 are separated by 277 nucleotidesBPHYT_RS13895 and BPHYT_RS13900 are separated by 147 nucleotides BPHYT_RS13890: BPHYT_RS13890 - RpiR family transcriptional regulator, at 3,170,729 to 3,171,610 _RS13890 BPHYT_RS13895: BPHYT_RS13895 - sugar ABC transporter substrate-binding protein, at 3,171,888 to 3,172,934 _RS13895 BPHYT_RS13900: BPHYT_RS13900 - ATPase, at 3,173,082 to 3,174,239 _RS13900 Position (kb) 3171 3172 3173Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 3171.112 kb on - strand, within BPHYT_RS13890at 3171.150 kb on + strand, within BPHYT_RS13890at 3171.354 kb on + strand, within BPHYT_RS13890at 3171.504 kb on + strand, within BPHYT_RS13890at 3171.544 kb on - strandat 3171.631 kb on - strandat 3171.868 kb on + strandat 3172.716 kb on + strand, within BPHYT_RS13895at 3172.845 kb on + strandat 3172.914 kb on + strandat 3172.945 kb on + strandat 3172.946 kb on - strandat 3173.127 kb on - strandat 3173.326 kb on - strand, within BPHYT_RS13900at 3173.669 kb on + strand, within BPHYT_RS13900

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Per-strain Table

Position Strand Gene LocusTag Fraction m-Inositol (C)
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3,171,112 - BPHYT_RS13890 0.43 -0.1
3,171,150 + BPHYT_RS13890 0.48 -3.4
3,171,354 + BPHYT_RS13890 0.71 -1.2
3,171,504 + BPHYT_RS13890 0.88 -3.5
3,171,544 - -3.0
3,171,631 - -2.0
3,171,868 + -1.6
3,172,716 + BPHYT_RS13895 0.79 -4.8
3,172,845 + -4.3
3,172,914 + -2.9
3,172,945 + -2.4
3,172,946 - -3.3
3,173,127 - -3.6
3,173,326 - BPHYT_RS13900 0.21 -3.4
3,173,669 + BPHYT_RS13900 0.51 -2.2

Or see this region's nucleotide sequence