Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_08680

Experiment: L-Glutamic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_08670 and AO356_08675 are separated by 3 nucleotidesAO356_08675 and AO356_08680 overlap by 13 nucleotidesAO356_08680 and AO356_08685 are separated by 63 nucleotides AO356_08670: AO356_08670 - N-acetylmuramoyl-L-alanine amidase, at 1,952,034 to 1,953,464 _08670 AO356_08675: AO356_08675 - tRNA threonylcarbamoyladenosine biosynthesis protein TsaE, at 1,953,468 to 1,953,935 _08675 AO356_08680: AO356_08680 - carbohydrate kinase, at 1,953,923 to 1,955,422 _08680 AO356_08685: AO356_08685 - epoxyqueuosine reductase, at 1,955,486 to 1,956,565 _08685 Position (kb) 1953 1954 1955 1956Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1953.917 kb on - strandat 1953.925 kb on - strandat 1953.925 kb on - strandat 1953.925 kb on - strandat 1953.925 kb on - strandat 1953.925 kb on - strandat 1954.224 kb on + strand, within AO356_08680at 1954.224 kb on + strand, within AO356_08680at 1954.562 kb on + strand, within AO356_08680at 1954.562 kb on + strand, within AO356_08680at 1954.562 kb on + strand, within AO356_08680at 1954.562 kb on + strand, within AO356_08680at 1954.563 kb on - strand, within AO356_08680at 1954.563 kb on - strand, within AO356_08680at 1954.778 kb on - strand, within AO356_08680at 1954.978 kb on + strand, within AO356_08680at 1954.978 kb on + strand, within AO356_08680at 1954.995 kb on + strand, within AO356_08680at 1954.995 kb on + strand, within AO356_08680at 1954.995 kb on + strand, within AO356_08680at 1954.995 kb on + strand, within AO356_08680at 1954.995 kb on + strand, within AO356_08680at 1954.995 kb on + strand, within AO356_08680at 1954.995 kb on + strand, within AO356_08680at 1954.995 kb on + strand, within AO356_08680at 1954.996 kb on - strand, within AO356_08680at 1954.996 kb on - strand, within AO356_08680at 1954.996 kb on - strand, within AO356_08680at 1954.996 kb on - strand, within AO356_08680at 1954.996 kb on - strand, within AO356_08680at 1954.996 kb on - strand, within AO356_08680at 1954.996 kb on - strand, within AO356_08680at 1954.996 kb on - strand, within AO356_08680at 1954.996 kb on - strand, within AO356_08680at 1954.996 kb on - strand, within AO356_08680at 1954.996 kb on - strand, within AO356_08680at 1954.996 kb on - strand, within AO356_08680at 1954.996 kb on - strand, within AO356_08680at 1955.045 kb on + strand, within AO356_08680at 1955.046 kb on - strand, within AO356_08680at 1955.212 kb on - strand, within AO356_08680at 1955.386 kb on - strandat 1955.410 kb on + strandat 1955.410 kb on + strandat 1955.410 kb on + strandat 1955.411 kb on - strandat 1955.411 kb on - strandat 1955.453 kb on + strandat 1955.453 kb on + strandat 1955.453 kb on + strandat 1955.453 kb on + strandat 1955.454 kb on - strandat 1955.454 kb on - strandat 1955.454 kb on - strandat 1955.454 kb on - strandat 1955.454 kb on - strandat 1955.455 kb on + strandat 1955.455 kb on + strandat 1955.455 kb on + strandat 1955.455 kb on + strandat 1955.455 kb on + strandat 1955.455 kb on + strandat 1955.455 kb on + strandat 1955.455 kb on + strandat 1955.455 kb on + strandat 1955.455 kb on + strandat 1955.456 kb on - strandat 1955.456 kb on - strandat 1955.648 kb on + strand, within AO356_08685at 1955.648 kb on + strand, within AO356_08685at 1955.648 kb on + strand, within AO356_08685at 1955.648 kb on + strand, within AO356_08685at 1955.648 kb on + strand, within AO356_08685at 1955.648 kb on + strand, within AO356_08685at 1955.648 kb on + strand, within AO356_08685at 1955.648 kb on + strand, within AO356_08685at 1955.648 kb on + strand, within AO356_08685at 1955.648 kb on + strand, within AO356_08685at 1955.648 kb on + strand, within AO356_08685at 1955.648 kb on + strand, within AO356_08685at 1955.648 kb on + strand, within AO356_08685at 1955.649 kb on - strand, within AO356_08685at 1955.649 kb on - strand, within AO356_08685at 1955.649 kb on - strand, within AO356_08685at 1955.649 kb on - strand, within AO356_08685at 1955.649 kb on - strand, within AO356_08685at 1955.649 kb on - strand, within AO356_08685at 1955.649 kb on - strand, within AO356_08685at 1955.649 kb on - strand, within AO356_08685at 1955.649 kb on - strand, within AO356_08685at 1955.649 kb on - strand, within AO356_08685at 1955.649 kb on - strand, within AO356_08685at 1955.649 kb on - strand, within AO356_08685at 1955.650 kb on + strand, within AO356_08685at 1955.650 kb on + strand, within AO356_08685at 1955.650 kb on + strand, within AO356_08685at 1955.650 kb on + strand, within AO356_08685at 1955.651 kb on - strand, within AO356_08685at 1955.651 kb on - strand, within AO356_08685at 1955.651 kb on - strand, within AO356_08685at 1955.651 kb on - strand, within AO356_08685at 1955.651 kb on - strand, within AO356_08685at 1955.651 kb on - strand, within AO356_08685at 1955.732 kb on + strand, within AO356_08685at 1955.732 kb on + strand, within AO356_08685at 1955.733 kb on - strand, within AO356_08685at 1955.733 kb on - strand, within AO356_08685at 1955.733 kb on - strand, within AO356_08685at 1955.733 kb on - strand, within AO356_08685at 1955.733 kb on - strand, within AO356_08685at 1955.733 kb on - strand, within AO356_08685at 1955.786 kb on + strand, within AO356_08685at 1955.786 kb on + strand, within AO356_08685at 1955.786 kb on + strand, within AO356_08685at 1955.787 kb on - strand, within AO356_08685at 1955.787 kb on - strand, within AO356_08685at 1955.798 kb on + strand, within AO356_08685at 1955.799 kb on - strand, within AO356_08685at 1955.999 kb on + strand, within AO356_08685at 1956.103 kb on + strand, within AO356_08685at 1956.103 kb on + strand, within AO356_08685at 1956.103 kb on + strand, within AO356_08685at 1956.104 kb on - strand, within AO356_08685at 1956.126 kb on - strand, within AO356_08685at 1956.148 kb on + strand, within AO356_08685at 1956.149 kb on - strand, within AO356_08685at 1956.149 kb on - strand, within AO356_08685at 1956.149 kb on - strand, within AO356_08685at 1956.155 kb on + strand, within AO356_08685at 1956.155 kb on + strand, within AO356_08685

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (C)
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1,953,917 - +0.1
1,953,925 - -1.7
1,953,925 - -0.5
1,953,925 - -0.1
1,953,925 - -1.6
1,953,925 - -0.5
1,954,224 + AO356_08680 0.20 -1.4
1,954,224 + AO356_08680 0.20 -0.3
1,954,562 + AO356_08680 0.43 -0.2
1,954,562 + AO356_08680 0.43 -0.4
1,954,562 + AO356_08680 0.43 -0.4
1,954,562 + AO356_08680 0.43 -0.3
1,954,563 - AO356_08680 0.43 +1.2
1,954,563 - AO356_08680 0.43 +0.1
1,954,778 - AO356_08680 0.57 -0.2
1,954,978 + AO356_08680 0.70 -0.6
1,954,978 + AO356_08680 0.70 +0.1
1,954,995 + AO356_08680 0.71 -1.2
1,954,995 + AO356_08680 0.71 +0.3
1,954,995 + AO356_08680 0.71 -0.3
1,954,995 + AO356_08680 0.71 -0.4
1,954,995 + AO356_08680 0.71 -0.6
1,954,995 + AO356_08680 0.71 -1.2
1,954,995 + AO356_08680 0.71 -0.4
1,954,995 + AO356_08680 0.71 -1.5
1,954,996 - AO356_08680 0.72 -1.0
1,954,996 - AO356_08680 0.72 -0.5
1,954,996 - AO356_08680 0.72 -0.3
1,954,996 - AO356_08680 0.72 +0.2
1,954,996 - AO356_08680 0.72 +0.4
1,954,996 - AO356_08680 0.72 +0.7
1,954,996 - AO356_08680 0.72 +0.5
1,954,996 - AO356_08680 0.72 +0.1
1,954,996 - AO356_08680 0.72 +0.3
1,954,996 - AO356_08680 0.72 -0.6
1,954,996 - AO356_08680 0.72 +0.9
1,954,996 - AO356_08680 0.72 -0.5
1,954,996 - AO356_08680 0.72 +0.3
1,955,045 + AO356_08680 0.75 +0.1
1,955,046 - AO356_08680 0.75 -1.1
1,955,212 - AO356_08680 0.86 -0.3
1,955,386 - +0.4
1,955,410 + -0.6
1,955,410 + +0.1
1,955,410 + -0.3
1,955,411 - -0.3
1,955,411 - +0.1
1,955,453 + +0.1
1,955,453 + +0.9
1,955,453 + +0.4
1,955,453 + -0.5
1,955,454 - +0.4
1,955,454 - -0.0
1,955,454 - -1.8
1,955,454 - +0.6
1,955,454 - +0.3
1,955,455 + +0.5
1,955,455 + +0.9
1,955,455 + -0.7
1,955,455 + +3.4
1,955,455 + -0.1
1,955,455 + +0.0
1,955,455 + +0.0
1,955,455 + +0.2
1,955,455 + -0.3
1,955,455 + +0.4
1,955,456 - +2.4
1,955,456 - -0.5
1,955,648 + AO356_08685 0.15 -0.1
1,955,648 + AO356_08685 0.15 +0.1
1,955,648 + AO356_08685 0.15 -1.4
1,955,648 + AO356_08685 0.15 -0.9
1,955,648 + AO356_08685 0.15 +0.6
1,955,648 + AO356_08685 0.15 -1.2
1,955,648 + AO356_08685 0.15 +0.5
1,955,648 + AO356_08685 0.15 -0.4
1,955,648 + AO356_08685 0.15 +0.1
1,955,648 + AO356_08685 0.15 -0.4
1,955,648 + AO356_08685 0.15 -0.3
1,955,648 + AO356_08685 0.15 -0.3
1,955,648 + AO356_08685 0.15 -1.1
1,955,649 - AO356_08685 0.15 -1.1
1,955,649 - AO356_08685 0.15 +0.4
1,955,649 - AO356_08685 0.15 +1.4
1,955,649 - AO356_08685 0.15 +0.4
1,955,649 - AO356_08685 0.15 +0.1
1,955,649 - AO356_08685 0.15 -0.1
1,955,649 - AO356_08685 0.15 -0.3
1,955,649 - AO356_08685 0.15 -0.4
1,955,649 - AO356_08685 0.15 +0.3
1,955,649 - AO356_08685 0.15 -0.4
1,955,649 - AO356_08685 0.15 +0.4
1,955,649 - AO356_08685 0.15 -0.9
1,955,650 + AO356_08685 0.15 +0.1
1,955,650 + AO356_08685 0.15 -0.6
1,955,650 + AO356_08685 0.15 -0.6
1,955,650 + AO356_08685 0.15 -0.5
1,955,651 - AO356_08685 0.15 -0.3
1,955,651 - AO356_08685 0.15 +0.9
1,955,651 - AO356_08685 0.15 +0.1
1,955,651 - AO356_08685 0.15 -0.2
1,955,651 - AO356_08685 0.15 -0.2
1,955,651 - AO356_08685 0.15 -0.3
1,955,732 + AO356_08685 0.23 +0.4
1,955,732 + AO356_08685 0.23 +0.3
1,955,733 - AO356_08685 0.23 -1.1
1,955,733 - AO356_08685 0.23 +0.6
1,955,733 - AO356_08685 0.23 +1.6
1,955,733 - AO356_08685 0.23 +0.4
1,955,733 - AO356_08685 0.23 +1.1
1,955,733 - AO356_08685 0.23 -0.1
1,955,786 + AO356_08685 0.28 +0.7
1,955,786 + AO356_08685 0.28 +0.3
1,955,786 + AO356_08685 0.28 -1.0
1,955,787 - AO356_08685 0.28 -0.2
1,955,787 - AO356_08685 0.28 +0.0
1,955,798 + AO356_08685 0.29 -0.1
1,955,799 - AO356_08685 0.29 +0.2
1,955,999 + AO356_08685 0.47 -0.2
1,956,103 + AO356_08685 0.57 +0.2
1,956,103 + AO356_08685 0.57 +0.9
1,956,103 + AO356_08685 0.57 -0.5
1,956,104 - AO356_08685 0.57 +0.4
1,956,126 - AO356_08685 0.59 -0.6
1,956,148 + AO356_08685 0.61 +0.4
1,956,149 - AO356_08685 0.61 -1.0
1,956,149 - AO356_08685 0.61 +0.7
1,956,149 - AO356_08685 0.61 +0.5
1,956,155 + AO356_08685 0.62 +0.9
1,956,155 + AO356_08685 0.62 +0.4

Or see this region's nucleotide sequence