Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_12450

Experiment: L-Glutamic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_12445 and AO356_12450 overlap by 11 nucleotidesAO356_12450 and AO356_12455 are separated by 143 nucleotidesAO356_12455 and AO356_12460 are separated by 3 nucleotides AO356_12445: AO356_12445 - fatty acid desaturase, at 2,843,653 to 2,844,627 _12445 AO356_12450: AO356_12450 - hypothetical protein, at 2,844,617 to 2,845,516 _12450 AO356_12455: AO356_12455 - hypothetical protein, at 2,845,660 to 2,846,376 _12455 AO356_12460: AO356_12460 - hypothetical protein, at 2,846,380 to 2,846,610 _12460 Position (kb) 2844 2845 2846Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2843.707 kb on + strandat 2843.707 kb on + strandat 2843.708 kb on - strandat 2843.708 kb on - strandat 2843.722 kb on + strandat 2843.722 kb on + strandat 2843.722 kb on + strandat 2843.722 kb on + strandat 2843.722 kb on + strandat 2843.722 kb on + strandat 2843.722 kb on + strandat 2843.722 kb on + strandat 2843.722 kb on + strandat 2843.723 kb on - strandat 2843.723 kb on - strandat 2843.723 kb on - strandat 2843.723 kb on - strandat 2843.723 kb on - strandat 2843.723 kb on - strandat 2843.723 kb on - strandat 2843.723 kb on - strandat 2843.723 kb on - strandat 2843.723 kb on - strandat 2843.776 kb on + strand, within AO356_12445at 2843.776 kb on + strand, within AO356_12445at 2843.777 kb on - strand, within AO356_12445at 2843.777 kb on - strand, within AO356_12445at 2843.777 kb on - strand, within AO356_12445at 2843.777 kb on - strand, within AO356_12445at 2843.892 kb on + strand, within AO356_12445at 2843.893 kb on - strand, within AO356_12445at 2843.893 kb on - strand, within AO356_12445at 2843.893 kb on - strand, within AO356_12445at 2843.959 kb on + strand, within AO356_12445at 2843.959 kb on + strand, within AO356_12445at 2843.959 kb on + strand, within AO356_12445at 2843.959 kb on + strand, within AO356_12445at 2843.960 kb on - strand, within AO356_12445at 2844.028 kb on + strand, within AO356_12445at 2844.028 kb on + strand, within AO356_12445at 2844.028 kb on + strand, within AO356_12445at 2844.028 kb on + strand, within AO356_12445at 2844.028 kb on + strand, within AO356_12445at 2844.029 kb on - strand, within AO356_12445at 2844.029 kb on - strand, within AO356_12445at 2844.031 kb on + strand, within AO356_12445at 2844.031 kb on + strand, within AO356_12445at 2844.031 kb on + strand, within AO356_12445at 2844.031 kb on + strand, within AO356_12445at 2844.031 kb on + strand, within AO356_12445at 2844.031 kb on + strand, within AO356_12445at 2844.031 kb on + strand, within AO356_12445at 2844.032 kb on - strand, within AO356_12445at 2844.032 kb on - strand, within AO356_12445at 2844.032 kb on - strand, within AO356_12445at 2844.032 kb on - strand, within AO356_12445at 2844.032 kb on - strand, within AO356_12445at 2844.032 kb on - strand, within AO356_12445at 2844.032 kb on - strand, within AO356_12445at 2844.104 kb on + strand, within AO356_12445at 2844.104 kb on + strand, within AO356_12445at 2844.104 kb on + strand, within AO356_12445at 2844.104 kb on + strand, within AO356_12445at 2844.105 kb on - strand, within AO356_12445at 2844.105 kb on - strand, within AO356_12445at 2844.133 kb on + strand, within AO356_12445at 2844.133 kb on + strand, within AO356_12445at 2844.133 kb on + strand, within AO356_12445at 2844.134 kb on - strand, within AO356_12445at 2844.134 kb on - strand, within AO356_12445at 2844.134 kb on - strand, within AO356_12445at 2844.247 kb on + strand, within AO356_12445at 2844.247 kb on + strand, within AO356_12445at 2844.247 kb on + strand, within AO356_12445at 2844.248 kb on - strand, within AO356_12445at 2844.248 kb on - strand, within AO356_12445at 2844.248 kb on - strand, within AO356_12445at 2844.248 kb on - strand, within AO356_12445at 2844.248 kb on - strand, within AO356_12445at 2844.248 kb on - strand, within AO356_12445at 2844.248 kb on - strand, within AO356_12445at 2844.256 kb on + strand, within AO356_12445at 2844.280 kb on - strand, within AO356_12445at 2844.280 kb on - strand, within AO356_12445at 2844.505 kb on + strand, within AO356_12445at 2844.505 kb on + strand, within AO356_12445at 2844.506 kb on - strand, within AO356_12445at 2844.506 kb on - strand, within AO356_12445at 2844.506 kb on - strand, within AO356_12445at 2844.506 kb on - strand, within AO356_12445at 2844.542 kb on + strandat 2844.581 kb on + strandat 2844.593 kb on + strandat 2844.593 kb on + strandat 2844.593 kb on + strandat 2844.593 kb on + strandat 2844.594 kb on - strandat 2844.594 kb on - strandat 2844.594 kb on - strandat 2844.594 kb on - strandat 2844.625 kb on + strandat 2844.625 kb on + strandat 2844.625 kb on + strandat 2844.625 kb on + strandat 2844.625 kb on + strandat 2844.625 kb on + strandat 2844.625 kb on + strandat 2844.626 kb on - strandat 2844.626 kb on - strandat 2844.626 kb on - strandat 2844.626 kb on - strandat 2844.643 kb on + strandat 2844.643 kb on + strandat 2844.643 kb on + strandat 2844.644 kb on - strandat 2844.671 kb on - strandat 2844.671 kb on - strandat 2844.694 kb on + strandat 2844.695 kb on - strandat 2844.741 kb on + strand, within AO356_12450at 2844.741 kb on + strand, within AO356_12450at 2844.742 kb on - strand, within AO356_12450at 2844.742 kb on - strand, within AO356_12450at 2844.891 kb on - strand, within AO356_12450at 2844.960 kb on + strand, within AO356_12450at 2844.960 kb on + strand, within AO356_12450at 2844.961 kb on - strand, within AO356_12450at 2844.961 kb on - strand, within AO356_12450at 2845.190 kb on + strand, within AO356_12450at 2845.190 kb on + strand, within AO356_12450at 2845.190 kb on + strand, within AO356_12450at 2845.190 kb on + strand, within AO356_12450at 2845.190 kb on + strand, within AO356_12450at 2845.190 kb on + strand, within AO356_12450at 2845.190 kb on + strand, within AO356_12450at 2845.191 kb on - strand, within AO356_12450at 2845.191 kb on - strand, within AO356_12450at 2845.191 kb on - strand, within AO356_12450at 2845.191 kb on - strand, within AO356_12450at 2845.191 kb on - strand, within AO356_12450at 2845.191 kb on - strand, within AO356_12450at 2845.322 kb on + strand, within AO356_12450at 2845.322 kb on + strand, within AO356_12450at 2845.322 kb on + strand, within AO356_12450at 2845.322 kb on + strand, within AO356_12450at 2845.323 kb on - strand, within AO356_12450at 2845.323 kb on - strand, within AO356_12450at 2845.323 kb on - strand, within AO356_12450at 2845.424 kb on + strand, within AO356_12450at 2845.425 kb on - strand, within AO356_12450at 2845.562 kb on + strandat 2845.562 kb on + strandat 2845.563 kb on - strandat 2845.563 kb on - strandat 2845.563 kb on - strandat 2845.568 kb on + strandat 2845.568 kb on + strandat 2845.569 kb on - strandat 2845.569 kb on - strandat 2845.569 kb on - strandat 2845.569 kb on - strandat 2845.569 kb on - strandat 2845.573 kb on + strandat 2845.574 kb on - strandat 2845.688 kb on + strandat 2845.688 kb on + strandat 2845.688 kb on + strandat 2845.688 kb on + strandat 2845.688 kb on + strandat 2845.688 kb on + strandat 2845.688 kb on + strandat 2845.688 kb on + strandat 2845.689 kb on - strandat 2845.689 kb on - strandat 2845.689 kb on - strandat 2845.689 kb on - strandat 2845.689 kb on - strandat 2845.831 kb on + strand, within AO356_12455at 2845.855 kb on + strand, within AO356_12455at 2845.870 kb on + strand, within AO356_12455at 2845.870 kb on + strand, within AO356_12455at 2845.871 kb on - strand, within AO356_12455at 2845.871 kb on - strand, within AO356_12455at 2845.871 kb on - strand, within AO356_12455at 2845.871 kb on - strand, within AO356_12455at 2845.871 kb on - strand, within AO356_12455at 2845.871 kb on - strand, within AO356_12455at 2845.871 kb on - strand, within AO356_12455at 2845.871 kb on - strand, within AO356_12455at 2845.871 kb on - strand, within AO356_12455at 2845.987 kb on + strand, within AO356_12455at 2845.987 kb on + strand, within AO356_12455at 2845.987 kb on + strand, within AO356_12455at 2845.987 kb on + strand, within AO356_12455at 2845.987 kb on + strand, within AO356_12455at 2845.987 kb on + strand, within AO356_12455at 2845.987 kb on + strand, within AO356_12455at 2845.987 kb on + strand, within AO356_12455at 2845.987 kb on + strand, within AO356_12455at 2845.987 kb on + strand, within AO356_12455at 2845.987 kb on + strand, within AO356_12455at 2845.987 kb on + strand, within AO356_12455at 2845.988 kb on - strand, within AO356_12455at 2845.988 kb on - strand, within AO356_12455at 2845.988 kb on - strand, within AO356_12455at 2845.988 kb on - strand, within AO356_12455at 2845.988 kb on - strand, within AO356_12455at 2845.988 kb on - strand, within AO356_12455at 2845.988 kb on - strand, within AO356_12455at 2845.988 kb on - strand, within AO356_12455at 2845.988 kb on - strand, within AO356_12455at 2846.131 kb on + strand, within AO356_12455at 2846.131 kb on + strand, within AO356_12455at 2846.131 kb on + strand, within AO356_12455at 2846.131 kb on + strand, within AO356_12455at 2846.131 kb on + strand, within AO356_12455at 2846.132 kb on - strand, within AO356_12455at 2846.132 kb on - strand, within AO356_12455at 2846.132 kb on - strand, within AO356_12455at 2846.132 kb on - strand, within AO356_12455at 2846.132 kb on - strand, within AO356_12455at 2846.132 kb on - strand, within AO356_12455at 2846.265 kb on + strand, within AO356_12455at 2846.265 kb on + strand, within AO356_12455at 2846.265 kb on + strand, within AO356_12455at 2846.266 kb on - strand, within AO356_12455at 2846.266 kb on - strand, within AO356_12455at 2846.266 kb on - strand, within AO356_12455at 2846.350 kb on - strandat 2846.429 kb on + strand, within AO356_12460at 2846.429 kb on + strand, within AO356_12460at 2846.429 kb on + strand, within AO356_12460at 2846.429 kb on + strand, within AO356_12460at 2846.430 kb on - strand, within AO356_12460at 2846.430 kb on - strand, within AO356_12460at 2846.430 kb on - strand, within AO356_12460at 2846.447 kb on + strand, within AO356_12460at 2846.447 kb on + strand, within AO356_12460at 2846.447 kb on + strand, within AO356_12460at 2846.448 kb on - strand, within AO356_12460at 2846.448 kb on - strand, within AO356_12460

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (C)
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2,843,707 + +0.0
2,843,707 + -0.2
2,843,708 - -0.2
2,843,708 - -0.1
2,843,722 + +0.2
2,843,722 + -0.2
2,843,722 + -1.2
2,843,722 + +0.7
2,843,722 + -0.0
2,843,722 + -0.2
2,843,722 + +0.5
2,843,722 + +1.4
2,843,722 + -0.2
2,843,723 - -1.1
2,843,723 - +0.2
2,843,723 - -0.8
2,843,723 - -0.9
2,843,723 - +0.5
2,843,723 - -0.1
2,843,723 - +0.3
2,843,723 - -0.1
2,843,723 - -0.2
2,843,723 - -2.1
2,843,776 + AO356_12445 0.13 -0.3
2,843,776 + AO356_12445 0.13 -0.1
2,843,777 - AO356_12445 0.13 +0.1
2,843,777 - AO356_12445 0.13 +0.2
2,843,777 - AO356_12445 0.13 +0.8
2,843,777 - AO356_12445 0.13 +0.5
2,843,892 + AO356_12445 0.25 -0.5
2,843,893 - AO356_12445 0.25 +0.9
2,843,893 - AO356_12445 0.25 +0.0
2,843,893 - AO356_12445 0.25 +1.4
2,843,959 + AO356_12445 0.31 +0.3
2,843,959 + AO356_12445 0.31 -0.0
2,843,959 + AO356_12445 0.31 -2.2
2,843,959 + AO356_12445 0.31 +0.8
2,843,960 - AO356_12445 0.31 +0.0
2,844,028 + AO356_12445 0.38 +1.0
2,844,028 + AO356_12445 0.38 -0.3
2,844,028 + AO356_12445 0.38 -2.7
2,844,028 + AO356_12445 0.38 -0.0
2,844,028 + AO356_12445 0.38 -0.4
2,844,029 - AO356_12445 0.39 +0.1
2,844,029 - AO356_12445 0.39 +0.9
2,844,031 + AO356_12445 0.39 +0.2
2,844,031 + AO356_12445 0.39 +0.6
2,844,031 + AO356_12445 0.39 -1.0
2,844,031 + AO356_12445 0.39 +0.3
2,844,031 + AO356_12445 0.39 +0.7
2,844,031 + AO356_12445 0.39 +1.1
2,844,031 + AO356_12445 0.39 +0.0
2,844,032 - AO356_12445 0.39 -0.3
2,844,032 - AO356_12445 0.39 -0.2
2,844,032 - AO356_12445 0.39 -0.5
2,844,032 - AO356_12445 0.39 +0.4
2,844,032 - AO356_12445 0.39 +0.1
2,844,032 - AO356_12445 0.39 -0.3
2,844,032 - AO356_12445 0.39 +0.5
2,844,104 + AO356_12445 0.46 +0.4
2,844,104 + AO356_12445 0.46 -0.2
2,844,104 + AO356_12445 0.46 -0.5
2,844,104 + AO356_12445 0.46 +0.3
2,844,105 - AO356_12445 0.46 -0.8
2,844,105 - AO356_12445 0.46 -0.9
2,844,133 + AO356_12445 0.49 +0.6
2,844,133 + AO356_12445 0.49 +0.0
2,844,133 + AO356_12445 0.49 -0.1
2,844,134 - AO356_12445 0.49 +0.0
2,844,134 - AO356_12445 0.49 +0.8
2,844,134 - AO356_12445 0.49 +0.1
2,844,247 + AO356_12445 0.61 -0.0
2,844,247 + AO356_12445 0.61 +0.6
2,844,247 + AO356_12445 0.61 +1.1
2,844,248 - AO356_12445 0.61 +0.0
2,844,248 - AO356_12445 0.61 +1.3
2,844,248 - AO356_12445 0.61 -1.7
2,844,248 - AO356_12445 0.61 -1.0
2,844,248 - AO356_12445 0.61 -0.2
2,844,248 - AO356_12445 0.61 -0.6
2,844,248 - AO356_12445 0.61 +0.1
2,844,256 + AO356_12445 0.62 +0.2
2,844,280 - AO356_12445 0.64 +0.2
2,844,280 - AO356_12445 0.64 -0.5
2,844,505 + AO356_12445 0.87 +0.4
2,844,505 + AO356_12445 0.87 -1.1
2,844,506 - AO356_12445 0.87 -0.6
2,844,506 - AO356_12445 0.87 -0.7
2,844,506 - AO356_12445 0.87 -0.4
2,844,506 - AO356_12445 0.87 -0.7
2,844,542 + +0.2
2,844,581 + +0.3
2,844,593 + +0.0
2,844,593 + -1.2
2,844,593 + -0.8
2,844,593 + +0.4
2,844,594 - -1.2
2,844,594 - -1.2
2,844,594 - +1.1
2,844,594 - -1.9
2,844,625 + -1.1
2,844,625 + -0.4
2,844,625 + -0.2
2,844,625 + -0.1
2,844,625 + -1.2
2,844,625 + -0.2
2,844,625 + +0.0
2,844,626 - -0.7
2,844,626 - -0.4
2,844,626 - -0.7
2,844,626 - -0.6
2,844,643 + -0.5
2,844,643 + -1.3
2,844,643 + -0.6
2,844,644 - -2.0
2,844,671 - -1.0
2,844,671 - +0.4
2,844,694 + -0.4
2,844,695 - -1.3
2,844,741 + AO356_12450 0.14 -0.1
2,844,741 + AO356_12450 0.14 -1.2
2,844,742 - AO356_12450 0.14 -0.3
2,844,742 - AO356_12450 0.14 -1.0
2,844,891 - AO356_12450 0.30 -0.4
2,844,960 + AO356_12450 0.38 +0.0
2,844,960 + AO356_12450 0.38 -1.4
2,844,961 - AO356_12450 0.38 -3.1
2,844,961 - AO356_12450 0.38 -2.3
2,845,190 + AO356_12450 0.64 -0.5
2,845,190 + AO356_12450 0.64 +0.1
2,845,190 + AO356_12450 0.64 -0.6
2,845,190 + AO356_12450 0.64 -0.9
2,845,190 + AO356_12450 0.64 -1.1
2,845,190 + AO356_12450 0.64 +0.3
2,845,190 + AO356_12450 0.64 -1.8
2,845,191 - AO356_12450 0.64 -3.0
2,845,191 - AO356_12450 0.64 -1.0
2,845,191 - AO356_12450 0.64 -0.7
2,845,191 - AO356_12450 0.64 -2.0
2,845,191 - AO356_12450 0.64 -1.2
2,845,191 - AO356_12450 0.64 -1.2
2,845,322 + AO356_12450 0.78 -0.0
2,845,322 + AO356_12450 0.78 +0.8
2,845,322 + AO356_12450 0.78 +0.1
2,845,322 + AO356_12450 0.78 -0.9
2,845,323 - AO356_12450 0.78 +1.0
2,845,323 - AO356_12450 0.78 -1.2
2,845,323 - AO356_12450 0.78 -1.8
2,845,424 + AO356_12450 0.90 -0.6
2,845,425 - AO356_12450 0.90 -1.1
2,845,562 + -0.5
2,845,562 + +0.4
2,845,563 - +0.2
2,845,563 - -0.1
2,845,563 - +0.3
2,845,568 + -0.4
2,845,568 + +0.2
2,845,569 - +0.1
2,845,569 - +1.6
2,845,569 - +0.5
2,845,569 - -1.1
2,845,569 - +0.3
2,845,573 + +0.2
2,845,574 - -0.9
2,845,688 + -0.4
2,845,688 + -0.4
2,845,688 + +0.3
2,845,688 + +0.7
2,845,688 + +0.7
2,845,688 + +0.3
2,845,688 + +0.5
2,845,688 + +0.3
2,845,689 - -0.1
2,845,689 - +1.2
2,845,689 - -0.1
2,845,689 - -1.9
2,845,689 - +0.2
2,845,831 + AO356_12455 0.24 +0.2
2,845,855 + AO356_12455 0.27 -1.2
2,845,870 + AO356_12455 0.29 +0.1
2,845,870 + AO356_12455 0.29 +1.1
2,845,871 - AO356_12455 0.29 +0.1
2,845,871 - AO356_12455 0.29 +0.4
2,845,871 - AO356_12455 0.29 +0.8
2,845,871 - AO356_12455 0.29 -0.3
2,845,871 - AO356_12455 0.29 -0.3
2,845,871 - AO356_12455 0.29 -0.0
2,845,871 - AO356_12455 0.29 +0.1
2,845,871 - AO356_12455 0.29 +0.5
2,845,871 - AO356_12455 0.29 +0.2
2,845,987 + AO356_12455 0.46 +2.0
2,845,987 + AO356_12455 0.46 +0.3
2,845,987 + AO356_12455 0.46 +0.3
2,845,987 + AO356_12455 0.46 +0.3
2,845,987 + AO356_12455 0.46 +0.1
2,845,987 + AO356_12455 0.46 +1.2
2,845,987 + AO356_12455 0.46 -0.4
2,845,987 + AO356_12455 0.46 +0.7
2,845,987 + AO356_12455 0.46 +0.6
2,845,987 + AO356_12455 0.46 +0.2
2,845,987 + AO356_12455 0.46 +0.3
2,845,987 + AO356_12455 0.46 +0.3
2,845,988 - AO356_12455 0.46 +0.1
2,845,988 - AO356_12455 0.46 +0.3
2,845,988 - AO356_12455 0.46 -0.5
2,845,988 - AO356_12455 0.46 +0.8
2,845,988 - AO356_12455 0.46 +0.3
2,845,988 - AO356_12455 0.46 +0.5
2,845,988 - AO356_12455 0.46 +0.8
2,845,988 - AO356_12455 0.46 +0.1
2,845,988 - AO356_12455 0.46 -0.1
2,846,131 + AO356_12455 0.66 +0.8
2,846,131 + AO356_12455 0.66 -1.6
2,846,131 + AO356_12455 0.66 +0.7
2,846,131 + AO356_12455 0.66 +0.1
2,846,131 + AO356_12455 0.66 +1.1
2,846,132 - AO356_12455 0.66 +0.4
2,846,132 - AO356_12455 0.66 +0.4
2,846,132 - AO356_12455 0.66 -0.5
2,846,132 - AO356_12455 0.66 +0.4
2,846,132 - AO356_12455 0.66 +0.7
2,846,132 - AO356_12455 0.66 +1.7
2,846,265 + AO356_12455 0.84 -0.2
2,846,265 + AO356_12455 0.84 +0.6
2,846,265 + AO356_12455 0.84 +1.0
2,846,266 - AO356_12455 0.85 +0.2
2,846,266 - AO356_12455 0.85 +1.6
2,846,266 - AO356_12455 0.85 -0.4
2,846,350 - -0.9
2,846,429 + AO356_12460 0.21 -0.0
2,846,429 + AO356_12460 0.21 -0.0
2,846,429 + AO356_12460 0.21 -0.8
2,846,429 + AO356_12460 0.21 +0.3
2,846,430 - AO356_12460 0.22 -0.4
2,846,430 - AO356_12460 0.22 +0.4
2,846,430 - AO356_12460 0.22 +1.3
2,846,447 + AO356_12460 0.29 -1.0
2,846,447 + AO356_12460 0.29 +0.0
2,846,447 + AO356_12460 0.29 +0.6
2,846,448 - AO356_12460 0.29 -0.3
2,846,448 - AO356_12460 0.29 +0.4

Or see this region's nucleotide sequence