Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS20480

Experiment: CDM1 without Phenylalanine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	CDM1 without Phenylalanine
2,419,522	+		BBR_RS20470	0.67	+3.3
2,419,530	-		BBR_RS20470	0.68	+0.7
2,419,540	+		BBR_RS20470	0.70	-1.8
2,419,546	+		BBR_RS20470	0.71	-1.4
2,419,547	-		BBR_RS20470	0.71	-0.3
2,419,554	-		BBR_RS20470	0.72	+0.4
2,419,556	+		BBR_RS20470	0.72	+1.2
2,419,565	-		BBR_RS20470	0.74	-0.9
2,419,565	-		BBR_RS20470	0.74	+0.4
2,419,565	-		BBR_RS20470	0.74	+1.2
2,419,565	-		BBR_RS20470	0.74	+0.9
2,419,605	-		BBR_RS20470	0.80	-1.0
2,419,619	+		BBR_RS20470	0.82	+4.8
2,419,637	+		BBR_RS20470	0.85	+2.0
2,419,637	+		BBR_RS20470	0.85	+2.5
2,419,643	+		BBR_RS20470	0.85	-1.3
2,419,645	-		BBR_RS20470	0.86	-2.0
2,419,645	-		BBR_RS20470	0.86	+0.8
2,419,646	+		BBR_RS20470	0.86	+2.0
2,419,653	-		BBR_RS20470	0.87	+1.0
2,419,683	-				-0.9
2,419,687	+				+2.8
2,419,687	+				+4.1
2,419,688	-				+3.3
2,419,688	-				+0.8
2,419,688	-				+2.1
2,419,688	-				-1.7
2,419,688	-				+0.8
2,419,692	+				+0.3
2,419,692	+				+1.4
2,419,694	+				+1.5
2,419,695	-				-2.8
2,419,700	-				+1.1
2,419,700	-				+1.8
2,419,700	-				+1.5
2,419,702	-				-2.5
2,419,704	+				+1.4
2,419,704	+				+3.8
2,419,712	-				+1.0
2,419,721	+				-0.8
2,419,728	+				-1.8
2,419,728	-				-1.3
2,419,734	+				+2.1
2,419,734	+				+1.4
2,419,735	+				+1.7
2,419,739	+				+4.1
2,419,742	-				+0.2
2,419,742	-				+2.2
2,419,742	-				+1.2
2,419,744	-				-1.0
2,419,748	+				+1.1
2,419,748	+				+1.0
2,419,757	-				-1.2
2,419,757	-				+0.2
2,419,759	-				-0.3
2,419,778	-				-0.9
2,419,779	+				+4.0
2,419,779	+				+3.8
2,419,781	+				+2.5
2,419,787	-				+1.4
2,419,788	-				-2.9
2,419,788	-				+0.4
2,419,800	-				+2.5
2,419,800	-				+1.2
2,419,813	-				+1.4
2,419,818	-				+2.9
2,419,834	+				+1.1
2,419,835	-				-3.1
2,419,841	+				+0.5
2,419,841	+				+1.0
2,419,841	+				-0.6
2,419,842	-				+3.0
2,419,842	-				+1.3
2,419,842	-				+1.6
2,419,842	-				-0.1
2,419,842	-				-2.5
2,419,849	+				-1.7
2,419,849	+				-3.9
2,419,849	-				+1.6
2,419,849	-				+2.2
2,419,854	+				+1.9
2,419,854	+				-1.4
2,419,854	+				+2.3
2,419,854	+				-1.6
2,419,854	+				+1.2
2,419,854	+				-1.9
2,419,854	+				+2.1
2,419,854	+				-1.3
2,419,854	+				+2.6
2,419,854	+				-1.0
2,419,854	+				-1.1
2,419,854	+				+0.0
2,419,854	+				+1.3
2,419,854	+				+2.5
2,419,854	+				+1.7
2,419,854	+				-0.6
2,419,854	+				+1.1
2,419,855	+				-1.9
2,419,855	+				+1.6
2,419,855	+				+2.0
2,419,856	+				+0.9
2,419,856	+				+1.3
2,419,856	+				-1.0
2,419,856	+				-0.1
2,419,857	-				+0.3
2,419,857	-				-0.3
2,419,861	+				+1.1
2,419,862	-				+2.4
2,419,862	-				-1.8
2,419,862	-				+1.7
2,419,862	-				-1.7
2,419,862	-				-1.0
2,419,862	-				+3.1
2,419,862	-				+3.4
2,419,862	-				+3.5
2,419,862	-				-1.9
2,419,862	-				+2.7
2,419,862	-				+3.0
2,419,862	-				+0.1
2,419,862	-				+0.2
2,419,862	-				+2.0
2,419,862	-				-1.3
2,419,862	-				+1.4
2,419,862	-				+1.9
2,419,862	-				-0.9
2,419,862	-				+2.4
2,419,862	-				+2.9
2,419,862	-				-2.6
2,419,862	-				-0.3
2,419,862	-				-2.1
2,419,862	-				-1.1
2,419,862	-				+2.6
2,419,862	-				+1.6
2,419,862	-				+2.9
2,419,862	-				+3.1
2,419,862	-				-2.2
2,419,862	-				+1.8
2,419,862	-				+0.4
2,419,862	-				+0.0
2,419,862	-				-0.2
2,419,862	-				+0.7
2,419,862	-				-0.5
2,419,862	-				+2.7
2,419,862	-				-1.2
2,419,864	-				+3.3
2,419,864	-				+2.9
2,419,864	-				+0.4
2,419,866	+				-2.1
2,419,867	-				+2.0
2,419,869	-				-1.5
2,419,869	-				+0.7
2,419,874	-				+1.5
2,419,874	-				+2.2
2,419,874	-				+3.5
2,419,874	-				+1.7
2,419,886	-				+2.7
2,419,888	+				+1.5
2,419,919	+		BBR_RS20475	0.10	-2.2
2,419,919	+		BBR_RS20475	0.10	-1.7
2,419,919	+		BBR_RS20475	0.10	-0.7
2,419,919	+		BBR_RS20475	0.10	+0.4
2,419,927	-		BBR_RS20475	0.12	+0.4
2,419,927	-		BBR_RS20475	0.12	+3.5
2,419,927	-		BBR_RS20475	0.12	-3.0
2,419,927	-		BBR_RS20475	0.12	-1.6
2,419,943	+		BBR_RS20475	0.15	-0.6
2,419,949	+		BBR_RS20475	0.16	+1.2
2,419,951	-		BBR_RS20475	0.16	+3.0
2,419,951	-		BBR_RS20475	0.16	-1.2
2,419,951	-		BBR_RS20475	0.16	+1.5
2,419,957	-		BBR_RS20475	0.18	-2.0
2,419,959	-		BBR_RS20475	0.18	-2.3
2,419,959	-		BBR_RS20475	0.18	+1.8
2,419,959	-		BBR_RS20475	0.18	+1.5
2,419,961	-		BBR_RS20475	0.18	-0.5
2,419,963	-		BBR_RS20475	0.19	+2.7
2,419,965	+		BBR_RS20475	0.19	-1.8
2,419,965	+		BBR_RS20475	0.19	-1.4
2,419,965	+		BBR_RS20475	0.19	+2.5
2,419,965	-		BBR_RS20475	0.19	+1.5
2,419,965	-		BBR_RS20475	0.19	+2.3
2,419,973	-		BBR_RS20475	0.20	+2.1
2,419,973	-		BBR_RS20475	0.20	+2.2
2,419,973	-		BBR_RS20475	0.20	-1.3
2,419,973	-		BBR_RS20475	0.20	+1.9
2,419,973	-		BBR_RS20475	0.20	+1.2
2,419,994	-		BBR_RS20475	0.24	+2.0
2,419,999	+		BBR_RS20475	0.25	-1.7
2,419,999	+		BBR_RS20475	0.25	+0.7
2,419,999	+		BBR_RS20475	0.25	+1.9
2,420,000	-		BBR_RS20475	0.26	+3.9
2,420,007	-		BBR_RS20475	0.27	+0.8
2,420,007	-		BBR_RS20475	0.27	+0.0
2,420,007	-		BBR_RS20475	0.27	-0.1
2,420,008	-		BBR_RS20475	0.27	+1.5
2,420,030	+		BBR_RS20475	0.31	-1.5
2,420,033	-		BBR_RS20475	0.32	+0.1
2,420,042	-		BBR_RS20475	0.33	+1.9
2,420,044	+		BBR_RS20475	0.34	+2.3
2,420,049	+		BBR_RS20475	0.35	+1.0
2,420,049	+		BBR_RS20475	0.35	-1.3
2,420,049	+		BBR_RS20475	0.35	-0.4
2,420,049	+		BBR_RS20475	0.35	+2.5
2,420,049	+		BBR_RS20475	0.35	-1.0
2,420,049	+		BBR_RS20475	0.35	+2.6
2,420,051	+		BBR_RS20475	0.35	+0.0
2,420,051	+		BBR_RS20475	0.35	+1.5
2,420,051	+		BBR_RS20475	0.35	-0.3
2,420,051	+		BBR_RS20475	0.35	+3.3
2,420,057	-		BBR_RS20475	0.36	+3.4
2,420,057	-		BBR_RS20475	0.36	+1.9
2,420,057	-		BBR_RS20475	0.36	-0.2
2,420,057	-		BBR_RS20475	0.36	-0.6
2,420,057	-		BBR_RS20475	0.36	+1.3
2,420,058	+		BBR_RS20475	0.36	-0.9
2,420,058	+		BBR_RS20475	0.36	+1.9
2,420,059	-		BBR_RS20475	0.36	-1.3
2,420,059	-		BBR_RS20475	0.36	+1.1
2,420,059	-		BBR_RS20475	0.36	-0.0
2,420,059	-		BBR_RS20475	0.36	+1.3
2,420,059	-		BBR_RS20475	0.36	+0.8
2,420,059	-		BBR_RS20475	0.36	+2.4
2,420,059	-		BBR_RS20475	0.36	+2.3
2,420,059	-		BBR_RS20475	0.36	+3.0
2,420,059	-		BBR_RS20475	0.36	+0.5
2,420,059	-		BBR_RS20475	0.36	+3.3
2,420,075	+		BBR_RS20475	0.39	+0.9
2,420,076	-		BBR_RS20475	0.40	-1.9
2,420,076	-		BBR_RS20475	0.40	+1.5
2,420,077	-		BBR_RS20475	0.40	+3.2
2,420,079	-		BBR_RS20475	0.40	+1.3
2,420,083	-		BBR_RS20475	0.41	+2.2
2,420,083	-		BBR_RS20475	0.41	+0.8
2,420,090	+		BBR_RS20475	0.42	+0.9
2,420,090	+		BBR_RS20475	0.42	+3.0
2,420,091	+		BBR_RS20475	0.42	+1.7
2,420,092	+		BBR_RS20475	0.43	-1.8
2,420,096	+		BBR_RS20475	0.43	-1.8
2,420,098	-		BBR_RS20475	0.44	+2.8
2,420,099	-		BBR_RS20475	0.44	+4.1
2,420,106	-		BBR_RS20475	0.45	-2.6
2,420,106	-		BBR_RS20475	0.45	+3.3
2,420,112	-		BBR_RS20475	0.46	-0.4
2,420,124	-		BBR_RS20475	0.49	+4.5
2,420,135	+		BBR_RS20475	0.51	+2.0
2,420,135	+		BBR_RS20475	0.51	-2.0
2,420,143	-		BBR_RS20475	0.52	+2.1
2,420,143	-		BBR_RS20475	0.52	+1.1
2,420,143	-		BBR_RS20475	0.52	+3.1
2,420,143	-		BBR_RS20475	0.52	+1.2
2,420,143	-		BBR_RS20475	0.52	+2.0
2,420,144	+		BBR_RS20475	0.52	+2.5
2,420,147	+		BBR_RS20475	0.53	-2.4
2,420,157	+		BBR_RS20475	0.55	+1.8
2,420,160	-		BBR_RS20475	0.55	+2.2
2,420,162	-		BBR_RS20475	0.56	+2.4
2,420,166	+		BBR_RS20475	0.56	+0.7
2,420,173	+		BBR_RS20475	0.58	+1.0
2,420,173	+		BBR_RS20475	0.58	-2.4
2,420,174	-		BBR_RS20475	0.58	-1.1
2,420,176	+		BBR_RS20475	0.58	+1.8
2,420,181	-		BBR_RS20475	0.59	+0.3
2,420,182	-		BBR_RS20475	0.59	-1.9
2,420,189	-		BBR_RS20475	0.61	+0.1
2,420,191	+		BBR_RS20475	0.61	+1.4
2,420,207	-		BBR_RS20475	0.64	+1.5
2,420,232	-		BBR_RS20475	0.69	+1.4
2,420,232	-		BBR_RS20475	0.69	+0.4
2,420,236	+		BBR_RS20475	0.69	-2.6
2,420,238	+		BBR_RS20475	0.70	+2.2
2,420,251	-		BBR_RS20475	0.72	-1.5
2,420,253	+		BBR_RS20475	0.73	+1.3
2,420,261	-		BBR_RS20475	0.74	+1.9
2,420,261	-		BBR_RS20475	0.74	+4.2
2,420,261	-		BBR_RS20475	0.74	-3.2
2,420,263	+		BBR_RS20475	0.74	-1.1
2,420,263	+		BBR_RS20475	0.74	+1.0
2,420,263	+		BBR_RS20475	0.74	-1.2
2,420,271	-		BBR_RS20475	0.76	-0.0
2,420,271	-		BBR_RS20475	0.76	-1.9
2,420,290	-		BBR_RS20475	0.80	+2.4
2,420,293	+		BBR_RS20475	0.80	+2.0
2,420,296	-		BBR_RS20475	0.81	+3.7
2,420,299	+		BBR_RS20475	0.81	+3.0
2,420,299	+		BBR_RS20475	0.81	+1.8
2,420,299	+		BBR_RS20475	0.81	+4.6
2,420,299	+		BBR_RS20475	0.81	+3.2
2,420,299	+		BBR_RS20475	0.81	+0.2
2,420,307	-		BBR_RS20475	0.83	-1.7
2,420,307	-		BBR_RS20475	0.83	-2.3
2,420,307	-		BBR_RS20475	0.83	+0.8
2,420,309	-		BBR_RS20475	0.83	+0.3
2,420,309	-		BBR_RS20475	0.83	+1.4
2,420,319	-		BBR_RS20475	0.85	-0.3
2,420,319	-		BBR_RS20475	0.85	-2.0
2,420,325	+		BBR_RS20475	0.86	+2.7
2,420,326	+		BBR_RS20475	0.86	+2.2
2,420,334	-		BBR_RS20475	0.88	-2.5
2,420,351	+				+1.3
2,420,355	-				+2.6
2,420,367	-				-1.9
2,420,369	+				+2.1
2,420,377	-				+2.3
2,420,377	-				-2.0
2,420,378	+				+1.2
2,420,378	+				+3.4
2,420,383	+				+1.9
2,420,383	+				+3.6
2,420,383	+				+2.1
2,420,383	+				+3.3
2,420,388	+				+4.2
2,420,388	+				+2.5
2,420,388	+				+1.7
2,420,390	+				+3.0
2,420,391	-				-2.6
2,420,393	+				+2.5
2,420,395	+				+1.5
2,420,396	-				-1.0
2,420,396	-				-2.6
2,420,396	-				-3.5
2,420,401	+				+2.3
2,420,405	+				-1.6
2,420,409	-				-0.1
2,420,414	+				+3.3
2,420,416	-				+1.1
2,420,422	-				+0.4
2,420,422	-				+1.2
2,420,427	-				-1.1
2,420,432	+				+2.6
2,420,433	+				-0.7
2,420,437	+				+1.9
2,420,439	+				+2.4
2,420,439	+				+0.2
2,420,441	-				+1.8
2,420,441	-				-2.0
2,420,447	-				+1.6
2,420,447	-				-0.8
2,420,457	+				+1.6
2,420,457	+				+3.4
2,420,465	-				-2.2
2,420,465	-				-1.8
2,420,467	+				+3.0
2,420,467	+				+1.7
2,420,467	+				+2.5
2,420,467	+				+3.3
2,420,467	+				+2.8
2,420,467	+				+2.2
2,420,467	+				+1.0
2,420,467	+				+2.2
2,420,470	-				-1.2
2,420,470	-				+1.0
2,420,475	-				+2.2
2,420,475	-				-1.5
2,420,475	-				-2.1
2,420,475	-				-1.9
2,420,477	-				+1.2
2,420,478	+				-1.5
2,420,486	+				+1.2
2,420,507	-				-0.7
2,420,507	-				-0.6
2,420,507	-				-0.3
2,420,518	-				+0.1
2,420,518	-				-1.9
2,420,518	-				+2.0
2,420,600	-				-1.3
2,420,634	-		BBR_RS20480	0.11	-2.7
2,421,470	-				-1.3
2,421,482	-				+0.8
2,421,497	-				-1.5
2,421,521	-				-2.2
2,421,551	-				+3.3
2,421,551	-				+0.7
2,421,551	-				+2.0
2,421,551	-				-1.7
2,421,551	-				+1.8
2,421,551	-				-1.6
2,421,551	-				+4.4
2,421,551	-				+1.6
2,421,551	-				+3.0
2,421,551	-				-0.6
2,421,551	-				+2.3
2,421,551	-				+2.2
2,421,572	-		BBR_RS21170	0.14	+0.7
2,421,577	-		BBR_RS21170	0.15	+0.9
2,421,577	-		BBR_RS21170	0.15	+1.5
2,421,585	-		BBR_RS21170	0.18	-2.3
2,421,587	-		BBR_RS21170	0.18	+2.0
2,421,587	-		BBR_RS21170	0.18	+2.2
2,421,587	-		BBR_RS21170	0.18	-1.7
2,421,587	-		BBR_RS21170	0.18	+1.0
2,421,595	-		BBR_RS21170	0.21	-0.6
2,421,595	-		BBR_RS21170	0.21	-1.3
2,421,630	-		BBR_RS21170	0.32	+2.4
2,421,644	-		BBR_RS21170	0.36	-2.3
2,421,644	-		BBR_RS21170	0.36	-3.3
2,421,660	-		BBR_RS21170	0.41	-1.3
2,421,660	-		BBR_RS21170	0.41	-1.6
2,421,660	-		BBR_RS21170	0.41	+2.3
2,421,660	-		BBR_RS21170	0.41	-2.2
2,421,693	-		BBR_RS21170	0.52	-1.9
2,421,699	-		BBR_RS21170	0.53	-1.8
2,421,699	-		BBR_RS21170	0.53	-1.9
2,421,699	-		BBR_RS21170	0.53	-2.3
2,421,699	-		BBR_RS21170	0.53	+1.5
2,421,699	-		BBR_RS21170	0.53	+1.8
2,421,715	-		BBR_RS21170	0.58	-1.7
2,421,715	-		BBR_RS21170	0.58	+0.9
2,421,715	-		BBR_RS21170	0.58	-1.1
2,421,715	-		BBR_RS21170	0.58	+1.3
2,421,746	-		BBR_RS21170	0.68	-1.9
2,421,760	-		BBR_RS21170	0.73	-2.7
2,421,767	-		BBR_RS21170	0.75	-0.2
2,421,796	-		BBR_RS21170	0.84	-2.1
2,421,806	-		BBR_RS21170	0.87	-1.3
2,421,807	-		BBR_RS21170	0.87	+2.6
2,421,813	-		BBR_RS21170	0.89	+0.6
2,421,825	-				-3.0
2,421,835	-				+0.5
2,421,835	-				+0.9
2,421,840	-				+2.9
2,421,840	-				-0.8
2,421,840	-				-0.5
2,421,844	-				+0.6
2,421,845	-				+0.1
2,422,192	-				+0.5
2,422,192	-				+0.8
2,422,201	-				-0.5
2,422,209	+				+1.0
2,422,244	+				-2.2
2,422,443	+				+0.3
2,422,443	+				-0.8
2,422,490	+				+1.9
2,422,522	-				+1.6
2,422,523	+				+0.3
2,422,523	+				+3.0