Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS17810

Experiment: CDM1 without Phenylalanine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	CDM1 without Phenylalanine
1,775,304	+		BBR_RS17805	0.19	+3.0
1,775,327	+		BBR_RS17805	0.21	-2.1
1,775,327	+		BBR_RS17805	0.21	+2.1
1,775,351	-		BBR_RS17805	0.23	+1.6
1,775,368	+		BBR_RS17805	0.24	-1.9
1,775,377	+		BBR_RS17805	0.25	+1.3
1,775,395	+		BBR_RS17805	0.27	+0.3
1,775,421	+		BBR_RS17805	0.29	-0.7
1,775,421	+		BBR_RS17805	0.29	+1.4
1,775,438	+		BBR_RS17805	0.30	-0.9
1,775,446	-		BBR_RS17805	0.31	-2.2
1,775,448	-		BBR_RS17805	0.31	+1.0
1,775,448	-		BBR_RS17805	0.31	+1.8
1,775,475	+		BBR_RS17805	0.33	+0.2
1,775,480	+		BBR_RS17805	0.34	+0.3
1,775,483	-		BBR_RS17805	0.34	+0.5
1,775,488	-		BBR_RS17805	0.34	-1.7
1,775,488	-		BBR_RS17805	0.34	-1.7
1,775,488	-		BBR_RS17805	0.34	+0.9
1,775,493	-		BBR_RS17805	0.35	-1.5
1,775,498	-		BBR_RS17805	0.35	+0.4
1,775,518	-		BBR_RS17805	0.37	-2.0
1,775,523	-		BBR_RS17805	0.37	-2.0
1,775,528	-		BBR_RS17805	0.38	+1.5
1,775,531	-		BBR_RS17805	0.38	+0.7
1,775,550	-		BBR_RS17805	0.39	-1.0
1,775,578	-		BBR_RS17805	0.42	-0.4
1,775,606	-		BBR_RS17805	0.44	-0.1
1,775,624	+		BBR_RS17805	0.46	+1.4
1,775,694	-		BBR_RS17805	0.51	-0.3
1,775,709	-		BBR_RS17805	0.53	+0.9
1,775,727	-		BBR_RS17805	0.54	+1.8
1,775,731	-		BBR_RS17805	0.54	-1.4
1,775,735	-		BBR_RS17805	0.55	-1.7
1,775,778	-		BBR_RS17805	0.58	+1.3
1,775,783	-		BBR_RS17805	0.59	-0.8
1,775,800	-		BBR_RS17805	0.60	+2.2
1,775,863	+		BBR_RS17805	0.65	-0.2
1,775,863	-		BBR_RS17805	0.65	-1.8
1,775,934	+		BBR_RS17805	0.71	+0.4
1,775,942	-		BBR_RS17805	0.72	-1.5
1,775,947	-		BBR_RS17805	0.72	+0.0
1,775,967	+		BBR_RS17805	0.74	+0.9
1,775,992	+		BBR_RS17805	0.76	+0.1
1,776,009	-		BBR_RS17805	0.78	-0.0
1,776,028	+		BBR_RS17805	0.79	+3.0
1,776,043	+		BBR_RS17805	0.80	+0.9
1,776,074	+		BBR_RS17805	0.83	-1.9
1,776,082	-		BBR_RS17805	0.84	+0.6
1,776,082	-		BBR_RS17805	0.84	-1.4
1,776,103	-		BBR_RS17805	0.85	-0.6
1,776,105	+		BBR_RS17805	0.85	+0.9
1,776,105	+		BBR_RS17805	0.85	+1.5
1,776,113	-		BBR_RS17805	0.86	-1.8
1,776,113	-		BBR_RS17805	0.86	+1.4
1,776,113	-		BBR_RS17805	0.86	+1.4
1,776,113	-		BBR_RS17805	0.86	-3.6
1,776,113	-		BBR_RS17805	0.86	-1.7
1,776,133	-		BBR_RS17805	0.88	+0.7
1,776,169	-				-2.1
1,776,169	-				-1.3
1,776,224	-				-1.8
1,776,259	-				-0.6
1,776,280	+				+1.8
1,776,280	+				-1.4
1,776,281	-				+0.0
1,776,281	-				-0.3
1,776,286	+				-2.6
1,776,304	-				-1.0
1,776,304	-				-2.4
1,776,361	+		BBR_RS17810	0.12	-2.3
1,776,369	-		BBR_RS17810	0.14	-0.3
1,776,426	-		BBR_RS17810	0.22	-0.9
1,776,443	+		BBR_RS17810	0.24	+0.0
1,776,463	-		BBR_RS17810	0.27	-0.2
1,776,463	-		BBR_RS17810	0.27	+0.2
1,776,465	+		BBR_RS17810	0.28	+1.7
1,776,476	-		BBR_RS17810	0.29	-0.1
1,776,492	-		BBR_RS17810	0.31	-0.6
1,776,492	-		BBR_RS17810	0.31	+2.7
1,776,502	+		BBR_RS17810	0.33	+0.6
1,776,576	-		BBR_RS17810	0.44	+0.9
1,776,583	-		BBR_RS17810	0.45	+0.3
1,776,583	-		BBR_RS17810	0.45	+1.0
1,776,699	-		BBR_RS17810	0.62	+1.3
1,776,729	+		BBR_RS17810	0.66	-2.1
1,776,743	-		BBR_RS17810	0.68	-1.7
1,776,747	-		BBR_RS17810	0.69	-1.6
1,776,749	+		BBR_RS17810	0.69	+1.2
1,776,773	+		BBR_RS17810	0.72	+0.3
1,776,814	-		BBR_RS17810	0.78	-2.5
1,776,912	-				-3.3
1,776,917	+				+2.3
1,776,923	-				-2.4
1,776,925	-				+1.8
1,776,972	-				-2.7
1,776,973	-				+2.1
1,777,079	-				+1.8
1,777,082	+				+0.9
1,777,169	-				+3.1
1,777,206	+		BBR_RS17815	0.12	-2.4
1,777,211	+		BBR_RS17815	0.13	+0.7
1,777,232	+		BBR_RS17815	0.15	-1.6
1,777,258	-		BBR_RS17815	0.17	+0.1
1,777,258	-		BBR_RS17815	0.17	-1.5
1,777,275	+		BBR_RS17815	0.19	-1.1
1,777,296	+		BBR_RS17815	0.21	-2.6
1,777,296	+		BBR_RS17815	0.21	-2.2
1,777,304	-		BBR_RS17815	0.22	-0.8
1,777,311	+		BBR_RS17815	0.23	-1.3
1,777,373	+		BBR_RS17815	0.29	+0.8
1,777,380	+		BBR_RS17815	0.30	+1.3
1,777,435	+		BBR_RS17815	0.35	-2.8
1,777,455	+		BBR_RS17815	0.38	-1.7
1,777,502	-		BBR_RS17815	0.42	-0.1
1,777,502	-		BBR_RS17815	0.42	-0.7
1,777,516	-		BBR_RS17815	0.44	+1.9
1,777,534	-		BBR_RS17815	0.46	-1.8
1,777,550	-		BBR_RS17815	0.47	-1.5
1,777,629	-		BBR_RS17815	0.55	+2.2
1,777,633	+		BBR_RS17815	0.56	+0.4
1,777,633	+		BBR_RS17815	0.56	-1.0
1,777,633	+		BBR_RS17815	0.56	-1.5
1,777,633	+		BBR_RS17815	0.56	-1.8
1,777,641	-		BBR_RS17815	0.56	+0.7
1,777,733	-		BBR_RS17815	0.66	-0.8
1,777,733	-		BBR_RS17815	0.66	+0.8
1,777,733	-		BBR_RS17815	0.66	-2.2
1,777,767	-		BBR_RS17815	0.69	+1.1
1,777,767	-		BBR_RS17815	0.69	+1.1
1,777,792	-		BBR_RS17815	0.72	-2.9
1,777,793	+		BBR_RS17815	0.72	-1.8
1,777,801	-		BBR_RS17815	0.73	-1.4
1,777,801	-		BBR_RS17815	0.73	-1.2
1,777,801	-		BBR_RS17815	0.73	+4.3
1,777,803	+		BBR_RS17815	0.73	+1.4
1,777,803	+		BBR_RS17815	0.73	-2.1
1,777,803	+		BBR_RS17815	0.73	+1.7
1,777,803	+		BBR_RS17815	0.73	+1.8
1,777,803	+		BBR_RS17815	0.73	+2.1
1,777,803	+		BBR_RS17815	0.73	+1.3
1,777,803	+		BBR_RS17815	0.73	+1.7
1,777,806	-		BBR_RS17815	0.73	+4.4
1,777,811	-		BBR_RS17815	0.74	-2.5
1,777,811	-		BBR_RS17815	0.74	-0.2
1,777,811	-		BBR_RS17815	0.74	-0.3
1,777,811	-		BBR_RS17815	0.74	+2.4
1,777,811	-		BBR_RS17815	0.74	-2.3
1,777,811	-		BBR_RS17815	0.74	-1.1
1,777,811	-		BBR_RS17815	0.74	+1.8
1,777,811	-		BBR_RS17815	0.74	+1.9
1,777,827	-		BBR_RS17815	0.75	-1.6
1,777,832	-		BBR_RS17815	0.76	+1.6
1,777,837	-		BBR_RS17815	0.76	+1.9
1,777,839	+		BBR_RS17815	0.77	-1.3
1,777,839	+		BBR_RS17815	0.77	+0.1
1,777,842	-		BBR_RS17815	0.77	-1.3
1,777,871	-		BBR_RS17815	0.80	-2.6
1,777,905	-		BBR_RS17815	0.83	+0.1
1,777,943	+		BBR_RS17815	0.87	-0.5