Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS04400

Experiment: m-Inositol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS04395 and BPHYT_RS04400 are separated by 725 nucleotides BPHYT_RS04395: BPHYT_RS04395 - methyl-accepting chemotaxis protein, at 1,012,933 to 1,014,480 _RS04395 BPHYT_RS04400: BPHYT_RS04400 - Crp/Fnr family transcriptional regulator, at 1,015,206 to 1,015,937 _RS04400 Position (kb) 1015 1016Strain fitness (log2 ratio) -2 -1 0 1at 1014.513 kb on + strandat 1014.551 kb on + strandat 1014.588 kb on - strandat 1014.699 kb on - strandat 1014.833 kb on + strandat 1014.834 kb on - strandat 1014.847 kb on + strandat 1014.847 kb on + strandat 1014.848 kb on - strandat 1014.848 kb on - strandat 1014.848 kb on - strandat 1014.908 kb on + strandat 1014.910 kb on + strandat 1015.046 kb on - strandat 1015.189 kb on - strandat 1015.211 kb on + strandat 1015.243 kb on + strandat 1015.354 kb on - strand, within BPHYT_RS04400at 1015.836 kb on - strand, within BPHYT_RS04400at 1015.869 kb on + strandat 1015.870 kb on - strandat 1016.081 kb on + strandat 1016.082 kb on - strandat 1016.195 kb on - strandat 1016.265 kb on + strandat 1016.329 kb on + strandat 1016.384 kb on + strandat 1016.530 kb on + strandat 1016.867 kb on + strandat 1016.920 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m-Inositol (C)
remove
1,014,513 + +0.3
1,014,551 + -0.5
1,014,588 - +0.6
1,014,699 - -0.4
1,014,833 + +0.1
1,014,834 - +0.3
1,014,847 + -0.3
1,014,847 + -0.1
1,014,848 - -0.1
1,014,848 - +0.5
1,014,848 - +0.2
1,014,908 + -2.1
1,014,910 + -0.2
1,015,046 - +0.2
1,015,189 - +0.8
1,015,211 + -0.1
1,015,243 + -0.9
1,015,354 - BPHYT_RS04400 0.20 -2.1
1,015,836 - BPHYT_RS04400 0.86 +0.7
1,015,869 + -0.6
1,015,870 - +0.3
1,016,081 + +0.1
1,016,082 - -0.5
1,016,195 - -0.2
1,016,265 + -0.5
1,016,329 + +0.5
1,016,384 + -0.2
1,016,530 + +1.2
1,016,867 + -0.5
1,016,920 + +0.2

Or see this region's nucleotide sequence