Experiment: R2A pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK54_RS03675 and LRK54_RS03680 are separated by 81 nucleotides LRK54_RS03680 and LRK54_RS03685 are separated by 54 nucleotides LRK54_RS03685 and LRK54_RS03690 are separated by 114 nucleotides
LRK54_RS03675: LRK54_RS03675 - redox-regulated ATPase YchF, at 779,805 to 780,893
_RS03675
LRK54_RS03680: LRK54_RS03680 - aminoacyl-tRNA hydrolase, at 780,975 to 781,556
_RS03680
LRK54_RS03685: LRK54_RS03685 - 50S ribosomal protein L25/general stress protein Ctc, at 781,611 to 782,276
_RS03685
LRK54_RS03690: LRK54_RS03690 - ribose-phosphate diphosphokinase, at 782,391 to 783,332
_RS03690
Position (kb) 781
782
783 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 780.969 kb on + strand at 780.969 kb on + strand at 780.970 kb on - strand at 780.970 kb on - strand at 780.970 kb on - strand at 780.976 kb on + strand at 780.976 kb on + strand at 780.976 kb on + strand at 780.976 kb on + strand at 780.977 kb on - strand at 780.977 kb on - strand at 780.977 kb on - strand at 780.977 kb on - strand at 780.977 kb on - strand at 780.989 kb on + strand at 780.989 kb on + strand at 780.989 kb on + strand at 780.989 kb on + strand at 780.990 kb on - strand at 780.990 kb on - strand at 780.990 kb on - strand at 780.990 kb on - strand at 780.990 kb on - strand at 780.990 kb on - strand at 780.990 kb on - strand at 780.990 kb on - strand at 780.990 kb on - strand at 780.990 kb on - strand at 780.990 kb on - strand at 780.990 kb on - strand at 780.990 kb on - strand at 780.990 kb on - strand at 780.990 kb on - strand at 780.990 kb on - strand at 780.990 kb on - strand at 782.385 kb on - strand at 782.385 kb on - strand at 782.385 kb on - strand at 782.385 kb on - strand at 782.385 kb on - strand at 782.385 kb on - strand at 782.385 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A pH7 remove 780,969 + -0.5 780,969 + +0.9 780,970 - -0.8 780,970 - +0.5 780,970 - -0.3 780,976 + -1.9 780,976 + -0.1 780,976 + +1.0 780,976 + +0.7 780,977 - -0.2 780,977 - +1.0 780,977 - -3.6 780,977 - -0.7 780,977 - -0.8 780,989 + -0.7 780,989 + -0.1 780,989 + +0.5 780,989 + +1.5 780,990 - -1.6 780,990 - +0.7 780,990 - +0.6 780,990 - +2.1 780,990 - +0.4 780,990 - +0.5 780,990 - -0.1 780,990 - -0.2 780,990 - -0.2 780,990 - +0.9 780,990 - -0.9 780,990 - +0.9 780,990 - +0.4 780,990 - +0.2 780,990 - +0.4 780,990 - +0.7 780,990 - -1.2 782,385 - -0.8 782,385 - -1.2 782,385 - -1.4 782,385 - +0.9 782,385 - -2.1 782,385 - +2.5 782,385 - -0.2
Or see this region's nucleotide sequence