Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS18770

Experiment: CDM1 without Phenylalanine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	CDM1 without Phenylalanine
2,003,691	-				+2.4
2,003,718	-				+1.2
2,003,736	-				+2.2
2,003,754	+				+1.2
2,003,754	+				+1.1
2,003,833	-				+2.1
2,003,873	+				+0.7
2,003,873	+				+1.7
2,003,875	+				+1.6
2,003,914	+				-1.2
2,003,919	+				-0.9
2,003,927	-				+1.6
2,003,949	-		BBR_RS18770	0.11	+0.4
2,003,949	-		BBR_RS18770	0.11	+1.8
2,003,949	-		BBR_RS18770	0.11	-0.8
2,003,956	+		BBR_RS18770	0.12	-2.5
2,003,968	+		BBR_RS18770	0.14	+2.2
2,003,976	-		BBR_RS18770	0.15	+1.5
2,003,978	+		BBR_RS18770	0.15	+2.0
2,003,997	-		BBR_RS18770	0.18	+1.5
2,003,997	-		BBR_RS18770	0.18	+3.6
2,003,999	+		BBR_RS18770	0.18	+1.6
2,003,999	+		BBR_RS18770	0.18	+0.2
2,003,999	+		BBR_RS18770	0.18	+0.8
2,004,002	-		BBR_RS18770	0.18	-0.9
2,004,021	-		BBR_RS18770	0.21	+1.0
2,004,033	+		BBR_RS18770	0.22	+1.1
2,004,034	+		BBR_RS18770	0.23	+1.3
2,004,034	+		BBR_RS18770	0.23	+3.8
2,004,034	+		BBR_RS18770	0.23	-0.7
2,004,041	-		BBR_RS18770	0.24	+0.6
2,004,042	-		BBR_RS18770	0.24	-2.8
2,004,042	-		BBR_RS18770	0.24	+1.5
2,004,042	-		BBR_RS18770	0.24	+2.0
2,004,076	+		BBR_RS18770	0.28	+1.7
2,004,100	-		BBR_RS18770	0.32	+2.7
2,004,166	+		BBR_RS18770	0.41	+1.1
2,004,166	+		BBR_RS18770	0.41	+1.2
2,004,166	+		BBR_RS18770	0.41	+3.0
2,004,166	+		BBR_RS18770	0.41	+3.0
2,004,166	+		BBR_RS18770	0.41	+3.0
2,004,171	+		BBR_RS18770	0.41	+1.0
2,004,171	+		BBR_RS18770	0.41	+2.5
2,004,174	-		BBR_RS18770	0.42	-1.1
2,004,174	-		BBR_RS18770	0.42	+1.2
2,004,174	-		BBR_RS18770	0.42	+3.0
2,004,174	-		BBR_RS18770	0.42	+0.3
2,004,181	+		BBR_RS18770	0.43	+1.9
2,004,189	-		BBR_RS18770	0.44	-0.5
2,004,224	+		BBR_RS18770	0.49	+1.4
2,004,224	+		BBR_RS18770	0.49	-1.1
2,004,226	+		BBR_RS18770	0.49	-1.4
2,004,232	-		BBR_RS18770	0.50	+0.9
2,004,247	+		BBR_RS18770	0.52	+2.0
2,004,249	+		BBR_RS18770	0.52	+1.3
2,004,249	+		BBR_RS18770	0.52	+1.7
2,004,249	+		BBR_RS18770	0.52	+3.2
2,004,249	+		BBR_RS18770	0.52	+1.1
2,004,257	-		BBR_RS18770	0.53	+1.3
2,004,257	-		BBR_RS18770	0.53	+3.1
2,004,257	-		BBR_RS18770	0.53	-1.9
2,004,257	-		BBR_RS18770	0.53	-2.0
2,004,257	-		BBR_RS18770	0.53	+2.6
2,004,257	-		BBR_RS18770	0.53	+1.7
2,004,257	-		BBR_RS18770	0.53	+3.3
2,004,281	-		BBR_RS18770	0.57	+0.5
2,004,292	+		BBR_RS18770	0.58	-2.7
2,004,332	+		BBR_RS18770	0.64	+3.2
2,004,332	+		BBR_RS18770	0.64	-1.8
2,004,332	+		BBR_RS18770	0.64	+1.0
2,004,337	+		BBR_RS18770	0.64	+1.5
2,004,340	-		BBR_RS18770	0.65	+1.7
2,004,340	-		BBR_RS18770	0.65	+2.4
2,004,340	-		BBR_RS18770	0.65	+1.4
2,004,340	-		BBR_RS18770	0.65	+1.9
2,004,351	+		BBR_RS18770	0.66	+0.5
2,004,351	+		BBR_RS18770	0.66	+3.2
2,004,359	-		BBR_RS18770	0.67	+2.3
2,004,377	-		BBR_RS18770	0.70	+3.5
2,004,389	-		BBR_RS18770	0.71	+2.5
2,004,389	-		BBR_RS18770	0.71	+2.4
2,004,391	+		BBR_RS18770	0.72	+2.8
2,004,414	+		BBR_RS18770	0.75	+1.3
2,004,426	-		BBR_RS18770	0.76	+3.3
2,004,445	+		BBR_RS18770	0.79	+1.3
2,004,460	+		BBR_RS18770	0.81	+2.3
2,004,470	-		BBR_RS18770	0.82	-0.4
2,004,470	-		BBR_RS18770	0.82	+2.9
2,004,500	+		BBR_RS18770	0.87	-0.7
2,004,514	+		BBR_RS18770	0.88	+1.9
2,004,514	-		BBR_RS18770	0.88	+1.6
2,004,514	-		BBR_RS18770	0.88	+2.5
2,004,514	-		BBR_RS18770	0.88	+1.3
2,004,529	+				+1.1
2,004,538	+				+1.4
2,004,546	-				+1.2
2,004,577	-				-0.4
2,004,577	-				+1.9
2,004,597	+				+3.0
2,004,599	+				+1.9
2,004,605	-				+0.6
2,004,606	-				-3.3
2,004,607	-				+2.3
2,004,653	-				-2.5
2,004,704	+				+0.6
2,004,704	+				+1.0
2,004,704	+				+2.3
2,004,704	+				+0.7
2,004,712	-				+1.3
2,004,712	-				-2.6
2,004,719	+				+2.3
2,004,720	+				-0.7
2,004,749	+		BBR_RS18775	0.12	-1.6
2,004,763	-		BBR_RS18775	0.13	+1.5
2,004,789	+		BBR_RS18775	0.17	-3.1
2,004,797	-		BBR_RS18775	0.18	-2.1
2,004,797	-		BBR_RS18775	0.18	+2.7
2,004,799	+		BBR_RS18775	0.18	-1.0
2,004,824	+		BBR_RS18775	0.21	-2.0
2,004,832	-		BBR_RS18775	0.22	-0.0
2,004,838	+		BBR_RS18775	0.23	-0.8
2,004,852	+		BBR_RS18775	0.25	+3.4
2,004,852	+		BBR_RS18775	0.25	-1.1
2,004,852	+		BBR_RS18775	0.25	-1.4
2,004,852	+		BBR_RS18775	0.25	+2.1
2,004,860	-		BBR_RS18775	0.26	+1.4
2,004,860	-		BBR_RS18775	0.26	+1.9
2,004,876	+		BBR_RS18775	0.28	+0.1
2,004,884	-		BBR_RS18775	0.29	+3.3
2,004,921	+		BBR_RS18775	0.33	-1.3
2,004,921	+		BBR_RS18775	0.33	-2.2
2,004,928	+		BBR_RS18775	0.34	+1.6
2,004,928	+		BBR_RS18775	0.34	-0.9
2,004,929	-		BBR_RS18775	0.34	+0.3
2,004,929	-		BBR_RS18775	0.34	+0.3
2,004,929	-		BBR_RS18775	0.34	+0.8
2,004,929	-		BBR_RS18775	0.34	+2.0
2,004,929	-		BBR_RS18775	0.34	+1.9
2,004,929	-		BBR_RS18775	0.34	-1.4
2,004,929	-		BBR_RS18775	0.34	-2.5
2,004,965	-		BBR_RS18775	0.39	-1.7
2,004,976	+		BBR_RS18775	0.40	-4.1
2,004,979	+		BBR_RS18775	0.40	-1.9
2,004,984	-		BBR_RS18775	0.41	+1.8
2,004,984	-		BBR_RS18775	0.41	+0.7
2,004,984	-		BBR_RS18775	0.41	+1.6
2,004,984	-		BBR_RS18775	0.41	-1.5
2,004,984	-		BBR_RS18775	0.41	+3.7
2,004,985	-		BBR_RS18775	0.41	+3.4
2,004,989	-		BBR_RS18775	0.42	-1.0
2,004,989	-		BBR_RS18775	0.42	+0.7
2,005,006	+		BBR_RS18775	0.44	-3.1
2,005,050	+		BBR_RS18775	0.49	+2.9
2,005,050	+		BBR_RS18775	0.49	+0.6
2,005,050	+		BBR_RS18775	0.49	-0.3
2,005,050	+		BBR_RS18775	0.49	+0.2
2,005,050	+		BBR_RS18775	0.49	+4.2
2,005,050	+		BBR_RS18775	0.49	-1.1
2,005,052	+		BBR_RS18775	0.50	-2.4
2,005,057	+		BBR_RS18775	0.50	+2.1
2,005,058	-		BBR_RS18775	0.50	+2.3
2,005,058	-		BBR_RS18775	0.50	-1.3
2,005,060	-		BBR_RS18775	0.51	+1.3
2,005,070	-		BBR_RS18775	0.52	+2.3
2,005,070	-		BBR_RS18775	0.52	-2.7
2,005,070	-		BBR_RS18775	0.52	+1.9
2,005,070	-		BBR_RS18775	0.52	+1.7
2,005,070	-		BBR_RS18775	0.52	+4.4
2,005,070	-		BBR_RS18775	0.52	+0.2
2,005,077	-		BBR_RS18775	0.53	+0.6
2,005,079	-		BBR_RS18775	0.53	-1.8
2,005,079	-		BBR_RS18775	0.53	-0.7
2,005,094	+		BBR_RS18775	0.55	+0.2
2,005,094	+		BBR_RS18775	0.55	-0.8
2,005,104	+		BBR_RS18775	0.56	+0.7
2,005,124	-		BBR_RS18775	0.59	+2.1
2,005,124	-		BBR_RS18775	0.59	+1.6
2,005,126	+		BBR_RS18775	0.59	-0.8
2,005,159	+		BBR_RS18775	0.63	+3.3
2,005,162	+		BBR_RS18775	0.63	+0.3
2,005,175	-		BBR_RS18775	0.65	-2.0
2,005,177	-		BBR_RS18775	0.65	+1.2
2,005,177	-		BBR_RS18775	0.65	+0.3
2,005,198	-		BBR_RS18775	0.68	+0.6
2,005,205	+		BBR_RS18775	0.69	+4.1
2,005,205	+		BBR_RS18775	0.69	+1.7
2,005,230	-		BBR_RS18775	0.72	+1.3
2,005,243	-		BBR_RS18775	0.73	+0.7
2,005,249	-		BBR_RS18775	0.74	-0.7
2,005,249	-		BBR_RS18775	0.74	+0.3
2,005,262	+		BBR_RS18775	0.76	-2.1
2,005,269	+		BBR_RS18775	0.77	-1.5
2,005,270	-		BBR_RS18775	0.77	+1.5
2,005,270	-		BBR_RS18775	0.77	+1.8
2,005,282	-		BBR_RS18775	0.78	-1.4
2,005,298	+		BBR_RS18775	0.80	+0.6
2,005,298	+		BBR_RS18775	0.80	+2.1
2,005,299	-		BBR_RS18775	0.80	+1.2
2,005,300	-		BBR_RS18775	0.81	+3.1
2,005,338	+		BBR_RS18775	0.85	+0.3
2,005,340	+		BBR_RS18775	0.86	+3.5
2,005,340	+		BBR_RS18775	0.86	+3.5
2,005,348	-		BBR_RS18775	0.87	-3.1
2,005,352	-		BBR_RS18775	0.87	+0.7
2,005,403	+				-1.9
2,005,403	+				+0.3
2,005,424	-				+2.4
2,005,435	+				-0.9
2,005,435	+				+0.8