Experiment: CDM1 without Phenylalanine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BBR_RS11475 and BBR_RS11480 overlap by 4 nucleotides BBR_RS11480 and BBR_RS11485 are separated by 474 nucleotides
BBR_RS11475: BBR_RS11475 - oxidoreductase, at 330,674 to 331,696
_RS11475
BBR_RS11480: BBR_RS11480 - glucose-6-phosphate dehydrogenase, at 331,693 to 333,231
_RS11480
BBR_RS11485: BBR_RS11485 - serine hydrolase, at 333,706 to 335,397
_RS11485
Position (kb) 331
332
333
334 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 330.696 kb on + strand at 330.696 kb on + strand at 330.698 kb on - strand at 330.714 kb on + strand at 330.714 kb on + strand at 330.722 kb on - strand at 332.761 kb on + strand, within BBR_RS11480 at 333.281 kb on - strand at 333.287 kb on + strand at 333.313 kb on - strand at 333.323 kb on - strand at 333.324 kb on + strand at 333.324 kb on + strand at 333.324 kb on + strand at 333.324 kb on + strand at 333.332 kb on - strand at 333.332 kb on - strand at 333.332 kb on - strand at 333.345 kb on - strand at 333.349 kb on + strand at 333.356 kb on - strand at 333.357 kb on - strand at 333.380 kb on + strand at 333.388 kb on - strand at 333.388 kb on - strand at 333.394 kb on + strand at 333.428 kb on + strand at 333.428 kb on + strand at 333.438 kb on - strand at 333.438 kb on - strand at 333.438 kb on - strand at 333.438 kb on - strand at 333.448 kb on + strand at 333.467 kb on - strand at 333.551 kb on + strand at 333.580 kb on - strand at 333.580 kb on - strand at 333.582 kb on + strand at 333.584 kb on + strand at 333.585 kb on - strand at 333.597 kb on + strand at 333.613 kb on - strand at 333.633 kb on - strand at 333.633 kb on - strand at 333.635 kb on + strand at 333.643 kb on - strand at 333.644 kb on - strand at 333.646 kb on + strand at 333.686 kb on + strand at 333.690 kb on + strand at 333.690 kb on + strand at 333.729 kb on + strand at 333.731 kb on - strand at 333.736 kb on - strand at 333.737 kb on - strand at 333.738 kb on + strand at 333.738 kb on + strand at 333.739 kb on - strand at 333.746 kb on - strand at 333.758 kb on - strand at 333.767 kb on + strand at 333.775 kb on - strand at 333.780 kb on - strand at 333.780 kb on - strand at 333.780 kb on - strand at 333.782 kb on + strand at 333.819 kb on + strand at 333.827 kb on - strand at 333.827 kb on - strand at 333.849 kb on + strand at 333.930 kb on - strand, within BBR_RS11485 at 333.932 kb on + strand, within BBR_RS11485 at 333.932 kb on + strand, within BBR_RS11485 at 333.932 kb on + strand, within BBR_RS11485 at 333.940 kb on - strand, within BBR_RS11485 at 333.940 kb on - strand, within BBR_RS11485 at 333.940 kb on - strand, within BBR_RS11485 at 333.940 kb on - strand, within BBR_RS11485 at 333.940 kb on - strand, within BBR_RS11485 at 333.940 kb on - strand, within BBR_RS11485 at 333.940 kb on - strand, within BBR_RS11485 at 333.942 kb on - strand, within BBR_RS11485 at 333.959 kb on + strand, within BBR_RS11485 at 333.977 kb on + strand, within BBR_RS11485 at 333.985 kb on - strand, within BBR_RS11485 at 333.985 kb on - strand, within BBR_RS11485 at 333.985 kb on - strand, within BBR_RS11485 at 333.987 kb on - strand, within BBR_RS11485 at 333.989 kb on - strand, within BBR_RS11485 at 334.010 kb on - strand, within BBR_RS11485 at 334.010 kb on - strand, within BBR_RS11485 at 334.012 kb on + strand, within BBR_RS11485 at 334.012 kb on + strand, within BBR_RS11485 at 334.012 kb on + strand, within BBR_RS11485 at 334.017 kb on + strand, within BBR_RS11485 at 334.020 kb on - strand, within BBR_RS11485 at 334.025 kb on - strand, within BBR_RS11485 at 334.025 kb on - strand, within BBR_RS11485 at 334.025 kb on - strand, within BBR_RS11485 at 334.057 kb on + strand, within BBR_RS11485 at 334.057 kb on + strand, within BBR_RS11485 at 334.124 kb on - strand, within BBR_RS11485 at 334.124 kb on - strand, within BBR_RS11485 at 334.129 kb on - strand, within BBR_RS11485 at 334.143 kb on + strand, within BBR_RS11485 at 334.182 kb on + strand, within BBR_RS11485 at 334.182 kb on + strand, within BBR_RS11485 at 334.182 kb on + strand, within BBR_RS11485 at 334.185 kb on + strand, within BBR_RS11485 at 334.190 kb on - strand, within BBR_RS11485 at 334.199 kb on - strand, within BBR_RS11485 at 334.214 kb on + strand, within BBR_RS11485 at 334.222 kb on - strand, within BBR_RS11485 at 334.222 kb on - strand, within BBR_RS11485 at 334.223 kb on - strand, within BBR_RS11485
Per-strain Table
Position Strand Gene LocusTag Fraction CDM1 without Phenylalanine remove 330,696 + -2.2 330,696 + -1.2 330,698 - +4.3 330,714 + +1.9 330,714 + +3.4 330,722 - +2.1 332,761 + BBR_RS11480 0.69 +1.8 333,281 - -0.2 333,287 + +0.6 333,313 - +0.3 333,323 - +0.7 333,324 + -0.7 333,324 + +4.0 333,324 + -1.2 333,324 + +1.7 333,332 - -0.7 333,332 - -2.1 333,332 - +1.6 333,345 - -1.8 333,349 + -0.5 333,356 - -1.1 333,357 - +2.8 333,380 + +1.8 333,388 - -3.7 333,388 - +4.5 333,394 + -2.5 333,428 + -1.2 333,428 + -2.7 333,438 - -2.9 333,438 - +1.1 333,438 - -1.9 333,438 - -2.1 333,448 + +1.6 333,467 - +5.5 333,551 + +1.1 333,580 - -1.9 333,580 - -2.5 333,582 + -2.8 333,584 + +1.8 333,585 - -2.8 333,597 + -1.5 333,613 - -3.5 333,633 - +1.0 333,633 - -1.9 333,635 + -2.6 333,643 - +0.1 333,644 - -2.6 333,646 + +0.7 333,686 + +1.6 333,690 + +1.7 333,690 + -0.2 333,729 + -0.5 333,731 - -0.7 333,736 - -1.7 333,737 - -1.9 333,738 + -0.1 333,738 + +3.6 333,739 - +1.2 333,746 - -0.1 333,758 - +2.1 333,767 + -1.5 333,775 - -0.1 333,780 - -1.7 333,780 - -0.0 333,780 - -0.5 333,782 + -3.0 333,819 + +0.9 333,827 - -1.8 333,827 - -2.5 333,849 + -2.4 333,930 - BBR_RS11485 0.13 -3.3 333,932 + BBR_RS11485 0.13 +1.5 333,932 + BBR_RS11485 0.13 -1.0 333,932 + BBR_RS11485 0.13 +0.5 333,940 - BBR_RS11485 0.14 -0.3 333,940 - BBR_RS11485 0.14 +1.5 333,940 - BBR_RS11485 0.14 +0.7 333,940 - BBR_RS11485 0.14 +2.9 333,940 - BBR_RS11485 0.14 -2.1 333,940 - BBR_RS11485 0.14 +0.9 333,940 - BBR_RS11485 0.14 -1.8 333,942 - BBR_RS11485 0.14 -0.6 333,959 + BBR_RS11485 0.15 -1.4 333,977 + BBR_RS11485 0.16 -2.6 333,985 - BBR_RS11485 0.16 +1.5 333,985 - BBR_RS11485 0.16 -1.5 333,985 - BBR_RS11485 0.16 -2.4 333,987 - BBR_RS11485 0.17 -0.6 333,989 - BBR_RS11485 0.17 -1.8 334,010 - BBR_RS11485 0.18 -3.9 334,010 - BBR_RS11485 0.18 +0.6 334,012 + BBR_RS11485 0.18 -2.3 334,012 + BBR_RS11485 0.18 -1.4 334,012 + BBR_RS11485 0.18 -0.8 334,017 + BBR_RS11485 0.18 -1.5 334,020 - BBR_RS11485 0.19 -2.7 334,025 - BBR_RS11485 0.19 -1.5 334,025 - BBR_RS11485 0.19 -1.1 334,025 - BBR_RS11485 0.19 -1.7 334,057 + BBR_RS11485 0.21 +3.5 334,057 + BBR_RS11485 0.21 -0.8 334,124 - BBR_RS11485 0.25 -1.8 334,124 - BBR_RS11485 0.25 +1.5 334,129 - BBR_RS11485 0.25 -0.6 334,143 + BBR_RS11485 0.26 -1.7 334,182 + BBR_RS11485 0.28 +0.5 334,182 + BBR_RS11485 0.28 -1.1 334,182 + BBR_RS11485 0.28 +0.0 334,185 + BBR_RS11485 0.28 -1.2 334,190 - BBR_RS11485 0.29 -1.9 334,199 - BBR_RS11485 0.29 +1.5 334,214 + BBR_RS11485 0.30 -1.5 334,222 - BBR_RS11485 0.30 +1.0 334,222 - BBR_RS11485 0.30 -1.4 334,223 - BBR_RS11485 0.31 +1.3
Or see this region's nucleotide sequence