Experiment: CDM1 without Phenylalanine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BBR_RS13410 and BBR_RS13415 are separated by 57 nucleotides BBR_RS13415 and BBR_RS20775 are separated by 157 nucleotides BBR_RS20775 and BBR_RS13420 are separated by 9 nucleotides BBR_RS13420 and BBR_RS13425 are separated by 126 nucleotides
BBR_RS13410: BBR_RS13410 - hypothetical protein, at 779,965 to 781,011
_RS13410
BBR_RS13415: BBR_RS13415 - hypothetical protein, at 781,069 to 781,701
_RS13415
BBR_RS20775: BBR_RS20775 - DUF4230 domain-containing protein, at 781,859 to 781,969
_RS20775
BBR_RS13420: BBR_RS13420 - DUF4230 domain-containing protein, at 781,979 to 782,266
_RS13420
BBR_RS13425: BBR_RS13425 - hypothetical protein, at 782,393 to 783,205
_RS13425
Position (kb) 781
782 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 780.069 kb on + strand at 780.162 kb on + strand, within BBR_RS13410 at 780.170 kb on - strand, within BBR_RS13410 at 780.196 kb on - strand, within BBR_RS13410 at 780.196 kb on - strand, within BBR_RS13410 at 780.197 kb on + strand, within BBR_RS13410 at 780.197 kb on + strand, within BBR_RS13410 at 780.253 kb on + strand, within BBR_RS13410 at 780.253 kb on + strand, within BBR_RS13410 at 780.307 kb on - strand, within BBR_RS13410 at 780.371 kb on + strand, within BBR_RS13410 at 780.391 kb on - strand, within BBR_RS13410 at 780.391 kb on - strand, within BBR_RS13410 at 780.422 kb on - strand, within BBR_RS13410 at 780.422 kb on - strand, within BBR_RS13410 at 780.443 kb on - strand, within BBR_RS13410 at 780.447 kb on + strand, within BBR_RS13410 at 780.447 kb on + strand, within BBR_RS13410 at 780.511 kb on + strand, within BBR_RS13410 at 780.511 kb on + strand, within BBR_RS13410 at 780.552 kb on - strand, within BBR_RS13410 at 780.555 kb on - strand, within BBR_RS13410 at 780.599 kb on - strand, within BBR_RS13410 at 780.650 kb on - strand, within BBR_RS13410 at 780.659 kb on + strand, within BBR_RS13410 at 780.660 kb on - strand, within BBR_RS13410 at 780.663 kb on - strand, within BBR_RS13410 at 780.672 kb on - strand, within BBR_RS13410 at 780.674 kb on + strand, within BBR_RS13410 at 780.674 kb on + strand, within BBR_RS13410 at 780.710 kb on + strand, within BBR_RS13410 at 780.712 kb on + strand, within BBR_RS13410 at 780.712 kb on + strand, within BBR_RS13410 at 780.722 kb on + strand, within BBR_RS13410 at 780.786 kb on - strand, within BBR_RS13410 at 780.870 kb on + strand, within BBR_RS13410 at 780.883 kb on - strand, within BBR_RS13410 at 780.895 kb on - strand, within BBR_RS13410 at 780.895 kb on - strand, within BBR_RS13410 at 780.895 kb on - strand, within BBR_RS13410 at 780.980 kb on - strand at 781.027 kb on - strand at 781.034 kb on - strand at 781.107 kb on - strand at 781.138 kb on - strand, within BBR_RS13415 at 781.156 kb on + strand, within BBR_RS13415 at 781.164 kb on - strand, within BBR_RS13415 at 781.182 kb on + strand, within BBR_RS13415 at 781.182 kb on + strand, within BBR_RS13415 at 781.192 kb on - strand, within BBR_RS13415 at 781.244 kb on - strand, within BBR_RS13415 at 781.254 kb on - strand, within BBR_RS13415 at 781.269 kb on - strand, within BBR_RS13415 at 781.281 kb on + strand, within BBR_RS13415 at 781.297 kb on + strand, within BBR_RS13415 at 781.297 kb on + strand, within BBR_RS13415 at 781.305 kb on - strand, within BBR_RS13415 at 781.305 kb on - strand, within BBR_RS13415 at 781.305 kb on - strand, within BBR_RS13415 at 781.305 kb on - strand, within BBR_RS13415 at 781.305 kb on - strand, within BBR_RS13415 at 781.341 kb on - strand, within BBR_RS13415 at 781.367 kb on + strand, within BBR_RS13415 at 781.408 kb on + strand, within BBR_RS13415 at 781.408 kb on + strand, within BBR_RS13415 at 781.408 kb on + strand, within BBR_RS13415 at 781.413 kb on - strand, within BBR_RS13415 at 781.416 kb on - strand, within BBR_RS13415 at 781.416 kb on - strand, within BBR_RS13415 at 781.572 kb on + strand, within BBR_RS13415 at 781.597 kb on - strand, within BBR_RS13415 at 781.599 kb on - strand, within BBR_RS13415 at 781.599 kb on - strand, within BBR_RS13415 at 781.599 kb on - strand, within BBR_RS13415 at 781.628 kb on - strand, within BBR_RS13415 at 781.681 kb on + strand at 781.681 kb on - strand at 781.683 kb on - strand at 781.701 kb on - strand at 781.713 kb on - strand at 781.728 kb on - strand at 781.737 kb on - strand at 781.763 kb on - strand at 781.765 kb on - strand at 781.778 kb on + strand at 781.791 kb on + strand at 781.791 kb on + strand at 781.817 kb on + strand at 781.830 kb on - strand at 781.861 kb on + strand at 781.900 kb on - strand, within BBR_RS20775 at 781.941 kb on + strand, within BBR_RS20775 at 781.941 kb on + strand, within BBR_RS20775 at 782.070 kb on + strand, within BBR_RS13420 at 782.139 kb on - strand, within BBR_RS13420 at 782.155 kb on + strand, within BBR_RS13420 at 782.179 kb on + strand, within BBR_RS13420 at 782.210 kb on - strand, within BBR_RS13420 at 782.242 kb on + strand at 782.247 kb on - strand at 782.260 kb on - strand at 782.339 kb on - strand at 782.408 kb on - strand at 782.417 kb on + strand at 782.424 kb on - strand at 782.445 kb on + strand at 782.499 kb on + strand, within BBR_RS13425 at 782.499 kb on + strand, within BBR_RS13425 at 782.556 kb on + strand, within BBR_RS13425 at 782.676 kb on - strand, within BBR_RS13425 at 782.676 kb on - strand, within BBR_RS13425
Per-strain Table
Position Strand Gene LocusTag Fraction CDM1 without Phenylalanine remove 780,069 + +0.3 780,162 + BBR_RS13410 0.19 -2.4 780,170 - BBR_RS13410 0.20 +0.0 780,196 - BBR_RS13410 0.22 +0.3 780,196 - BBR_RS13410 0.22 +0.3 780,197 + BBR_RS13410 0.22 -0.8 780,197 + BBR_RS13410 0.22 -0.8 780,253 + BBR_RS13410 0.28 +2.0 780,253 + BBR_RS13410 0.28 +0.4 780,307 - BBR_RS13410 0.33 -1.2 780,371 + BBR_RS13410 0.39 +3.4 780,391 - BBR_RS13410 0.41 +1.7 780,391 - BBR_RS13410 0.41 -0.3 780,422 - BBR_RS13410 0.44 -1.2 780,422 - BBR_RS13410 0.44 -2.0 780,443 - BBR_RS13410 0.46 +1.2 780,447 + BBR_RS13410 0.46 -1.6 780,447 + BBR_RS13410 0.46 +0.1 780,511 + BBR_RS13410 0.52 -1.7 780,511 + BBR_RS13410 0.52 -0.9 780,552 - BBR_RS13410 0.56 +0.8 780,555 - BBR_RS13410 0.56 -0.9 780,599 - BBR_RS13410 0.61 -1.7 780,650 - BBR_RS13410 0.65 +0.4 780,659 + BBR_RS13410 0.66 +0.1 780,660 - BBR_RS13410 0.66 -0.4 780,663 - BBR_RS13410 0.67 +1.7 780,672 - BBR_RS13410 0.68 +0.5 780,674 + BBR_RS13410 0.68 +0.5 780,674 + BBR_RS13410 0.68 -1.5 780,710 + BBR_RS13410 0.71 -2.2 780,712 + BBR_RS13410 0.71 +0.8 780,712 + BBR_RS13410 0.71 +1.7 780,722 + BBR_RS13410 0.72 +0.4 780,786 - BBR_RS13410 0.78 +2.2 780,870 + BBR_RS13410 0.86 +2.0 780,883 - BBR_RS13410 0.88 +3.1 780,895 - BBR_RS13410 0.89 +1.3 780,895 - BBR_RS13410 0.89 +1.5 780,895 - BBR_RS13410 0.89 +1.6 780,980 - -0.6 781,027 - +2.5 781,034 - -3.0 781,107 - +3.4 781,138 - BBR_RS13415 0.11 +1.5 781,156 + BBR_RS13415 0.14 +0.9 781,164 - BBR_RS13415 0.15 -2.7 781,182 + BBR_RS13415 0.18 -0.9 781,182 + BBR_RS13415 0.18 -2.2 781,192 - BBR_RS13415 0.19 +0.1 781,244 - BBR_RS13415 0.28 -2.3 781,254 - BBR_RS13415 0.29 -1.9 781,269 - BBR_RS13415 0.32 -1.8 781,281 + BBR_RS13415 0.33 -0.4 781,297 + BBR_RS13415 0.36 -1.3 781,297 + BBR_RS13415 0.36 +1.2 781,305 - BBR_RS13415 0.37 -0.8 781,305 - BBR_RS13415 0.37 +0.6 781,305 - BBR_RS13415 0.37 -1.7 781,305 - BBR_RS13415 0.37 +0.7 781,305 - BBR_RS13415 0.37 +2.1 781,341 - BBR_RS13415 0.43 +1.8 781,367 + BBR_RS13415 0.47 -0.9 781,408 + BBR_RS13415 0.54 -2.3 781,408 + BBR_RS13415 0.54 -0.7 781,408 + BBR_RS13415 0.54 -2.6 781,413 - BBR_RS13415 0.54 -2.1 781,416 - BBR_RS13415 0.55 +0.9 781,416 - BBR_RS13415 0.55 -2.0 781,572 + BBR_RS13415 0.79 -2.6 781,597 - BBR_RS13415 0.83 -1.9 781,599 - BBR_RS13415 0.84 +1.8 781,599 - BBR_RS13415 0.84 +3.0 781,599 - BBR_RS13415 0.84 -1.8 781,628 - BBR_RS13415 0.88 +1.3 781,681 + +0.2 781,681 - +2.2 781,683 - -0.5 781,701 - +2.4 781,713 - -1.3 781,728 - -1.6 781,737 - -2.0 781,763 - -1.7 781,765 - +0.1 781,778 + -1.7 781,791 + -2.4 781,791 + -2.1 781,817 + +2.4 781,830 - -1.7 781,861 + -1.7 781,900 - BBR_RS20775 0.37 -0.9 781,941 + BBR_RS20775 0.74 -1.8 781,941 + BBR_RS20775 0.74 -0.9 782,070 + BBR_RS13420 0.32 -3.4 782,139 - BBR_RS13420 0.56 +1.0 782,155 + BBR_RS13420 0.61 -1.8 782,179 + BBR_RS13420 0.69 +1.8 782,210 - BBR_RS13420 0.80 -2.2 782,242 + +0.6 782,247 - -2.6 782,260 - -2.3 782,339 - +3.6 782,408 - +2.2 782,417 + -1.0 782,424 - +1.3 782,445 + -2.0 782,499 + BBR_RS13425 0.13 -2.2 782,499 + BBR_RS13425 0.13 +1.2 782,556 + BBR_RS13425 0.20 -0.7 782,676 - BBR_RS13425 0.35 -1.1 782,676 - BBR_RS13425 0.35 +1.2
Or see this region's nucleotide sequence