Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS12040

Experiment: CDM1 without Phenylalanine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS12030 and BBR_RS12035 are separated by 83 nucleotidesBBR_RS12035 and BBR_RS12040 are separated by 47 nucleotidesBBR_RS12040 and BBR_RS12045 are separated by 101 nucleotides BBR_RS12030: BBR_RS12030 - F0F1 ATP synthase subunit epsilon, at 449,686 to 449,979 _RS12030 BBR_RS12035: BBR_RS12035 - endonuclease NucS, at 450,063 to 450,767 _RS12035 BBR_RS12040: BBR_RS12040 - peptidyl-prolyl cis-trans isomerase, at 450,815 to 451,768 _RS12040 BBR_RS12045: BBR_RS12045 - hypothetical protein, at 451,870 to 453,108 _RS12045 Position (kb) 450 451 452Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 449.942 kb on - strand, within BBR_RS12030at 449.945 kb on + strand, within BBR_RS12030at 449.945 kb on + strand, within BBR_RS12030at 449.959 kb on - strandat 449.969 kb on + strandat 449.969 kb on - strandat 449.977 kb on - strandat 449.977 kb on - strandat 449.978 kb on + strandat 449.979 kb on - strandat 449.988 kb on + strandat 449.988 kb on + strandat 449.988 kb on + strandat 449.988 kb on + strandat 449.988 kb on + strandat 449.996 kb on - strandat 449.996 kb on - strandat 449.996 kb on - strandat 450.019 kb on + strandat 450.040 kb on + strandat 450.040 kb on + strandat 450.048 kb on + strandat 450.053 kb on + strandat 450.053 kb on + strandat 450.053 kb on + strandat 450.061 kb on - strandat 450.061 kb on - strandat 450.061 kb on - strandat 450.085 kb on + strandat 450.090 kb on + strandat 450.090 kb on + strandat 450.097 kb on + strandat 450.115 kb on - strandat 450.128 kb on + strandat 450.141 kb on - strand, within BBR_RS12035at 450.190 kb on + strand, within BBR_RS12035at 450.190 kb on + strand, within BBR_RS12035at 450.190 kb on + strand, within BBR_RS12035at 450.190 kb on + strand, within BBR_RS12035at 450.190 kb on + strand, within BBR_RS12035at 450.198 kb on - strand, within BBR_RS12035at 450.198 kb on - strand, within BBR_RS12035at 450.198 kb on - strand, within BBR_RS12035at 450.198 kb on - strand, within BBR_RS12035at 450.198 kb on - strand, within BBR_RS12035at 450.198 kb on - strand, within BBR_RS12035at 450.228 kb on + strand, within BBR_RS12035at 450.228 kb on + strand, within BBR_RS12035at 450.236 kb on - strand, within BBR_RS12035at 450.236 kb on - strand, within BBR_RS12035at 450.244 kb on - strand, within BBR_RS12035at 450.250 kb on - strand, within BBR_RS12035at 450.261 kb on + strand, within BBR_RS12035at 450.264 kb on + strand, within BBR_RS12035at 450.266 kb on + strand, within BBR_RS12035at 450.266 kb on + strand, within BBR_RS12035at 450.266 kb on + strand, within BBR_RS12035at 450.286 kb on - strand, within BBR_RS12035at 450.311 kb on + strand, within BBR_RS12035at 450.311 kb on + strand, within BBR_RS12035at 450.313 kb on + strand, within BBR_RS12035at 450.320 kb on - strand, within BBR_RS12035at 450.344 kb on + strand, within BBR_RS12035at 450.344 kb on + strand, within BBR_RS12035at 450.344 kb on + strand, within BBR_RS12035at 450.349 kb on + strand, within BBR_RS12035at 450.349 kb on + strand, within BBR_RS12035at 450.352 kb on - strand, within BBR_RS12035at 450.361 kb on + strand, within BBR_RS12035at 450.379 kb on + strand, within BBR_RS12035at 450.387 kb on - strand, within BBR_RS12035at 450.389 kb on + strand, within BBR_RS12035at 450.389 kb on + strand, within BBR_RS12035at 450.397 kb on - strand, within BBR_RS12035at 450.397 kb on - strand, within BBR_RS12035at 450.402 kb on + strand, within BBR_RS12035at 450.408 kb on - strand, within BBR_RS12035at 450.408 kb on - strand, within BBR_RS12035at 450.419 kb on + strand, within BBR_RS12035at 450.437 kb on + strand, within BBR_RS12035at 450.445 kb on - strand, within BBR_RS12035at 450.470 kb on - strand, within BBR_RS12035at 450.504 kb on - strand, within BBR_RS12035at 450.514 kb on - strand, within BBR_RS12035at 450.525 kb on - strand, within BBR_RS12035at 450.536 kb on - strand, within BBR_RS12035at 450.536 kb on - strand, within BBR_RS12035at 450.582 kb on - strand, within BBR_RS12035at 450.629 kb on - strand, within BBR_RS12035at 450.641 kb on - strand, within BBR_RS12035at 450.651 kb on + strand, within BBR_RS12035at 450.656 kb on + strand, within BBR_RS12035at 450.658 kb on + strand, within BBR_RS12035at 450.658 kb on + strand, within BBR_RS12035at 450.659 kb on - strand, within BBR_RS12035at 450.659 kb on - strand, within BBR_RS12035at 450.659 kb on - strand, within BBR_RS12035at 450.659 kb on - strand, within BBR_RS12035at 450.696 kb on + strand, within BBR_RS12035at 450.696 kb on + strand, within BBR_RS12035at 450.698 kb on - strandat 450.706 kb on + strandat 450.736 kb on - strandat 450.736 kb on - strandat 450.739 kb on - strandat 450.739 kb on - strandat 450.744 kb on + strandat 450.751 kb on + strandat 450.758 kb on - strandat 450.758 kb on - strandat 450.761 kb on + strandat 450.773 kb on + strandat 450.819 kb on - strandat 450.821 kb on - strandat 450.888 kb on + strandat 450.901 kb on - strandat 450.901 kb on - strandat 450.901 kb on - strandat 450.901 kb on - strandat 450.901 kb on - strandat 450.901 kb on - strandat 450.952 kb on - strand, within BBR_RS12040at 450.963 kb on - strand, within BBR_RS12040at 450.975 kb on - strand, within BBR_RS12040at 450.975 kb on - strand, within BBR_RS12040at 450.995 kb on - strand, within BBR_RS12040at 451.001 kb on + strand, within BBR_RS12040at 451.001 kb on + strand, within BBR_RS12040at 451.016 kb on + strand, within BBR_RS12040at 451.019 kb on - strand, within BBR_RS12040at 451.019 kb on - strand, within BBR_RS12040at 451.024 kb on + strand, within BBR_RS12040at 451.026 kb on + strand, within BBR_RS12040at 451.026 kb on + strand, within BBR_RS12040at 451.057 kb on + strand, within BBR_RS12040at 451.102 kb on - strand, within BBR_RS12040at 451.113 kb on + strand, within BBR_RS12040at 451.115 kb on + strand, within BBR_RS12040at 451.121 kb on - strand, within BBR_RS12040at 451.121 kb on - strand, within BBR_RS12040at 451.121 kb on - strand, within BBR_RS12040at 451.121 kb on - strand, within BBR_RS12040at 451.158 kb on - strand, within BBR_RS12040at 451.158 kb on - strand, within BBR_RS12040at 451.158 kb on - strand, within BBR_RS12040at 451.160 kb on + strand, within BBR_RS12040at 451.160 kb on + strand, within BBR_RS12040at 451.160 kb on + strand, within BBR_RS12040at 451.176 kb on + strand, within BBR_RS12040at 451.224 kb on + strand, within BBR_RS12040at 451.224 kb on + strand, within BBR_RS12040at 451.224 kb on + strand, within BBR_RS12040at 451.224 kb on + strand, within BBR_RS12040at 451.226 kb on + strand, within BBR_RS12040at 451.226 kb on + strand, within BBR_RS12040at 451.231 kb on - strand, within BBR_RS12040at 451.231 kb on - strand, within BBR_RS12040at 451.232 kb on - strand, within BBR_RS12040at 451.232 kb on - strand, within BBR_RS12040at 451.234 kb on + strand, within BBR_RS12040at 451.234 kb on + strand, within BBR_RS12040at 451.258 kb on + strand, within BBR_RS12040at 451.265 kb on - strand, within BBR_RS12040at 451.349 kb on - strand, within BBR_RS12040at 451.364 kb on - strand, within BBR_RS12040at 451.374 kb on - strand, within BBR_RS12040at 451.377 kb on + strand, within BBR_RS12040at 451.385 kb on - strand, within BBR_RS12040at 451.455 kb on - strand, within BBR_RS12040at 451.532 kb on - strand, within BBR_RS12040at 451.662 kb on - strand, within BBR_RS12040at 451.670 kb on - strand, within BBR_RS12040at 451.748 kb on - strandat 451.750 kb on + strandat 451.770 kb on + strandat 451.770 kb on + strandat 451.778 kb on - strandat 451.821 kb on - strandat 451.843 kb on + strandat 451.853 kb on - strandat 451.896 kb on + strandat 451.961 kb on + strandat 451.971 kb on + strandat 452.010 kb on + strand, within BBR_RS12045at 452.059 kb on + strand, within BBR_RS12045at 452.071 kb on + strand, within BBR_RS12045

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Per-strain Table

Position Strand Gene LocusTag Fraction CDM1 without Phenylalanine
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449,942 - BBR_RS12030 0.87 +0.5
449,945 + BBR_RS12030 0.88 +2.4
449,945 + BBR_RS12030 0.88 +2.1
449,959 - +1.2
449,969 + +0.7
449,969 - -1.1
449,977 - -1.2
449,977 - +2.4
449,978 + -0.5
449,979 - +1.5
449,988 + -0.9
449,988 + -0.4
449,988 + +3.1
449,988 + +0.6
449,988 + +3.7
449,996 - -3.3
449,996 - -1.6
449,996 - -1.1
450,019 + +0.3
450,040 + +1.7
450,040 + -0.9
450,048 + -1.3
450,053 + -2.4
450,053 + +3.7
450,053 + +0.6
450,061 - +0.2
450,061 - +0.0
450,061 - +3.3
450,085 + +0.9
450,090 + -1.0
450,090 + +1.7
450,097 + -1.1
450,115 - -1.3
450,128 + +3.7
450,141 - BBR_RS12035 0.11 +2.7
450,190 + BBR_RS12035 0.18 -1.8
450,190 + BBR_RS12035 0.18 +1.1
450,190 + BBR_RS12035 0.18 +0.3
450,190 + BBR_RS12035 0.18 -1.5
450,190 + BBR_RS12035 0.18 -0.2
450,198 - BBR_RS12035 0.19 +0.3
450,198 - BBR_RS12035 0.19 +0.0
450,198 - BBR_RS12035 0.19 -1.8
450,198 - BBR_RS12035 0.19 +2.1
450,198 - BBR_RS12035 0.19 +1.8
450,198 - BBR_RS12035 0.19 -1.3
450,228 + BBR_RS12035 0.23 -0.6
450,228 + BBR_RS12035 0.23 +1.6
450,236 - BBR_RS12035 0.25 -1.4
450,236 - BBR_RS12035 0.25 -2.3
450,244 - BBR_RS12035 0.26 -0.3
450,250 - BBR_RS12035 0.27 -2.6
450,261 + BBR_RS12035 0.28 +2.1
450,264 + BBR_RS12035 0.29 +2.1
450,266 + BBR_RS12035 0.29 +0.8
450,266 + BBR_RS12035 0.29 +2.0
450,266 + BBR_RS12035 0.29 +1.5
450,286 - BBR_RS12035 0.32 -1.6
450,311 + BBR_RS12035 0.35 +1.9
450,311 + BBR_RS12035 0.35 +2.4
450,313 + BBR_RS12035 0.35 -1.7
450,320 - BBR_RS12035 0.36 -1.4
450,344 + BBR_RS12035 0.40 +3.6
450,344 + BBR_RS12035 0.40 +1.9
450,344 + BBR_RS12035 0.40 +2.8
450,349 + BBR_RS12035 0.41 -2.2
450,349 + BBR_RS12035 0.41 +1.9
450,352 - BBR_RS12035 0.41 +1.8
450,361 + BBR_RS12035 0.42 -0.5
450,379 + BBR_RS12035 0.45 +1.5
450,387 - BBR_RS12035 0.46 +3.0
450,389 + BBR_RS12035 0.46 -0.1
450,389 + BBR_RS12035 0.46 -1.4
450,397 - BBR_RS12035 0.47 -2.7
450,397 - BBR_RS12035 0.47 -0.9
450,402 + BBR_RS12035 0.48 -0.4
450,408 - BBR_RS12035 0.49 +0.3
450,408 - BBR_RS12035 0.49 -2.5
450,419 + BBR_RS12035 0.50 -0.0
450,437 + BBR_RS12035 0.53 -1.8
450,445 - BBR_RS12035 0.54 -1.7
450,470 - BBR_RS12035 0.58 -2.5
450,504 - BBR_RS12035 0.63 -0.5
450,514 - BBR_RS12035 0.64 +2.8
450,525 - BBR_RS12035 0.66 -0.7
450,536 - BBR_RS12035 0.67 -2.2
450,536 - BBR_RS12035 0.67 -1.5
450,582 - BBR_RS12035 0.74 -1.5
450,629 - BBR_RS12035 0.80 +2.8
450,641 - BBR_RS12035 0.82 -2.0
450,651 + BBR_RS12035 0.83 -1.9
450,656 + BBR_RS12035 0.84 -3.3
450,658 + BBR_RS12035 0.84 +0.7
450,658 + BBR_RS12035 0.84 -0.8
450,659 - BBR_RS12035 0.85 -1.3
450,659 - BBR_RS12035 0.85 -1.4
450,659 - BBR_RS12035 0.85 -1.8
450,659 - BBR_RS12035 0.85 -1.6
450,696 + BBR_RS12035 0.90 +0.6
450,696 + BBR_RS12035 0.90 +1.1
450,698 - +0.7
450,706 + +2.4
450,736 - +2.0
450,736 - +2.6
450,739 - -2.5
450,739 - -1.7
450,744 + +1.5
450,751 + -0.9
450,758 - +1.3
450,758 - +1.2
450,761 + +0.1
450,773 + -2.9
450,819 - -2.0
450,821 - -1.3
450,888 + +2.6
450,901 - +2.6
450,901 - -0.5
450,901 - +3.7
450,901 - +2.5
450,901 - +3.8
450,901 - +3.1
450,952 - BBR_RS12040 0.14 +3.2
450,963 - BBR_RS12040 0.16 -1.1
450,975 - BBR_RS12040 0.17 +2.6
450,975 - BBR_RS12040 0.17 -0.8
450,995 - BBR_RS12040 0.19 +3.5
451,001 + BBR_RS12040 0.19 +3.3
451,001 + BBR_RS12040 0.19 +2.2
451,016 + BBR_RS12040 0.21 +2.2
451,019 - BBR_RS12040 0.21 +2.9
451,019 - BBR_RS12040 0.21 +0.4
451,024 + BBR_RS12040 0.22 +3.8
451,026 + BBR_RS12040 0.22 +3.6
451,026 + BBR_RS12040 0.22 +3.9
451,057 + BBR_RS12040 0.25 +3.7
451,102 - BBR_RS12040 0.30 +2.3
451,113 + BBR_RS12040 0.31 -2.0
451,115 + BBR_RS12040 0.31 +1.4
451,121 - BBR_RS12040 0.32 +3.9
451,121 - BBR_RS12040 0.32 +1.7
451,121 - BBR_RS12040 0.32 +1.9
451,121 - BBR_RS12040 0.32 +3.2
451,158 - BBR_RS12040 0.36 +1.1
451,158 - BBR_RS12040 0.36 +1.0
451,158 - BBR_RS12040 0.36 +1.4
451,160 + BBR_RS12040 0.36 +5.2
451,160 + BBR_RS12040 0.36 +0.0
451,160 + BBR_RS12040 0.36 +1.7
451,176 + BBR_RS12040 0.38 +1.9
451,224 + BBR_RS12040 0.43 +3.5
451,224 + BBR_RS12040 0.43 +2.1
451,224 + BBR_RS12040 0.43 +1.2
451,224 + BBR_RS12040 0.43 +4.0
451,226 + BBR_RS12040 0.43 +1.2
451,226 + BBR_RS12040 0.43 +2.1
451,231 - BBR_RS12040 0.44 +4.2
451,231 - BBR_RS12040 0.44 +1.7
451,232 - BBR_RS12040 0.44 +5.0
451,232 - BBR_RS12040 0.44 +5.1
451,234 + BBR_RS12040 0.44 -0.5
451,234 + BBR_RS12040 0.44 +2.2
451,258 + BBR_RS12040 0.46 +2.7
451,265 - BBR_RS12040 0.47 +2.7
451,349 - BBR_RS12040 0.56 -0.3
451,364 - BBR_RS12040 0.58 +0.3
451,374 - BBR_RS12040 0.59 -1.4
451,377 + BBR_RS12040 0.59 +0.4
451,385 - BBR_RS12040 0.60 -0.7
451,455 - BBR_RS12040 0.67 -0.2
451,532 - BBR_RS12040 0.75 -1.2
451,662 - BBR_RS12040 0.89 -0.2
451,670 - BBR_RS12040 0.90 -0.7
451,748 - -1.7
451,750 + +0.3
451,770 + +0.7
451,770 + -0.7
451,778 - -1.4
451,821 - +0.4
451,843 + -2.2
451,853 - -1.6
451,896 + -1.8
451,961 + +2.2
451,971 + -3.3
452,010 + BBR_RS12045 0.11 -1.4
452,059 + BBR_RS12045 0.15 -2.5
452,071 + BBR_RS12045 0.16 +0.0

Or see this region's nucleotide sequence