Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_29680

Experiment: L-Glutamic (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO356_29670 and AO356_29675 are separated by 72 nucleotidesAO356_29675 and AO356_29680 are separated by 10 nucleotidesAO356_29680 and AO356_29685 are separated by 39 nucleotides AO356_29670: AO356_29670 - argininosuccinate lyase, at 6,902,083 to 6,903,510 _29670 AO356_29675: AO356_29675 - ABC transporter permease, at 6,903,583 to 6,904,461 _29675 AO356_29680: AO356_29680 - ectoine/hydroxyectoine ABC transporter ATP-binding protein EhuA, at 6,904,472 to 6,905,236 _29680 AO356_29685: AO356_29685 - ABC transporter substrate-binding protein, at 6,905,276 to 6,906,100 _29685 Position (kb) 6904 6905 6906Strain fitness (log2 ratio) -1 0 1at 6903.655 kb on + strandat 6903.767 kb on - strand, within AO356_29675at 6903.925 kb on + strand, within AO356_29675at 6903.926 kb on - strand, within AO356_29675at 6903.926 kb on - strand, within AO356_29675at 6903.928 kb on - strand, within AO356_29675at 6904.096 kb on + strand, within AO356_29675at 6904.227 kb on + strand, within AO356_29675at 6904.504 kb on + strandat 6904.508 kb on + strandat 6905.178 kb on + strandat 6905.181 kb on + strandat 6905.181 kb on + strandat 6905.181 kb on + strandat 6905.184 kb on + strandat 6905.454 kb on - strand, within AO356_29685at 6905.642 kb on + strand, within AO356_29685at 6905.906 kb on + strand, within AO356_29685at 6905.906 kb on + strand, within AO356_29685at 6905.906 kb on + strand, within AO356_29685at 6905.907 kb on - strand, within AO356_29685at 6905.907 kb on - strand, within AO356_29685at 6905.907 kb on - strand, within AO356_29685

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (C)
remove
6,903,655 + +0.6
6,903,767 - AO356_29675 0.21 -1.3
6,903,925 + AO356_29675 0.39 +0.6
6,903,926 - AO356_29675 0.39 +0.6
6,903,926 - AO356_29675 0.39 -0.5
6,903,928 - AO356_29675 0.39 +0.2
6,904,096 + AO356_29675 0.58 +0.1
6,904,227 + AO356_29675 0.73 -0.6
6,904,504 + +0.3
6,904,508 + -0.0
6,905,178 + -0.6
6,905,181 + +0.7
6,905,181 + -0.3
6,905,181 + +1.2
6,905,184 + +0.7
6,905,454 - AO356_29685 0.22 +0.6
6,905,642 + AO356_29685 0.44 +0.2
6,905,906 + AO356_29685 0.76 +0.5
6,905,906 + AO356_29685 0.76 -0.3
6,905,906 + AO356_29685 0.76 -0.2
6,905,907 - AO356_29685 0.76 -0.4
6,905,907 - AO356_29685 0.76 +0.1
6,905,907 - AO356_29685 0.76 -0.3

Or see this region's nucleotide sequence