Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_15980

Experiment: L-Glutamic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_15965 and AO356_15970 are separated by 60 nucleotidesAO356_15970 and AO356_15975 are separated by 52 nucleotidesAO356_15975 and AO356_15980 overlap by 4 nucleotidesAO356_15980 and AO356_15985 are separated by 133 nucleotidesAO356_15985 and AO356_15990 are separated by 63 nucleotides AO356_15965: AO356_15965 - NADH dehydrogenase, at 3,612,576 to 3,613,874 _15965 AO356_15970: AO356_15970 - 50s ribosomal protein l13, at 3,613,935 to 3,614,108 _15970 AO356_15975: AO356_15975 - molybdenum cofactor sulfurase, at 3,614,161 to 3,614,688 _15975 AO356_15980: AO356_15980 - hypothetical protein, at 3,614,685 to 3,615,311 _15980 AO356_15985: AO356_15985 - hypothetical protein, at 3,615,445 to 3,616,131 _15985 AO356_15990: AO356_15990 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, at 3,616,195 to 3,616,410 _15990 Position (kb) 3614 3615 3616Strain fitness (log2 ratio) -2 -1 0 1at 3613.862 kb on + strandat 3613.862 kb on + strandat 3613.862 kb on + strandat 3613.862 kb on + strandat 3613.862 kb on + strandat 3613.862 kb on + strandat 3613.863 kb on - strandat 3613.863 kb on - strandat 3613.863 kb on - strandat 3613.863 kb on - strandat 3613.863 kb on - strandat 3613.863 kb on - strandat 3613.863 kb on - strandat 3613.880 kb on + strandat 3613.881 kb on - strandat 3613.881 kb on - strandat 3613.893 kb on + strandat 3613.938 kb on + strandat 3613.938 kb on + strandat 3613.938 kb on + strandat 3613.939 kb on - strandat 3613.948 kb on + strandat 3613.948 kb on + strandat 3614.062 kb on + strand, within AO356_15970at 3614.062 kb on + strand, within AO356_15970at 3614.062 kb on + strand, within AO356_15970at 3614.063 kb on - strand, within AO356_15970at 3614.063 kb on - strand, within AO356_15970at 3614.108 kb on + strandat 3614.108 kb on + strandat 3614.109 kb on - strandat 3614.109 kb on - strandat 3614.109 kb on - strandat 3614.124 kb on + strandat 3614.124 kb on + strandat 3614.124 kb on + strandat 3614.246 kb on - strand, within AO356_15975at 3614.279 kb on - strand, within AO356_15975at 3614.292 kb on + strand, within AO356_15975at 3614.293 kb on - strand, within AO356_15975at 3614.416 kb on + strand, within AO356_15975at 3614.416 kb on + strand, within AO356_15975at 3614.416 kb on + strand, within AO356_15975at 3614.416 kb on + strand, within AO356_15975at 3614.416 kb on + strand, within AO356_15975at 3614.416 kb on + strand, within AO356_15975at 3614.416 kb on + strand, within AO356_15975at 3614.416 kb on + strand, within AO356_15975at 3614.417 kb on - strand, within AO356_15975at 3614.417 kb on - strand, within AO356_15975at 3614.417 kb on - strand, within AO356_15975at 3614.417 kb on - strand, within AO356_15975at 3614.417 kb on - strand, within AO356_15975at 3614.417 kb on - strand, within AO356_15975at 3614.417 kb on - strand, within AO356_15975at 3614.417 kb on - strand, within AO356_15975at 3614.417 kb on - strand, within AO356_15975at 3614.418 kb on + strand, within AO356_15975at 3614.418 kb on + strand, within AO356_15975at 3614.418 kb on + strand, within AO356_15975at 3614.418 kb on + strand, within AO356_15975at 3614.418 kb on + strand, within AO356_15975at 3614.418 kb on + strand, within AO356_15975at 3614.418 kb on + strand, within AO356_15975at 3614.418 kb on + strand, within AO356_15975at 3614.418 kb on + strand, within AO356_15975at 3614.418 kb on + strand, within AO356_15975at 3614.418 kb on + strand, within AO356_15975at 3614.418 kb on + strand, within AO356_15975at 3614.418 kb on + strand, within AO356_15975at 3614.419 kb on - strand, within AO356_15975at 3614.419 kb on - strand, within AO356_15975at 3614.419 kb on - strand, within AO356_15975at 3614.419 kb on - strand, within AO356_15975at 3614.419 kb on - strand, within AO356_15975at 3614.419 kb on - strand, within AO356_15975at 3614.419 kb on - strand, within AO356_15975at 3614.929 kb on + strand, within AO356_15980at 3614.930 kb on - strand, within AO356_15980at 3614.930 kb on - strand, within AO356_15980at 3614.930 kb on - strand, within AO356_15980at 3614.930 kb on - strand, within AO356_15980at 3614.930 kb on - strand, within AO356_15980at 3615.291 kb on + strandat 3615.291 kb on + strandat 3615.292 kb on - strandat 3615.292 kb on - strandat 3615.292 kb on - strandat 3615.292 kb on - strandat 3615.323 kb on + strandat 3615.323 kb on + strandat 3615.324 kb on - strandat 3615.362 kb on + strandat 3615.386 kb on + strandat 3615.386 kb on + strandat 3615.386 kb on + strandat 3615.386 kb on + strandat 3615.386 kb on + strandat 3615.387 kb on - strandat 3615.387 kb on - strandat 3615.387 kb on - strandat 3615.387 kb on - strandat 3615.387 kb on - strandat 3615.387 kb on - strandat 3615.387 kb on - strandat 3615.387 kb on - strandat 3615.404 kb on + strandat 3615.404 kb on + strandat 3615.404 kb on + strandat 3615.405 kb on - strandat 3615.405 kb on - strandat 3615.439 kb on + strandat 3615.440 kb on - strandat 3615.440 kb on - strandat 3615.440 kb on - strandat 3615.464 kb on + strandat 3615.464 kb on + strandat 3615.465 kb on - strandat 3615.499 kb on + strandat 3615.499 kb on + strandat 3615.499 kb on + strandat 3615.499 kb on + strandat 3615.500 kb on - strandat 3615.646 kb on + strand, within AO356_15985at 3615.646 kb on + strand, within AO356_15985at 3615.862 kb on + strand, within AO356_15985at 3615.862 kb on + strand, within AO356_15985at 3615.862 kb on + strand, within AO356_15985at 3615.862 kb on + strand, within AO356_15985at 3615.862 kb on + strand, within AO356_15985at 3615.862 kb on + strand, within AO356_15985at 3615.862 kb on + strand, within AO356_15985at 3615.862 kb on + strand, within AO356_15985at 3615.862 kb on + strand, within AO356_15985at 3615.863 kb on - strand, within AO356_15985at 3615.863 kb on - strand, within AO356_15985at 3615.863 kb on - strand, within AO356_15985at 3615.863 kb on - strand, within AO356_15985at 3615.863 kb on - strand, within AO356_15985at 3615.863 kb on - strand, within AO356_15985at 3615.863 kb on - strand, within AO356_15985at 3615.863 kb on - strand, within AO356_15985at 3615.863 kb on - strand, within AO356_15985at 3615.863 kb on - strand, within AO356_15985at 3615.863 kb on - strand, within AO356_15985at 3615.864 kb on + strand, within AO356_15985at 3615.864 kb on + strand, within AO356_15985at 3615.864 kb on + strand, within AO356_15985at 3615.864 kb on + strand, within AO356_15985at 3615.865 kb on - strand, within AO356_15985at 3615.865 kb on - strand, within AO356_15985at 3615.865 kb on - strand, within AO356_15985at 3615.865 kb on - strand, within AO356_15985at 3615.865 kb on - strand, within AO356_15985at 3615.865 kb on - strand, within AO356_15985at 3615.940 kb on + strand, within AO356_15985at 3615.965 kb on - strand, within AO356_15985at 3616.093 kb on + strandat 3616.093 kb on + strandat 3616.094 kb on - strandat 3616.094 kb on - strandat 3616.094 kb on - strandat 3616.094 kb on - strandat 3616.188 kb on + strandat 3616.188 kb on + strandat 3616.188 kb on + strandat 3616.189 kb on - strandat 3616.204 kb on + strandat 3616.204 kb on + strandat 3616.204 kb on + strandat 3616.205 kb on - strandat 3616.205 kb on - strandat 3616.205 kb on - strandat 3616.205 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (C)
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3,613,862 + +0.2
3,613,862 + +0.2
3,613,862 + +0.5
3,613,862 + +0.6
3,613,862 + -1.2
3,613,862 + -0.0
3,613,863 - +0.5
3,613,863 - +0.4
3,613,863 - +0.1
3,613,863 - -1.3
3,613,863 - +0.6
3,613,863 - +0.2
3,613,863 - +0.4
3,613,880 + +0.7
3,613,881 - +0.3
3,613,881 - +0.1
3,613,893 + +0.5
3,613,938 + -0.3
3,613,938 + +0.2
3,613,938 + -1.4
3,613,939 - -0.6
3,613,948 + -0.1
3,613,948 + -0.1
3,614,062 + AO356_15970 0.73 -0.4
3,614,062 + AO356_15970 0.73 +1.7
3,614,062 + AO356_15970 0.73 -0.0
3,614,063 - AO356_15970 0.74 +0.3
3,614,063 - AO356_15970 0.74 +1.2
3,614,108 + +0.8
3,614,108 + -0.3
3,614,109 - +0.3
3,614,109 - -0.7
3,614,109 - +0.2
3,614,124 + +0.2
3,614,124 + +0.8
3,614,124 + -1.2
3,614,246 - AO356_15975 0.16 +0.4
3,614,279 - AO356_15975 0.22 +0.6
3,614,292 + AO356_15975 0.25 +0.0
3,614,293 - AO356_15975 0.25 -0.6
3,614,416 + AO356_15975 0.48 -1.2
3,614,416 + AO356_15975 0.48 +0.6
3,614,416 + AO356_15975 0.48 -0.1
3,614,416 + AO356_15975 0.48 -0.6
3,614,416 + AO356_15975 0.48 -0.3
3,614,416 + AO356_15975 0.48 -0.1
3,614,416 + AO356_15975 0.48 +0.7
3,614,416 + AO356_15975 0.48 +0.3
3,614,417 - AO356_15975 0.48 +0.1
3,614,417 - AO356_15975 0.48 -0.1
3,614,417 - AO356_15975 0.48 -0.1
3,614,417 - AO356_15975 0.48 -0.6
3,614,417 - AO356_15975 0.48 -0.2
3,614,417 - AO356_15975 0.48 +0.6
3,614,417 - AO356_15975 0.48 +0.1
3,614,417 - AO356_15975 0.48 -0.1
3,614,417 - AO356_15975 0.48 +1.3
3,614,418 + AO356_15975 0.49 +1.0
3,614,418 + AO356_15975 0.49 -0.2
3,614,418 + AO356_15975 0.49 -0.7
3,614,418 + AO356_15975 0.49 -0.6
3,614,418 + AO356_15975 0.49 +0.4
3,614,418 + AO356_15975 0.49 +0.3
3,614,418 + AO356_15975 0.49 +0.5
3,614,418 + AO356_15975 0.49 +0.4
3,614,418 + AO356_15975 0.49 -1.0
3,614,418 + AO356_15975 0.49 +0.7
3,614,418 + AO356_15975 0.49 +0.6
3,614,418 + AO356_15975 0.49 +0.1
3,614,418 + AO356_15975 0.49 -0.5
3,614,419 - AO356_15975 0.49 +0.9
3,614,419 - AO356_15975 0.49 +0.9
3,614,419 - AO356_15975 0.49 +0.6
3,614,419 - AO356_15975 0.49 +0.2
3,614,419 - AO356_15975 0.49 -0.0
3,614,419 - AO356_15975 0.49 -0.5
3,614,419 - AO356_15975 0.49 +0.8
3,614,929 + AO356_15980 0.39 -0.5
3,614,930 - AO356_15980 0.39 -1.6
3,614,930 - AO356_15980 0.39 -0.9
3,614,930 - AO356_15980 0.39 +0.0
3,614,930 - AO356_15980 0.39 +0.3
3,614,930 - AO356_15980 0.39 +0.3
3,615,291 + -0.2
3,615,291 + +0.5
3,615,292 - +1.6
3,615,292 - +1.0
3,615,292 - -1.3
3,615,292 - -0.0
3,615,323 + +0.3
3,615,323 + +0.4
3,615,324 - +0.3
3,615,362 + -0.6
3,615,386 + -0.8
3,615,386 + +0.0
3,615,386 + -0.2
3,615,386 + +1.1
3,615,386 + -1.0
3,615,387 - +0.6
3,615,387 - +0.5
3,615,387 - +0.4
3,615,387 - +0.0
3,615,387 - -0.4
3,615,387 - +0.2
3,615,387 - +0.6
3,615,387 - +0.2
3,615,404 + +0.3
3,615,404 + -0.4
3,615,404 + -0.3
3,615,405 - -0.1
3,615,405 - -0.5
3,615,439 + +0.2
3,615,440 - +0.1
3,615,440 - +0.7
3,615,440 - -0.5
3,615,464 + +0.8
3,615,464 + -0.1
3,615,465 - -0.1
3,615,499 + +0.2
3,615,499 + +0.6
3,615,499 + +0.8
3,615,499 + -1.4
3,615,500 - +0.3
3,615,646 + AO356_15985 0.29 +0.9
3,615,646 + AO356_15985 0.29 -1.2
3,615,862 + AO356_15985 0.61 +0.6
3,615,862 + AO356_15985 0.61 -0.8
3,615,862 + AO356_15985 0.61 -0.1
3,615,862 + AO356_15985 0.61 +0.8
3,615,862 + AO356_15985 0.61 +1.0
3,615,862 + AO356_15985 0.61 -0.3
3,615,862 + AO356_15985 0.61 +0.5
3,615,862 + AO356_15985 0.61 -0.5
3,615,862 + AO356_15985 0.61 +0.8
3,615,863 - AO356_15985 0.61 +0.0
3,615,863 - AO356_15985 0.61 -0.2
3,615,863 - AO356_15985 0.61 +0.5
3,615,863 - AO356_15985 0.61 +0.4
3,615,863 - AO356_15985 0.61 -0.5
3,615,863 - AO356_15985 0.61 -0.2
3,615,863 - AO356_15985 0.61 +0.5
3,615,863 - AO356_15985 0.61 -0.1
3,615,863 - AO356_15985 0.61 +0.5
3,615,863 - AO356_15985 0.61 -0.4
3,615,863 - AO356_15985 0.61 +0.7
3,615,864 + AO356_15985 0.61 -0.1
3,615,864 + AO356_15985 0.61 -0.1
3,615,864 + AO356_15985 0.61 +0.7
3,615,864 + AO356_15985 0.61 -0.8
3,615,865 - AO356_15985 0.61 -0.3
3,615,865 - AO356_15985 0.61 +0.3
3,615,865 - AO356_15985 0.61 -0.2
3,615,865 - AO356_15985 0.61 +0.6
3,615,865 - AO356_15985 0.61 -0.2
3,615,865 - AO356_15985 0.61 +1.5
3,615,940 + AO356_15985 0.72 +0.3
3,615,965 - AO356_15985 0.76 -0.4
3,616,093 + +0.1
3,616,093 + -2.1
3,616,094 - -0.5
3,616,094 - +0.0
3,616,094 - +1.1
3,616,094 - +1.1
3,616,188 + +1.5
3,616,188 + -0.6
3,616,188 + +0.9
3,616,189 - +0.3
3,616,204 + +1.0
3,616,204 + +1.2
3,616,204 + +0.8
3,616,205 - -0.9
3,616,205 - -0.2
3,616,205 - +0.4
3,616,205 - -0.1

Or see this region's nucleotide sequence