Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS12505

Experiment: R2A pH7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A pH7
2,789,544	+				-0.7
2,789,544	+				+0.2
2,789,544	+				-0.7
2,789,544	+				-0.7
2,789,544	+				-0.4
2,789,545	-				-1.5
2,789,545	-				-0.1
2,789,545	-				-0.6
2,789,545	-				-0.6
2,789,546	+				-0.4
2,789,546	+				+1.4
2,789,546	+				-0.2
2,789,546	+				+0.8
2,789,546	+				-0.3
2,789,546	+				+1.4
2,789,546	+				+0.1
2,789,546	+				+1.1
2,789,546	+				-0.3
2,789,546	+				+0.4
2,789,547	-				+1.1
2,789,547	-				-0.5
2,789,547	-				-0.6
2,789,547	-				+0.8
2,789,547	-				+0.7
2,789,547	-				+0.3
2,789,547	-				-0.7
2,789,574	+				+1.5
2,789,574	+				-1.0
2,789,574	+				-0.2
2,789,575	-				+0.1
2,789,575	-				-1.7
2,789,575	-				-0.8
2,789,575	-				-1.4
2,789,701	-				-0.5
2,789,737	+				-1.0
2,789,737	+				-0.3
2,789,742	+				+2.1
2,789,743	-				+0.6
2,789,743	-				-0.8
2,789,788	+				+1.4
2,789,789	-				+0.0
2,789,856	+				+0.3
2,789,856	+				-0.9
2,789,856	+				+0.4
2,789,856	+				-0.3
2,789,857	-				-1.3
2,789,857	-				-0.4
2,789,867	+				+0.2
2,789,910	-				+0.2
2,789,915	-				+0.8
2,789,933	+				-0.7
2,789,933	+				-0.4
2,789,934	-				-1.9
2,790,001	+				+0.3
2,790,002	-				-1.6
2,790,002	-				-1.3
2,790,004	+				-2.1
2,790,004	+				-0.7
2,790,005	-				+0.7
2,790,008	+				-0.3
2,790,009	-				-0.4
2,790,009	-				-1.0
2,790,031	+				+0.0
2,790,031	+				+1.7
2,790,031	+				+2.9
2,790,031	+				+0.8
2,790,031	+				-0.2
2,790,032	-				+1.8
2,790,032	-				-0.1
2,790,032	-				-0.0
2,790,075	+				-0.9
2,790,110	+				-0.0
2,790,135	+				-1.2
2,790,135	+				+0.1
2,790,135	+				+0.7
2,790,136	-				+0.6
2,790,136	-				-0.4
2,790,136	-				+0.8
2,790,136	-				+0.2
2,790,136	-				-0.5
2,790,136	-				+0.8
2,790,148	+				-1.3
2,790,148	+				-0.5
2,790,149	-				+0.3
2,790,149	-				-0.4
2,790,178	+				-0.1
2,790,179	-				-0.4
2,790,211	+				-1.3
2,790,212	-				-0.0
2,790,231	+				-1.2
2,790,231	+				-0.9
2,790,237	+				-2.0
2,790,257	+				-1.3
2,790,258	-				-1.1
2,790,263	+				-1.4
2,790,263	+				+0.8
2,790,263	+				-0.5
2,790,264	-				+0.9
2,790,264	-				+0.0
2,790,292	-				+0.6
2,790,315	+				+0.2
2,790,315	+				-0.2
2,790,316	-				-0.3
2,790,316	-				+0.8
2,790,316	-				-0.5
2,790,316	-				+0.1
2,790,316	-				-1.5
2,790,316	-				-0.3
2,790,323	-				-0.4
2,790,335	+				-0.4
2,790,346	+				+1.3
2,790,346	+				-0.5
2,790,356	+				+0.7
2,790,356	+				+0.6
2,790,356	+				-0.9
2,790,356	+				-0.6
2,790,356	+				+0.4
2,790,357	-				+0.4
2,790,357	-				+1.7
2,790,357	-				-0.2
2,790,357	-				+0.7
2,790,357	-				-0.6
2,790,359	-				-0.6
2,790,405	+				+1.7
2,790,433	-				-0.2
2,790,491	+				+1.2
2,790,492	-				+0.1
2,790,504	-				-0.7
2,790,555	-		LRK54_RS12505	0.20	-0.2
2,790,555	-		LRK54_RS12505	0.20	+0.8
2,790,559	+		LRK54_RS12505	0.21	+1.0
2,790,559	+		LRK54_RS12505	0.21	+1.1
2,790,622	+		LRK54_RS12505	0.35	+0.0
2,790,626	+		LRK54_RS12505	0.36	+1.6
2,790,627	-		LRK54_RS12505	0.37	+1.0
2,790,664	-		LRK54_RS12505	0.45	-1.2
2,790,675	+		LRK54_RS12505	0.48	+1.7
2,790,683	+		LRK54_RS12505	0.50	+0.2
2,790,697	+		LRK54_RS12505	0.53	+0.4
2,790,697	+		LRK54_RS12505	0.53	+1.2
2,790,697	+		LRK54_RS12505	0.53	+0.7
2,790,698	-		LRK54_RS12505	0.53	+0.9
2,790,700	-		LRK54_RS12505	0.53	+0.8
2,790,733	+		LRK54_RS12505	0.61	-0.4
2,790,796	+		LRK54_RS12505	0.76	+0.2
2,790,797	-		LRK54_RS12505	0.76	-0.6
2,790,797	-		LRK54_RS12505	0.76	-0.7
2,790,797	-		LRK54_RS12505	0.76	+0.5
2,790,799	+		LRK54_RS12505	0.76	+0.9
2,790,799	+		LRK54_RS12505	0.76	+0.2
2,790,799	+		LRK54_RS12505	0.76	+0.3
2,790,799	+		LRK54_RS12505	0.76	+0.3
2,790,799	+		LRK54_RS12505	0.76	+0.8
2,790,799	+		LRK54_RS12505	0.76	+0.1
2,790,799	+		LRK54_RS12505	0.76	+0.1
2,790,799	+		LRK54_RS12505	0.76	+0.3
2,790,799	+		LRK54_RS12505	0.76	+0.1
2,790,799	+		LRK54_RS12505	0.76	-0.9
2,790,800	-		LRK54_RS12505	0.77	-1.2
2,790,800	-		LRK54_RS12505	0.77	+1.4
2,790,800	-		LRK54_RS12505	0.77	-0.1
2,790,800	-		LRK54_RS12505	0.77	-0.9
2,790,800	-		LRK54_RS12505	0.77	-2.2
2,790,800	-		LRK54_RS12505	0.77	+0.6
2,790,800	-		LRK54_RS12505	0.77	-0.3
2,790,803	+		LRK54_RS12505	0.77	+0.6
2,790,803	+		LRK54_RS12505	0.77	-0.7
2,790,803	+		LRK54_RS12505	0.77	-1.0
2,790,803	+		LRK54_RS12505	0.77	+1.7
2,790,803	+		LRK54_RS12505	0.77	-0.2
2,790,803	+		LRK54_RS12505	0.77	+0.9
2,790,803	+		LRK54_RS12505	0.77	+0.8
2,790,803	+		LRK54_RS12505	0.77	+0.2
2,790,803	+		LRK54_RS12505	0.77	+1.5
2,790,803	+		LRK54_RS12505	0.77	+0.2
2,790,803	+		LRK54_RS12505	0.77	+1.1
2,790,803	+		LRK54_RS12505	0.77	+2.2
2,790,803	+		LRK54_RS12505	0.77	+0.4
2,790,803	+		LRK54_RS12505	0.77	+1.3
2,790,804	-		LRK54_RS12505	0.78	+3.7
2,790,804	-		LRK54_RS12505	0.78	-0.4
2,790,804	-		LRK54_RS12505	0.78	-0.6
2,790,804	-		LRK54_RS12505	0.78	-0.6
2,790,804	-		LRK54_RS12505	0.78	-0.9
2,790,804	-		LRK54_RS12505	0.78	+0.7
2,790,804	-		LRK54_RS12505	0.78	+1.0
2,790,804	-		LRK54_RS12505	0.78	-1.2
2,790,804	-		LRK54_RS12505	0.78	-1.0
2,790,804	-		LRK54_RS12505	0.78	+0.7
2,790,804	-		LRK54_RS12505	0.78	+1.0
2,790,804	-		LRK54_RS12505	0.78	-1.9
2,790,804	-		LRK54_RS12505	0.78	-0.7
2,790,804	-		LRK54_RS12505	0.78	-0.7
2,790,804	-		LRK54_RS12505	0.78	+0.7
2,790,804	-		LRK54_RS12505	0.78	+0.0
2,790,804	-		LRK54_RS12505	0.78	+1.3
2,790,804	-		LRK54_RS12505	0.78	+0.0
2,790,804	-		LRK54_RS12505	0.78	+1.0
2,790,823	+		LRK54_RS12505	0.82	+0.8
2,790,823	+		LRK54_RS12505	0.82	+0.6
2,790,823	+		LRK54_RS12505	0.82	+0.1
2,790,823	+		LRK54_RS12505	0.82	-0.1
2,790,824	-		LRK54_RS12505	0.82	-0.6
2,790,824	-		LRK54_RS12505	0.82	+1.2
2,790,824	-		LRK54_RS12505	0.82	+0.4
2,790,898	+				+0.3
2,790,898	+				-0.7
2,790,899	-				+0.7
2,790,932	+				-0.1
2,790,932	+				-1.0
2,790,932	+				+1.3
2,790,933	-				-1.4
2,790,933	-				+1.9
2,790,933	-				+0.1
2,790,933	-				-0.1
2,790,933	-				+0.5
2,790,933	-				-0.2
2,791,100	-				+1.4
2,791,100	-				-0.7
2,791,100	-				+0.7
2,791,168	+				-0.4
2,791,168	+				+0.8
2,791,168	+				-2.2
2,791,169	-				+2.4
2,791,169	-				+0.5
2,791,169	-				-1.1
2,791,190	-				+1.8
2,791,302	+		LRK54_RS12510	0.10	-1.3
2,791,302	+		LRK54_RS12510	0.10	+0.6
2,791,302	+		LRK54_RS12510	0.10	+0.6
2,791,302	+		LRK54_RS12510	0.10	+0.2
2,791,302	+		LRK54_RS12510	0.10	-1.3
2,791,302	+		LRK54_RS12510	0.10	+1.6
2,791,302	+		LRK54_RS12510	0.10	+1.3
2,791,302	+		LRK54_RS12510	0.10	-1.0
2,791,302	+		LRK54_RS12510	0.10	-1.4
2,791,303	-		LRK54_RS12510	0.10	+1.4
2,791,303	-		LRK54_RS12510	0.10	+0.3
2,791,303	-		LRK54_RS12510	0.10	-0.2
2,791,303	-		LRK54_RS12510	0.10	+0.4
2,791,483	+		LRK54_RS12510	0.19	+1.1
2,791,483	+		LRK54_RS12510	0.19	-0.2
2,791,483	+		LRK54_RS12510	0.19	-0.7
2,791,483	+		LRK54_RS12510	0.19	-1.3
2,791,483	+		LRK54_RS12510	0.19	+1.6
2,791,483	+		LRK54_RS12510	0.19	-0.3
2,791,483	+		LRK54_RS12510	0.19	+0.5
2,791,483	+		LRK54_RS12510	0.19	+0.5
2,791,483	+		LRK54_RS12510	0.19	-0.6
2,791,483	+		LRK54_RS12510	0.19	+0.8
2,791,483	+		LRK54_RS12510	0.19	+2.0
2,791,483	+		LRK54_RS12510	0.19	+0.7
2,791,483	-		LRK54_RS12510	0.19	-1.8
2,791,484	-		LRK54_RS12510	0.19	-0.5
2,791,484	-		LRK54_RS12510	0.19	-0.2
2,791,484	-		LRK54_RS12510	0.19	-1.9
2,791,484	-		LRK54_RS12510	0.19	+0.8
2,791,484	-		LRK54_RS12510	0.19	-0.6
2,791,484	-		LRK54_RS12510	0.19	+0.3
2,791,484	-		LRK54_RS12510	0.19	+1.1
2,791,484	-		LRK54_RS12510	0.19	+0.7
2,791,484	-		LRK54_RS12510	0.19	+0.8
2,791,484	-		LRK54_RS12510	0.19	-2.0
2,791,484	-		LRK54_RS12510	0.19	+1.3
2,791,484	-		LRK54_RS12510	0.19	+0.8
2,791,484	-		LRK54_RS12510	0.19	-0.1
2,791,484	-		LRK54_RS12510	0.19	+1.5
2,791,495	+		LRK54_RS12510	0.19	-0.2
2,791,495	+		LRK54_RS12510	0.19	+0.4
2,791,495	+		LRK54_RS12510	0.19	-1.7
2,791,495	+		LRK54_RS12510	0.19	+0.7
2,791,495	+		LRK54_RS12510	0.19	-1.4
2,791,495	+		LRK54_RS12510	0.19	+1.4
2,791,495	+		LRK54_RS12510	0.19	-1.1
2,791,496	-		LRK54_RS12510	0.20	+0.4
2,791,496	-		LRK54_RS12510	0.20	-0.4
2,791,751	-		LRK54_RS12510	0.32	-1.9
2,791,790	-		LRK54_RS12510	0.34	-2.3