Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS17210

Experiment: CDM1 without Phenylalanine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	CDM1 without Phenylalanine
1,638,526	-		BBR_RS17205	0.67	-1.2
1,638,684	-		BBR_RS17205	0.72	-0.1
1,638,704	+		BBR_RS17205	0.73	-0.2
1,638,704	+		BBR_RS17205	0.73	-1.2
1,638,704	+		BBR_RS17205	0.73	+2.6
1,638,720	-		BBR_RS17205	0.74	+2.1
1,638,749	+		BBR_RS17205	0.75	+2.6
1,638,749	+		BBR_RS17205	0.75	+0.6
1,638,749	+		BBR_RS17205	0.75	+0.2
1,638,757	-		BBR_RS17205	0.75	+1.1
1,638,757	-		BBR_RS17205	0.75	+0.1
1,638,779	+		BBR_RS17205	0.76	+1.9
1,638,794	+		BBR_RS17205	0.76	+2.5
1,638,794	+		BBR_RS17205	0.76	+0.9
1,638,805	-		BBR_RS17205	0.77	+0.9
1,638,806	+		BBR_RS17205	0.77	+1.9
1,638,806	+		BBR_RS17205	0.77	+0.1
1,638,806	+		BBR_RS17205	0.77	+2.5
1,638,806	+		BBR_RS17205	0.77	+3.5
1,638,806	+		BBR_RS17205	0.77	+1.5
1,638,806	+		BBR_RS17205	0.77	+1.9
1,638,806	+		BBR_RS17205	0.77	+1.3
1,638,806	+		BBR_RS17205	0.77	+2.6
1,638,814	+		BBR_RS17205	0.77	+3.2
1,638,814	+		BBR_RS17205	0.77	+1.1
1,638,814	-		BBR_RS17205	0.77	+1.8
1,638,814	-		BBR_RS17205	0.77	+0.3
1,638,814	-		BBR_RS17205	0.77	+1.6
1,638,814	-		BBR_RS17205	0.77	-1.6
1,638,814	-		BBR_RS17205	0.77	+3.5
1,638,814	-		BBR_RS17205	0.77	-1.3
1,638,822	-		BBR_RS17205	0.77	+2.6
1,638,832	-		BBR_RS17205	0.78	+1.3
1,638,832	-		BBR_RS17205	0.78	+3.4
1,638,861	+		BBR_RS17205	0.79	-0.5
1,638,893	+		BBR_RS17205	0.80	-0.7
1,638,901	+		BBR_RS17205	0.80	+0.8
1,638,906	+		BBR_RS17205	0.81	+0.8
1,638,909	-		BBR_RS17205	0.81	+1.9
1,638,909	-		BBR_RS17205	0.81	+2.6
1,638,909	-		BBR_RS17205	0.81	+2.3
1,638,909	-		BBR_RS17205	0.81	+1.1
1,638,909	-		BBR_RS17205	0.81	+2.5
1,638,911	+		BBR_RS17205	0.81	-1.8
1,638,911	+		BBR_RS17205	0.81	+3.9
1,638,911	-		BBR_RS17205	0.81	+3.2
1,638,914	-		BBR_RS17205	0.81	+1.3
1,638,934	+		BBR_RS17205	0.82	-2.2
1,638,965	-		BBR_RS17205	0.83	-2.5
1,638,966	-		BBR_RS17205	0.83	+1.7
1,638,968	+		BBR_RS17205	0.83	+0.2
1,639,029	+		BBR_RS17205	0.85	+4.4
1,639,087	+		BBR_RS17205	0.87	-1.5
1,639,100	-		BBR_RS17205	0.88	+2.0
1,639,103	-		BBR_RS17205	0.88	+0.9
1,639,124	-		BBR_RS17205	0.88	+0.2
1,639,138	-		BBR_RS17205	0.89	-2.3
1,639,162	-		BBR_RS17205	0.90	-2.7
1,639,162	-		BBR_RS17205	0.90	+0.8
1,639,283	-				+1.0
1,639,291	-				+3.1
1,639,291	-				+2.8
1,639,301	+				-0.9
1,639,301	+				+1.5
1,639,309	-				+1.0
1,639,309	-				+0.8
1,639,309	-				+2.2
1,639,309	-				+2.1
1,639,309	-				+0.7
1,639,309	-				+2.9
1,639,313	+				+2.4
1,639,321	-				-1.5
1,639,327	+				+1.0
1,639,337	-				+2.0
1,639,380	+				+0.4
1,639,404	+				+1.0
1,639,404	+				+0.7
1,639,412	-				-1.4
1,639,412	-				+0.2
1,639,412	-				+1.1
1,639,421	+				-0.3
1,639,421	+				+1.3
1,639,616	-		BBR_RS17210	0.11	+1.1
1,639,624	+		BBR_RS17210	0.12	-1.7
1,639,679	+		BBR_RS17210	0.17	-0.4
1,639,693	-		BBR_RS17210	0.18	-0.2
1,639,693	-		BBR_RS17210	0.18	-0.7
1,639,755	-		BBR_RS17210	0.23	+0.3
1,639,768	-		BBR_RS17210	0.24	+5.6
1,639,768	-		BBR_RS17210	0.24	-0.5
1,639,785	+		BBR_RS17210	0.25	-2.3
1,639,817	+		BBR_RS17210	0.28	-1.5
1,639,820	-		BBR_RS17210	0.28	+0.3
1,639,820	-		BBR_RS17210	0.28	+0.3
1,639,850	+		BBR_RS17210	0.31	-1.4
1,639,891	-		BBR_RS17210	0.34	+2.5
1,640,028	-		BBR_RS17210	0.45	+2.2
1,640,036	+		BBR_RS17210	0.46	-1.3
1,640,042	-		BBR_RS17210	0.47	+1.7
1,640,044	-		BBR_RS17210	0.47	-1.3
1,640,044	-		BBR_RS17210	0.47	+1.6
1,640,044	-		BBR_RS17210	0.47	+3.8
1,640,120	+		BBR_RS17210	0.53	-0.7
1,640,128	-		BBR_RS17210	0.54	-1.9
1,640,130	+		BBR_RS17210	0.54	-0.2
1,640,130	+		BBR_RS17210	0.54	+1.2
1,640,138	-		BBR_RS17210	0.55	+2.1
1,640,138	-		BBR_RS17210	0.55	-0.9
1,640,159	+		BBR_RS17210	0.56	+3.3
1,640,159	-		BBR_RS17210	0.56	+3.0
1,640,192	-		BBR_RS17210	0.59	-0.0
1,640,192	-		BBR_RS17210	0.59	+3.6
1,640,192	-		BBR_RS17210	0.59	+0.5
1,640,206	-		BBR_RS17210	0.60	-0.4
1,640,206	-		BBR_RS17210	0.60	+1.7
1,640,216	-		BBR_RS17210	0.61	+1.2
1,640,252	-		BBR_RS17210	0.64	+0.6
1,640,261	+		BBR_RS17210	0.65	+0.4
1,640,269	-		BBR_RS17210	0.65	+2.7
1,640,293	+		BBR_RS17210	0.67	+2.4
1,640,320	-		BBR_RS17210	0.70	+2.0
1,640,328	-		BBR_RS17210	0.70	+1.4
1,640,328	-		BBR_RS17210	0.70	-2.7
1,640,336	+		BBR_RS17210	0.71	-0.9
1,640,336	+		BBR_RS17210	0.71	-0.3
1,640,363	+		BBR_RS17210	0.73	-1.0
1,640,390	-		BBR_RS17210	0.75	+1.5
1,640,404	-		BBR_RS17210	0.77	+1.3
1,640,404	-		BBR_RS17210	0.77	-3.2
1,640,404	-		BBR_RS17210	0.77	+0.3
1,640,406	+		BBR_RS17210	0.77	+0.2
1,640,414	-		BBR_RS17210	0.77	+2.4
1,640,414	-		BBR_RS17210	0.77	+1.0
1,640,414	-		BBR_RS17210	0.77	+0.2
1,640,414	-		BBR_RS17210	0.77	+1.5
1,640,423	-		BBR_RS17210	0.78	-2.6
1,640,425	+		BBR_RS17210	0.78	+0.8
1,640,425	+		BBR_RS17210	0.78	+3.8
1,640,431	-		BBR_RS17210	0.79	-2.7
1,640,438	+		BBR_RS17210	0.79	+1.3
1,640,492	-		BBR_RS17210	0.84	-0.2
1,640,492	-		BBR_RS17210	0.84	-0.6
1,640,574	+				+2.8
1,640,585	-				-0.5
1,640,596	-				-1.6
1,640,597	-				+2.4
1,640,625	-				-2.2
1,640,682	-				+1.7
1,640,682	-				+0.5
1,640,689	-				-2.6
1,640,689	-				+2.0
1,640,694	-				+1.4
1,640,694	-				+1.0
1,640,737	-				+3.0
1,640,737	-				-0.6
1,640,739	+				+2.6
1,640,803	-				+3.2
1,640,820	+				+0.5
1,640,836	-				+0.4
1,640,836	-				-3.5
1,640,856	+				-0.9
1,640,856	+				+1.4
1,640,878	-				+0.2
1,640,908	+		BBR_RS17215	0.12	+0.6
1,640,913	+		BBR_RS17215	0.12	-2.6
1,640,915	-		BBR_RS17215	0.13	-1.3
1,640,921	-		BBR_RS17215	0.13	+2.3
1,640,925	+		BBR_RS17215	0.14	-0.9
1,640,935	+		BBR_RS17215	0.15	+2.2
1,640,962	-		BBR_RS17215	0.19	-0.1
1,640,962	-		BBR_RS17215	0.19	-2.1
1,641,021	-		BBR_RS17215	0.26	-3.2
1,641,070	+		BBR_RS17215	0.32	+0.1
1,641,146	+		BBR_RS17215	0.41	+1.2
1,641,185	-		BBR_RS17215	0.46	-1.3
1,641,216	+		BBR_RS17215	0.50	-1.0
1,641,216	+		BBR_RS17215	0.50	+2.3
1,641,224	-		BBR_RS17215	0.51	-1.3
1,641,225	+		BBR_RS17215	0.51	-0.5
1,641,246	-		BBR_RS17215	0.54	-1.3
1,641,246	-		BBR_RS17215	0.54	+2.4
1,641,262	+		BBR_RS17215	0.56	-2.7
1,641,294	+		BBR_RS17215	0.60	+2.7
1,641,301	-		BBR_RS17215	0.60	+1.9
1,641,303	-		BBR_RS17215	0.61	-1.9
1,641,305	+		BBR_RS17215	0.61	-1.2
1,641,305	+		BBR_RS17215	0.61	-1.1
1,641,338	+		BBR_RS17215	0.65	+1.3
1,641,343	-		BBR_RS17215	0.66	+0.1
1,641,346	-		BBR_RS17215	0.66	-2.0
1,641,348	+		BBR_RS17215	0.66	-0.0
1,641,348	+		BBR_RS17215	0.66	-1.7
1,641,348	+		BBR_RS17215	0.66	+0.1
1,641,348	+		BBR_RS17215	0.66	-0.7
1,641,356	-		BBR_RS17215	0.67	-2.5
1,641,356	-		BBR_RS17215	0.67	-1.3
1,641,356	-		BBR_RS17215	0.67	-2.1
1,641,356	-		BBR_RS17215	0.67	-1.9
1,641,356	-		BBR_RS17215	0.67	+0.0
1,641,356	-		BBR_RS17215	0.67	-1.8
1,641,375	+		BBR_RS17215	0.70	-0.5
1,641,399	+		BBR_RS17215	0.72	+2.8
1,641,399	+		BBR_RS17215	0.72	-0.5
1,641,400	+		BBR_RS17215	0.73	-0.4
1,641,485	+		BBR_RS17215	0.83	+1.7
1,641,513	+		BBR_RS17215	0.87	-0.9
1,641,513	+		BBR_RS17215	0.87	+1.6
1,641,513	+		BBR_RS17215	0.87	-1.4
1,641,521	-		BBR_RS17215	0.88	-2.0
1,641,521	-		BBR_RS17215	0.88	-0.7
1,641,521	-		BBR_RS17215	0.88	+2.0
1,641,553	+				-1.1
1,641,563	-				+0.1
1,641,575	-				-0.9
1,641,635	-				-1.9
1,641,643	+				-2.4
1,641,643	+				+3.2
1,641,658	+				+2.4
1,641,666	-				+2.7