Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_25320

Experiment: L-Glutamic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_25315 and AO356_25320 overlap by 29 nucleotidesAO356_25320 and AO356_25325 overlap by 4 nucleotides AO356_25315: AO356_25315 - cyclopropane-fatty-acyl-phospholipid synthase, at 5,728,132 to 5,729,394 _25315 AO356_25320: AO356_25320 - hypothetical protein, at 5,729,366 to 5,730,181 _25320 AO356_25325: AO356_25325 - FAD-dependent oxidoreductase, at 5,730,178 to 5,731,425 _25325 Position (kb) 5729 5730 5731Strain fitness (log2 ratio) -3 -2 -1 0 1at 5728.563 kb on - strand, within AO356_25315at 5728.622 kb on + strand, within AO356_25315at 5728.754 kb on + strand, within AO356_25315at 5728.754 kb on + strand, within AO356_25315at 5728.754 kb on + strand, within AO356_25315at 5728.754 kb on + strand, within AO356_25315at 5728.754 kb on + strand, within AO356_25315at 5728.754 kb on + strand, within AO356_25315at 5728.754 kb on + strand, within AO356_25315at 5728.755 kb on - strand, within AO356_25315at 5728.913 kb on + strand, within AO356_25315at 5728.965 kb on - strand, within AO356_25315at 5728.965 kb on - strand, within AO356_25315at 5728.977 kb on + strand, within AO356_25315at 5728.977 kb on + strand, within AO356_25315at 5729.147 kb on + strand, within AO356_25315at 5729.147 kb on + strand, within AO356_25315at 5729.147 kb on + strand, within AO356_25315at 5729.147 kb on + strand, within AO356_25315at 5729.147 kb on + strand, within AO356_25315at 5729.148 kb on - strand, within AO356_25315at 5729.148 kb on - strand, within AO356_25315at 5729.148 kb on - strand, within AO356_25315at 5729.148 kb on - strand, within AO356_25315at 5729.148 kb on - strand, within AO356_25315at 5729.425 kb on + strandat 5729.499 kb on + strand, within AO356_25320at 5729.499 kb on + strand, within AO356_25320at 5729.679 kb on + strand, within AO356_25320at 5729.769 kb on + strand, within AO356_25320at 5729.769 kb on + strand, within AO356_25320at 5729.769 kb on + strand, within AO356_25320at 5729.770 kb on - strand, within AO356_25320at 5729.770 kb on - strand, within AO356_25320at 5729.770 kb on - strand, within AO356_25320at 5729.794 kb on + strand, within AO356_25320at 5729.794 kb on + strand, within AO356_25320at 5729.794 kb on + strand, within AO356_25320at 5729.795 kb on - strand, within AO356_25320at 5729.797 kb on + strand, within AO356_25320at 5729.797 kb on + strand, within AO356_25320at 5730.093 kb on + strand, within AO356_25320at 5730.269 kb on + strandat 5730.269 kb on + strandat 5730.270 kb on - strandat 5730.270 kb on - strandat 5730.333 kb on - strand, within AO356_25325at 5730.333 kb on - strand, within AO356_25325at 5730.452 kb on + strand, within AO356_25325at 5730.453 kb on - strand, within AO356_25325at 5730.453 kb on - strand, within AO356_25325at 5730.494 kb on + strand, within AO356_25325at 5730.494 kb on + strand, within AO356_25325at 5730.783 kb on + strand, within AO356_25325at 5730.783 kb on + strand, within AO356_25325at 5730.784 kb on - strand, within AO356_25325at 5730.784 kb on - strand, within AO356_25325at 5730.784 kb on - strand, within AO356_25325at 5730.784 kb on - strand, within AO356_25325at 5730.784 kb on - strand, within AO356_25325at 5730.785 kb on + strand, within AO356_25325at 5730.786 kb on - strand, within AO356_25325at 5730.930 kb on + strand, within AO356_25325at 5730.930 kb on + strand, within AO356_25325at 5730.931 kb on - strand, within AO356_25325at 5730.941 kb on + strand, within AO356_25325at 5730.941 kb on + strand, within AO356_25325at 5730.942 kb on - strand, within AO356_25325at 5730.942 kb on - strand, within AO356_25325at 5730.983 kb on + strand, within AO356_25325at 5730.984 kb on - strand, within AO356_25325at 5731.139 kb on + strand, within AO356_25325at 5731.140 kb on - strand, within AO356_25325at 5731.140 kb on - strand, within AO356_25325at 5731.140 kb on - strand, within AO356_25325

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (C)
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5,728,563 - AO356_25315 0.34 -0.2
5,728,622 + AO356_25315 0.39 +0.4
5,728,754 + AO356_25315 0.49 -0.4
5,728,754 + AO356_25315 0.49 -0.3
5,728,754 + AO356_25315 0.49 +0.8
5,728,754 + AO356_25315 0.49 -0.1
5,728,754 + AO356_25315 0.49 -0.5
5,728,754 + AO356_25315 0.49 -0.3
5,728,754 + AO356_25315 0.49 +0.0
5,728,755 - AO356_25315 0.49 +0.6
5,728,913 + AO356_25315 0.62 +0.2
5,728,965 - AO356_25315 0.66 -0.3
5,728,965 - AO356_25315 0.66 -0.1
5,728,977 + AO356_25315 0.67 +0.0
5,728,977 + AO356_25315 0.67 +1.2
5,729,147 + AO356_25315 0.80 -1.1
5,729,147 + AO356_25315 0.80 +0.7
5,729,147 + AO356_25315 0.80 +0.3
5,729,147 + AO356_25315 0.80 -0.2
5,729,147 + AO356_25315 0.80 -0.2
5,729,148 - AO356_25315 0.80 -1.2
5,729,148 - AO356_25315 0.80 +0.4
5,729,148 - AO356_25315 0.80 +0.2
5,729,148 - AO356_25315 0.80 +0.5
5,729,148 - AO356_25315 0.80 +0.6
5,729,425 + -1.5
5,729,499 + AO356_25320 0.16 +0.3
5,729,499 + AO356_25320 0.16 -0.3
5,729,679 + AO356_25320 0.38 +0.2
5,729,769 + AO356_25320 0.49 +0.7
5,729,769 + AO356_25320 0.49 +0.3
5,729,769 + AO356_25320 0.49 -2.8
5,729,770 - AO356_25320 0.50 -0.1
5,729,770 - AO356_25320 0.50 -0.5
5,729,770 - AO356_25320 0.50 -0.3
5,729,794 + AO356_25320 0.52 +0.1
5,729,794 + AO356_25320 0.52 -0.0
5,729,794 + AO356_25320 0.52 -0.1
5,729,795 - AO356_25320 0.53 +0.1
5,729,797 + AO356_25320 0.53 -0.2
5,729,797 + AO356_25320 0.53 +0.4
5,730,093 + AO356_25320 0.89 -0.5
5,730,269 + -0.1
5,730,269 + +0.9
5,730,270 - +0.2
5,730,270 - -1.2
5,730,333 - AO356_25325 0.12 -0.1
5,730,333 - AO356_25325 0.12 +1.0
5,730,452 + AO356_25325 0.22 +0.9
5,730,453 - AO356_25325 0.22 +0.3
5,730,453 - AO356_25325 0.22 +0.1
5,730,494 + AO356_25325 0.25 -1.0
5,730,494 + AO356_25325 0.25 -0.4
5,730,783 + AO356_25325 0.48 +0.1
5,730,783 + AO356_25325 0.48 +0.1
5,730,784 - AO356_25325 0.49 -0.5
5,730,784 - AO356_25325 0.49 +0.6
5,730,784 - AO356_25325 0.49 +0.1
5,730,784 - AO356_25325 0.49 -1.6
5,730,784 - AO356_25325 0.49 +0.2
5,730,785 + AO356_25325 0.49 +0.1
5,730,786 - AO356_25325 0.49 +0.2
5,730,930 + AO356_25325 0.60 -0.5
5,730,930 + AO356_25325 0.60 -0.4
5,730,931 - AO356_25325 0.60 -0.8
5,730,941 + AO356_25325 0.61 -0.2
5,730,941 + AO356_25325 0.61 -0.2
5,730,942 - AO356_25325 0.61 -0.1
5,730,942 - AO356_25325 0.61 -0.7
5,730,983 + AO356_25325 0.65 -1.0
5,730,984 - AO356_25325 0.65 +1.3
5,731,139 + AO356_25325 0.77 +0.0
5,731,140 - AO356_25325 0.77 -0.3
5,731,140 - AO356_25325 0.77 -0.2
5,731,140 - AO356_25325 0.77 +0.4

Or see this region's nucleotide sequence