Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS17735

Experiment: R2A pH7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A pH7
3,878,732	+		LRK54_RS17725	0.88	-0.4
3,878,733	-		LRK54_RS17725	0.89	-2.0
3,878,733	-		LRK54_RS17725	0.89	-0.1
3,878,733	-		LRK54_RS17725	0.89	+2.0
3,878,733	-		LRK54_RS17725	0.89	+0.4
3,878,733	-		LRK54_RS17725	0.89	-0.7
3,878,735	+		LRK54_RS17725	0.89	-1.5
3,878,735	+		LRK54_RS17725	0.89	-0.7
3,878,735	+		LRK54_RS17725	0.89	+2.0
3,878,735	+		LRK54_RS17725	0.89	-0.6
3,878,736	-		LRK54_RS17725	0.89	-0.3
3,878,849	+				+0.3
3,878,850	-				+0.3
3,878,850	-				+0.8
3,878,850	-				+0.1
3,878,900	+				-0.5
3,879,095	+		LRK54_RS17730	0.12	-1.2
3,879,123	+		LRK54_RS17730	0.16	+0.5
3,879,308	+		LRK54_RS17730	0.42	+0.8
3,879,309	-		LRK54_RS17730	0.42	+0.7
3,879,309	-		LRK54_RS17730	0.42	+0.0
3,879,378	+		LRK54_RS17730	0.52	+1.0
3,879,378	+		LRK54_RS17730	0.52	+0.4
3,879,378	+		LRK54_RS17730	0.52	-0.5
3,879,378	+		LRK54_RS17730	0.52	+0.8
3,879,378	+		LRK54_RS17730	0.52	-0.7
3,879,378	+		LRK54_RS17730	0.52	+0.7
3,879,379	-		LRK54_RS17730	0.52	-0.1
3,879,379	-		LRK54_RS17730	0.52	+0.6
3,879,379	-		LRK54_RS17730	0.52	+1.7
3,879,398	+		LRK54_RS17730	0.55	-0.1
3,879,399	-		LRK54_RS17730	0.55	-0.4
3,879,567	+		LRK54_RS17730	0.78	+0.8
3,879,568	-		LRK54_RS17730	0.79	+1.3
3,879,782	-				-0.5
3,879,929	+		LRK54_RS17735	0.11	+1.0
3,879,929	+		LRK54_RS17735	0.11	-0.2
3,879,929	+		LRK54_RS17735	0.11	+0.5
3,879,929	+		LRK54_RS17735	0.11	+0.1
3,879,930	-		LRK54_RS17735	0.11	+2.6
3,880,360	+		LRK54_RS17735	0.33	+0.4
3,880,360	+		LRK54_RS17735	0.33	+0.4
3,880,360	+		LRK54_RS17735	0.33	+0.5
3,880,361	-		LRK54_RS17735	0.33	+0.5
3,880,361	-		LRK54_RS17735	0.33	+3.0
3,880,361	-		LRK54_RS17735	0.33	-0.6
3,880,370	-		LRK54_RS17735	0.34	-0.4
3,880,381	+		LRK54_RS17735	0.34	+0.4
3,880,382	-		LRK54_RS17735	0.34	+0.3
3,880,427	+		LRK54_RS17735	0.36	-1.0
3,880,427	+		LRK54_RS17735	0.36	+0.2
3,880,427	+		LRK54_RS17735	0.36	-1.6
3,880,427	+		LRK54_RS17735	0.36	-2.2
3,880,520	+		LRK54_RS17735	0.41	-0.9
3,880,520	+		LRK54_RS17735	0.41	-1.6
3,880,520	+		LRK54_RS17735	0.41	-1.7
3,880,520	+		LRK54_RS17735	0.41	-0.1
3,880,520	+		LRK54_RS17735	0.41	-0.6
3,880,520	+		LRK54_RS17735	0.41	-0.4
3,880,520	+		LRK54_RS17735	0.41	+0.2
3,880,520	+		LRK54_RS17735	0.41	+0.3
3,880,520	+		LRK54_RS17735	0.41	-0.5
3,880,520	+		LRK54_RS17735	0.41	+1.3
3,880,520	+		LRK54_RS17735	0.41	-0.1
3,880,521	-		LRK54_RS17735	0.41	+0.0
3,880,521	-		LRK54_RS17735	0.41	-0.6
3,880,521	-		LRK54_RS17735	0.41	+0.2
3,880,521	-		LRK54_RS17735	0.41	-2.0
3,880,521	-		LRK54_RS17735	0.41	-0.6
3,880,521	-		LRK54_RS17735	0.41	-0.6
3,880,521	-		LRK54_RS17735	0.41	+2.0
3,880,546	+		LRK54_RS17735	0.42	+0.5
3,880,546	+		LRK54_RS17735	0.42	+0.4
3,880,546	+		LRK54_RS17735	0.42	+0.5
3,880,546	+		LRK54_RS17735	0.42	+0.3
3,880,547	-		LRK54_RS17735	0.43	+0.1
3,880,547	-		LRK54_RS17735	0.43	-0.3
3,880,547	-		LRK54_RS17735	0.43	+1.1
3,880,773	+		LRK54_RS17735	0.54	-0.2
3,880,774	+		LRK54_RS17735	0.54	+2.0
3,880,774	+		LRK54_RS17735	0.54	-1.1
3,880,774	+		LRK54_RS17735	0.54	+0.7
3,880,774	+		LRK54_RS17735	0.54	-0.1
3,880,774	+		LRK54_RS17735	0.54	+0.6
3,880,774	+		LRK54_RS17735	0.54	+0.3
3,880,774	+		LRK54_RS17735	0.54	+1.0
3,880,775	-		LRK54_RS17735	0.54	-0.2
3,880,775	-		LRK54_RS17735	0.54	+1.4
3,880,820	-		LRK54_RS17735	0.56	+0.3
3,880,820	-		LRK54_RS17735	0.56	-1.4
3,880,928	+		LRK54_RS17735	0.62	+0.8
3,880,928	+		LRK54_RS17735	0.62	+2.3
3,880,928	+		LRK54_RS17735	0.62	-0.3
3,880,928	+		LRK54_RS17735	0.62	+0.3
3,880,928	+		LRK54_RS17735	0.62	-0.2
3,880,929	-		LRK54_RS17735	0.62	-0.0
3,880,929	-		LRK54_RS17735	0.62	+0.9
3,880,929	-		LRK54_RS17735	0.62	+1.3
3,881,250	+		LRK54_RS17735	0.78	+1.2
3,881,251	-		LRK54_RS17735	0.78	+1.3
3,881,251	-		LRK54_RS17735	0.78	-0.9
3,881,359	+		LRK54_RS17735	0.84	-0.9
3,881,359	+		LRK54_RS17735	0.84	+0.1
3,881,431	+		LRK54_RS17735	0.87	-2.1
3,881,488	+				-0.7
3,881,488	+				+0.5
3,881,488	+				-0.6
3,881,489	-				+0.7
3,881,504	+				+0.3
3,881,504	+				+0.2
3,881,505	-				-0.5
3,881,505	-				+1.1
3,881,505	-				+0.3
3,881,505	-				+0.0
3,881,505	-				-0.2
3,881,565	+				+1.0
3,881,566	-				-0.3
3,881,566	-				+1.0
3,881,566	-				-1.3
3,881,566	-				-0.5
3,881,619	+				-0.8
3,881,619	+				+0.6
3,881,619	+				+0.1
3,881,619	+				-1.0
3,881,620	-				-0.4
3,881,620	-				-1.1
3,881,623	+				+0.4
3,881,623	+				+0.9
3,881,624	-				-0.4
3,881,624	-				-0.9
3,881,624	-				-0.9
3,881,624	-				-1.0
3,881,651	+				+2.0
3,881,651	+				-0.2
3,881,651	+				+0.1
3,881,651	+				-1.6
3,881,651	+				+0.8
3,881,652	-				+0.8
3,881,714	-				+0.3
3,881,714	-				-0.9
3,881,714	-				-0.3
3,881,714	-				+0.1
3,881,714	-				-0.1
3,881,807	-				-1.9
3,881,893	-		LRK54_RS17740	0.11	-0.2
3,881,908	+		LRK54_RS17740	0.11	-0.1
3,881,909	-		LRK54_RS17740	0.11	-0.4
3,881,909	-		LRK54_RS17740	0.11	+0.4
3,881,909	-		LRK54_RS17740	0.11	+0.1
3,881,998	+		LRK54_RS17740	0.16	-0.2
3,881,998	+		LRK54_RS17740	0.16	-0.2
3,881,998	+		LRK54_RS17740	0.16	-0.1
3,881,998	+		LRK54_RS17740	0.16	+0.1
3,881,998	+		LRK54_RS17740	0.16	-0.2
3,881,998	+		LRK54_RS17740	0.16	-0.1
3,881,998	+		LRK54_RS17740	0.16	-1.1
3,881,998	+		LRK54_RS17740	0.16	-1.6
3,881,999	-		LRK54_RS17740	0.16	+0.5
3,881,999	-		LRK54_RS17740	0.16	-0.9
3,881,999	-		LRK54_RS17740	0.16	+1.1
3,881,999	-		LRK54_RS17740	0.16	-0.4
3,881,999	-		LRK54_RS17740	0.16	-0.5
3,881,999	-		LRK54_RS17740	0.16	-0.2
3,881,999	-		LRK54_RS17740	0.16	-0.9
3,882,248	+		LRK54_RS17740	0.29	+0.0
3,882,249	-		LRK54_RS17740	0.29	-0.5
3,882,249	-		LRK54_RS17740	0.29	+2.3
3,882,442	+		LRK54_RS17740	0.39	-1.3
3,882,442	+		LRK54_RS17740	0.39	-1.2
3,882,442	+		LRK54_RS17740	0.39	-0.4
3,882,442	+		LRK54_RS17740	0.39	-0.9
3,882,442	+		LRK54_RS17740	0.39	-0.3
3,882,442	+		LRK54_RS17740	0.39	+0.5
3,882,443	-		LRK54_RS17740	0.39	-1.2
3,882,443	-		LRK54_RS17740	0.39	-0.9
3,882,443	-		LRK54_RS17740	0.39	+0.6
3,882,443	-		LRK54_RS17740	0.39	+0.9
3,882,443	-		LRK54_RS17740	0.39	+0.4
3,882,443	-		LRK54_RS17740	0.39	-1.4
3,882,591	+		LRK54_RS17740	0.47	-0.1
3,882,591	+		LRK54_RS17740	0.47	+0.7
3,882,591	+		LRK54_RS17740	0.47	+1.3
3,882,591	+		LRK54_RS17740	0.47	+0.6
3,882,591	+		LRK54_RS17740	0.47	-0.5
3,882,591	+		LRK54_RS17740	0.47	+0.4
3,882,591	+		LRK54_RS17740	0.47	-0.3
3,882,592	-		LRK54_RS17740	0.47	-0.4
3,882,592	-		LRK54_RS17740	0.47	-1.5
3,882,592	-		LRK54_RS17740	0.47	-0.2
3,882,592	-		LRK54_RS17740	0.47	+1.0
3,882,592	-		LRK54_RS17740	0.47	-1.4
3,882,595	+		LRK54_RS17740	0.47	-1.3
3,882,595	+		LRK54_RS17740	0.47	+0.0
3,882,595	+		LRK54_RS17740	0.47	+0.3
3,882,595	+		LRK54_RS17740	0.47	-0.5
3,882,595	+		LRK54_RS17740	0.47	-0.6
3,882,595	+		LRK54_RS17740	0.47	+0.5
3,882,595	+		LRK54_RS17740	0.47	+0.1
3,882,595	+		LRK54_RS17740	0.47	+0.0
3,882,596	-		LRK54_RS17740	0.47	+0.1
3,882,596	-		LRK54_RS17740	0.47	-0.7
3,882,596	-		LRK54_RS17740	0.47	-0.4
3,882,596	-		LRK54_RS17740	0.47	+0.6
3,882,596	-		LRK54_RS17740	0.47	-0.1
3,882,596	-		LRK54_RS17740	0.47	+1.5
3,882,623	+		LRK54_RS17740	0.48	-1.1
3,882,623	+		LRK54_RS17740	0.48	-0.2
3,882,623	+		LRK54_RS17740	0.48	+0.5
3,882,623	+		LRK54_RS17740	0.48	+2.0
3,882,623	+		LRK54_RS17740	0.48	-1.2
3,882,623	+		LRK54_RS17740	0.48	+0.5
3,882,623	+		LRK54_RS17740	0.48	+0.1
3,882,624	-		LRK54_RS17740	0.48	-0.2
3,882,624	-		LRK54_RS17740	0.48	+1.3