Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS18785

Experiment: CDM1 without Phenylalanine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	CDM1 without Phenylalanine
2,004,704	+				+0.6
2,004,704	+				+1.0
2,004,704	+				+2.3
2,004,704	+				+0.7
2,004,712	-				+1.3
2,004,712	-				-2.6
2,004,719	+				+2.3
2,004,720	+				-0.7
2,004,749	+		BBR_RS18775	0.12	-1.6
2,004,763	-		BBR_RS18775	0.13	+1.5
2,004,789	+		BBR_RS18775	0.17	-3.1
2,004,797	-		BBR_RS18775	0.18	-2.1
2,004,797	-		BBR_RS18775	0.18	+2.7
2,004,799	+		BBR_RS18775	0.18	-1.0
2,004,824	+		BBR_RS18775	0.21	-2.0
2,004,832	-		BBR_RS18775	0.22	-0.0
2,004,838	+		BBR_RS18775	0.23	-0.8
2,004,852	+		BBR_RS18775	0.25	+3.4
2,004,852	+		BBR_RS18775	0.25	-1.1
2,004,852	+		BBR_RS18775	0.25	-1.4
2,004,852	+		BBR_RS18775	0.25	+2.1
2,004,860	-		BBR_RS18775	0.26	+1.4
2,004,860	-		BBR_RS18775	0.26	+1.9
2,004,876	+		BBR_RS18775	0.28	+0.1
2,004,884	-		BBR_RS18775	0.29	+3.3
2,004,921	+		BBR_RS18775	0.33	-1.3
2,004,921	+		BBR_RS18775	0.33	-2.2
2,004,928	+		BBR_RS18775	0.34	+1.6
2,004,928	+		BBR_RS18775	0.34	-0.9
2,004,929	-		BBR_RS18775	0.34	+0.3
2,004,929	-		BBR_RS18775	0.34	+0.3
2,004,929	-		BBR_RS18775	0.34	+0.8
2,004,929	-		BBR_RS18775	0.34	+2.0
2,004,929	-		BBR_RS18775	0.34	+1.9
2,004,929	-		BBR_RS18775	0.34	-1.4
2,004,929	-		BBR_RS18775	0.34	-2.5
2,004,965	-		BBR_RS18775	0.39	-1.7
2,004,976	+		BBR_RS18775	0.40	-4.1
2,004,979	+		BBR_RS18775	0.40	-1.9
2,004,984	-		BBR_RS18775	0.41	+1.8
2,004,984	-		BBR_RS18775	0.41	+0.7
2,004,984	-		BBR_RS18775	0.41	+1.6
2,004,984	-		BBR_RS18775	0.41	-1.5
2,004,984	-		BBR_RS18775	0.41	+3.7
2,004,985	-		BBR_RS18775	0.41	+3.4
2,004,989	-		BBR_RS18775	0.42	-1.0
2,004,989	-		BBR_RS18775	0.42	+0.7
2,005,006	+		BBR_RS18775	0.44	-3.1
2,005,050	+		BBR_RS18775	0.49	+2.9
2,005,050	+		BBR_RS18775	0.49	+0.6
2,005,050	+		BBR_RS18775	0.49	-0.3
2,005,050	+		BBR_RS18775	0.49	+0.2
2,005,050	+		BBR_RS18775	0.49	+4.2
2,005,050	+		BBR_RS18775	0.49	-1.1
2,005,052	+		BBR_RS18775	0.50	-2.4
2,005,057	+		BBR_RS18775	0.50	+2.1
2,005,058	-		BBR_RS18775	0.50	+2.3
2,005,058	-		BBR_RS18775	0.50	-1.3
2,005,060	-		BBR_RS18775	0.51	+1.3
2,005,070	-		BBR_RS18775	0.52	+2.3
2,005,070	-		BBR_RS18775	0.52	-2.7
2,005,070	-		BBR_RS18775	0.52	+1.9
2,005,070	-		BBR_RS18775	0.52	+1.7
2,005,070	-		BBR_RS18775	0.52	+4.4
2,005,070	-		BBR_RS18775	0.52	+0.2
2,005,077	-		BBR_RS18775	0.53	+0.6
2,005,079	-		BBR_RS18775	0.53	-1.8
2,005,079	-		BBR_RS18775	0.53	-0.7
2,005,094	+		BBR_RS18775	0.55	+0.2
2,005,094	+		BBR_RS18775	0.55	-0.8
2,005,104	+		BBR_RS18775	0.56	+0.7
2,005,124	-		BBR_RS18775	0.59	+2.1
2,005,124	-		BBR_RS18775	0.59	+1.6
2,005,126	+		BBR_RS18775	0.59	-0.8
2,005,159	+		BBR_RS18775	0.63	+3.3
2,005,162	+		BBR_RS18775	0.63	+0.3
2,005,175	-		BBR_RS18775	0.65	-2.0
2,005,177	-		BBR_RS18775	0.65	+1.2
2,005,177	-		BBR_RS18775	0.65	+0.3
2,005,198	-		BBR_RS18775	0.68	+0.6
2,005,205	+		BBR_RS18775	0.69	+4.1
2,005,205	+		BBR_RS18775	0.69	+1.7
2,005,230	-		BBR_RS18775	0.72	+1.3
2,005,243	-		BBR_RS18775	0.73	+0.7
2,005,249	-		BBR_RS18775	0.74	-0.7
2,005,249	-		BBR_RS18775	0.74	+0.3
2,005,262	+		BBR_RS18775	0.76	-2.1
2,005,269	+		BBR_RS18775	0.77	-1.5
2,005,270	-		BBR_RS18775	0.77	+1.5
2,005,270	-		BBR_RS18775	0.77	+1.8
2,005,282	-		BBR_RS18775	0.78	-1.4
2,005,298	+		BBR_RS18775	0.80	+0.6
2,005,298	+		BBR_RS18775	0.80	+2.1
2,005,299	-		BBR_RS18775	0.80	+1.2
2,005,300	-		BBR_RS18775	0.81	+3.1
2,005,338	+		BBR_RS18775	0.85	+0.3
2,005,340	+		BBR_RS18775	0.86	+3.5
2,005,340	+		BBR_RS18775	0.86	+3.5
2,005,348	-		BBR_RS18775	0.87	-3.1
2,005,352	-		BBR_RS18775	0.87	+0.7
2,005,403	+				-1.9
2,005,403	+				+0.3
2,005,424	-				+2.4
2,005,435	+				-0.9
2,005,435	+				+0.8
2,005,653	-				-3.4
2,005,657	-				+0.2
2,005,657	-				+0.3
2,005,666	+				-1.7
2,005,666	+				+0.7
2,005,677	+				-0.2
2,005,677	+				-2.5
2,005,713	-				-1.6
2,005,713	-				+1.0
2,005,718	-				+2.5
2,005,731	+				-2.7
2,005,763	+		BBR_RS18785	0.12	-1.5
2,005,770	+		BBR_RS18785	0.13	-0.3
2,005,771	-		BBR_RS18785	0.13	+1.8
2,005,783	+		BBR_RS18785	0.14	+1.4
2,005,783	-		BBR_RS18785	0.14	-0.6
2,005,820	+		BBR_RS18785	0.19	-0.3
2,005,828	-		BBR_RS18785	0.20	-1.3
2,005,828	-		BBR_RS18785	0.20	+1.3
2,005,829	-		BBR_RS18785	0.20	+3.5
2,005,843	+		BBR_RS18785	0.22	-1.5
2,005,846	+		BBR_RS18785	0.22	+2.9
2,005,851	-		BBR_RS18785	0.23	+0.1
2,005,859	-		BBR_RS18785	0.24	+1.4
2,005,866	-		BBR_RS18785	0.25	-1.9
2,005,877	+		BBR_RS18785	0.26	+2.2
2,005,882	+		BBR_RS18785	0.27	+2.0
2,005,882	+		BBR_RS18785	0.27	-2.0
2,005,882	+		BBR_RS18785	0.27	+2.9
2,005,885	-		BBR_RS18785	0.27	+2.4
2,005,890	-		BBR_RS18785	0.28	-1.0
2,005,892	-		BBR_RS18785	0.28	+1.7
2,005,902	+		BBR_RS18785	0.29	+4.1
2,005,902	+		BBR_RS18785	0.29	-1.4
2,005,902	+		BBR_RS18785	0.29	-1.3
2,005,902	+		BBR_RS18785	0.29	-1.4
2,005,905	-		BBR_RS18785	0.30	-0.3
2,005,910	-		BBR_RS18785	0.30	-2.8
2,005,910	-		BBR_RS18785	0.30	+0.7
2,005,910	-		BBR_RS18785	0.30	+1.9
2,005,910	-		BBR_RS18785	0.30	+2.2
2,005,910	-		BBR_RS18785	0.30	+1.3
2,005,910	-		BBR_RS18785	0.30	+1.2
2,005,946	+		BBR_RS18785	0.35	-1.7
2,005,946	+		BBR_RS18785	0.35	-1.9
2,005,956	+		BBR_RS18785	0.36	-2.2
2,005,956	+		BBR_RS18785	0.36	+1.9
2,005,956	+		BBR_RS18785	0.36	+2.8
2,005,956	+		BBR_RS18785	0.36	-1.4
2,005,956	+		BBR_RS18785	0.36	+1.7
2,005,956	+		BBR_RS18785	0.36	+1.3
2,005,964	-		BBR_RS18785	0.37	-1.5
2,005,964	-		BBR_RS18785	0.37	+2.5
2,005,964	-		BBR_RS18785	0.37	-0.1
2,005,964	-		BBR_RS18785	0.37	+2.5
2,005,964	-		BBR_RS18785	0.37	-0.8
2,005,969	+		BBR_RS18785	0.38	+1.4
2,005,969	+		BBR_RS18785	0.38	+0.4
2,005,969	+		BBR_RS18785	0.38	+0.3
2,005,969	+		BBR_RS18785	0.38	+1.0
2,005,977	-		BBR_RS18785	0.39	+2.2
2,005,977	-		BBR_RS18785	0.39	+0.5
2,005,977	-		BBR_RS18785	0.39	+3.5
2,005,977	-		BBR_RS18785	0.39	+2.4
2,005,977	-		BBR_RS18785	0.39	-1.9
2,005,977	-		BBR_RS18785	0.39	+3.1
2,005,977	-		BBR_RS18785	0.39	+1.1
2,005,977	-		BBR_RS18785	0.39	-1.9
2,005,977	-		BBR_RS18785	0.39	-1.1
2,005,977	-		BBR_RS18785	0.39	+1.8
2,005,977	-		BBR_RS18785	0.39	+0.6
2,005,979	+		BBR_RS18785	0.39	-0.3
2,005,981	+		BBR_RS18785	0.39	-0.4
2,005,981	+		BBR_RS18785	0.39	-0.9
2,005,981	+		BBR_RS18785	0.39	+0.9
2,005,981	+		BBR_RS18785	0.39	-2.0
2,005,981	+		BBR_RS18785	0.39	-0.6
2,005,987	-		BBR_RS18785	0.40	+1.6
2,005,987	-		BBR_RS18785	0.40	+0.1
2,005,987	-		BBR_RS18785	0.40	+1.6
2,005,989	-		BBR_RS18785	0.40	+1.7
2,005,989	-		BBR_RS18785	0.40	+0.4
2,005,989	-		BBR_RS18785	0.40	+1.4
2,005,994	-		BBR_RS18785	0.41	+0.6
2,005,999	-		BBR_RS18785	0.41	+1.1
2,005,999	-		BBR_RS18785	0.41	-1.0
2,006,009	-		BBR_RS18785	0.43	+3.2
2,006,034	-		BBR_RS18785	0.46	+2.7
2,006,038	+		BBR_RS18785	0.46	-1.5
2,006,038	+		BBR_RS18785	0.46	+1.7
2,006,038	+		BBR_RS18785	0.46	-0.6
2,006,038	+		BBR_RS18785	0.46	+0.9
2,006,038	+		BBR_RS18785	0.46	+1.4
2,006,046	-		BBR_RS18785	0.47	+3.8
2,006,046	-		BBR_RS18785	0.47	+3.2
2,006,046	-		BBR_RS18785	0.47	-0.7
2,006,070	+		BBR_RS18785	0.50	+1.7
2,006,070	+		BBR_RS18785	0.50	-1.6
2,006,078	-		BBR_RS18785	0.51	-0.4
2,006,081	+		BBR_RS18785	0.52	+2.1
2,006,088	-		BBR_RS18785	0.52	+0.2
2,006,097	-		BBR_RS18785	0.54	+0.4
2,006,118	+		BBR_RS18785	0.56	+0.8
2,006,152	+		BBR_RS18785	0.60	+1.3
2,006,155	-		BBR_RS18785	0.61	-3.0
2,006,155	-		BBR_RS18785	0.61	+2.2
2,006,155	-		BBR_RS18785	0.61	+2.2
2,006,160	-		BBR_RS18785	0.61	-0.3
2,006,165	-		BBR_RS18785	0.62	+0.4
2,006,175	-		BBR_RS18785	0.63	+2.2
2,006,175	-		BBR_RS18785	0.63	-1.6
2,006,186	-		BBR_RS18785	0.65	+1.6
2,006,200	+		BBR_RS18785	0.66	+0.8
2,006,219	+		BBR_RS18785	0.69	-1.8
2,006,242	+		BBR_RS18785	0.72	+0.2
2,006,250	+		BBR_RS18785	0.73	+3.4
2,006,275	+		BBR_RS18785	0.76	-1.8
2,006,277	-		BBR_RS18785	0.76	-3.3
2,006,326	+		BBR_RS18785	0.82	-1.5
2,006,379	+		BBR_RS18785	0.89	+2.5
2,006,389	-				+2.8
2,006,396	+				+3.7
2,006,404	-				-0.6
2,006,404	-				-0.0
2,006,413	-				+1.4
2,006,443	-				-1.9
2,006,482	-				-1.6
2,006,482	-				+1.6
2,006,508	+				-2.7
2,006,523	+				+1.3
2,006,531	+				+0.6
2,006,537	-				+0.6
2,006,580	+				+1.5
2,006,580	+				+1.4
2,006,580	+				+0.2
2,006,588	-				+1.3
2,006,594	+				-0.5
2,006,594	-				+2.5
2,006,602	-				-0.0
2,006,602	-				+4.0
2,006,610	-				-1.4
2,006,620	-				+3.7
2,006,635	-				+2.3
2,006,642	+				+0.8
2,006,650	-				+2.9
2,006,655	-				-2.8
2,006,655	-				+0.6
2,006,676	-				-1.8
2,006,678	-				+1.7
2,006,678	-				+0.1
2,006,693	-				+0.5
2,006,728	+				-0.3
2,006,762	+				+1.9
2,006,770	-				+0.5
2,006,775	-				+4.5
2,006,778	+				-2.5
2,006,791	+				-2.7
2,006,791	+				-2.4
2,006,794	-				+1.9
2,006,794	-				-0.6
2,006,805	-				+2.8
2,006,806	-				+2.8
2,006,876	-		BBR_RS18790	0.12	-0.9
2,006,876	-		BBR_RS18790	0.12	+2.6
2,006,881	+		BBR_RS18790	0.12	+3.0
2,006,881	+		BBR_RS18790	0.12	-1.9
2,006,886	-		BBR_RS18790	0.12	+1.5
2,006,889	-		BBR_RS18790	0.13	+3.7
2,006,923	+		BBR_RS18790	0.14	+1.1
2,006,934	-		BBR_RS18790	0.15	+1.4
2,006,943	-		BBR_RS18790	0.15	+2.7
2,006,961	+		BBR_RS18790	0.16	-1.0
2,006,964	+		BBR_RS18790	0.16	+0.8
2,006,973	+		BBR_RS18790	0.16	-2.8
2,007,010	+		BBR_RS18790	0.18	-0.6
2,007,012	+		BBR_RS18790	0.18	-0.9
2,007,031	-		BBR_RS18790	0.19	+1.4
2,007,042	+		BBR_RS18790	0.20	-2.5
2,007,042	+		BBR_RS18790	0.20	-1.6
2,007,050	-		BBR_RS18790	0.20	+1.7
2,007,050	-		BBR_RS18790	0.20	+1.6
2,007,050	-		BBR_RS18790	0.20	-2.0
2,007,053	+		BBR_RS18790	0.20	+2.3
2,007,068	+		BBR_RS18790	0.21	+2.2
2,007,068	+		BBR_RS18790	0.21	+1.2
2,007,088	+		BBR_RS18790	0.22	+0.4
2,007,113	+		BBR_RS18790	0.23	-0.9
2,007,113	-		BBR_RS18790	0.23	-0.5
2,007,151	+		BBR_RS18790	0.25	-1.7
2,007,151	+		BBR_RS18790	0.25	+1.1
2,007,157	-		BBR_RS18790	0.25	-2.6
2,007,157	-		BBR_RS18790	0.25	+2.0
2,007,157	-		BBR_RS18790	0.25	+0.6
2,007,157	-		BBR_RS18790	0.25	+0.0
2,007,164	-		BBR_RS18790	0.25	-0.7
2,007,174	-		BBR_RS18790	0.26	-1.3
2,007,186	-		BBR_RS18790	0.26	+2.1
2,007,208	-		BBR_RS18790	0.27	-0.9
2,007,209	+		BBR_RS18790	0.27	-1.6
2,007,217	-		BBR_RS18790	0.28	+3.6
2,007,217	-		BBR_RS18790	0.28	-0.6
2,007,219	+		BBR_RS18790	0.28	-1.4
2,007,227	-		BBR_RS18790	0.28	-1.7
2,007,248	+		BBR_RS18790	0.29	-0.7
2,007,257	-		BBR_RS18790	0.29	-2.1
2,007,257	-		BBR_RS18790	0.29	-2.3
2,007,274	+		BBR_RS18790	0.30	+0.7
2,007,282	-		BBR_RS18790	0.31	-1.3
2,007,293	-		BBR_RS18790	0.31	+3.3
2,007,293	-		BBR_RS18790	0.31	-0.5
2,007,302	-		BBR_RS18790	0.32	+0.5
2,007,304	+		BBR_RS18790	0.32	+1.5
2,007,312	-		BBR_RS18790	0.32	+1.6
2,007,327	+		BBR_RS18790	0.33	-0.5
2,007,327	+		BBR_RS18790	0.33	+2.5
2,007,334	+		BBR_RS18790	0.33	+0.2
2,007,335	-		BBR_RS18790	0.33	+0.8
2,007,382	-		BBR_RS18790	0.35	-2.3
2,007,402	+		BBR_RS18790	0.36	+1.6
2,007,402	+		BBR_RS18790	0.36	+3.7
2,007,403	-		BBR_RS18790	0.36	-1.8
2,007,403	-		BBR_RS18790	0.36	+2.2
2,007,407	+		BBR_RS18790	0.36	-1.3
2,007,417	+		BBR_RS18790	0.37	+1.5
2,007,417	+		BBR_RS18790	0.37	-0.9
2,007,417	+		BBR_RS18790	0.37	+0.1
2,007,417	+		BBR_RS18790	0.37	+4.0
2,007,417	+		BBR_RS18790	0.37	+2.0
2,007,417	+		BBR_RS18790	0.37	+0.5
2,007,417	+		BBR_RS18790	0.37	+3.2
2,007,417	+		BBR_RS18790	0.37	+0.0
2,007,417	+		BBR_RS18790	0.37	+1.7
2,007,417	+		BBR_RS18790	0.37	+0.9
2,007,417	+		BBR_RS18790	0.37	-1.0
2,007,419	+		BBR_RS18790	0.37	-1.9
2,007,419	+		BBR_RS18790	0.37	-1.8
2,007,425	-		BBR_RS18790	0.37	+3.6
2,007,425	-		BBR_RS18790	0.37	+2.4
2,007,425	-		BBR_RS18790	0.37	+0.9
2,007,425	-		BBR_RS18790	0.37	-3.3
2,007,425	-		BBR_RS18790	0.37	+3.6
2,007,427	-		BBR_RS18790	0.37	-0.7
2,007,428	-		BBR_RS18790	0.37	+0.3
2,007,429	-		BBR_RS18790	0.37	-2.8
2,007,462	+		BBR_RS18790	0.39	-1.2
2,007,468	-		BBR_RS18790	0.39	-0.8