Experiment: Sisomicin 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS23705 and HSERO_RS23710 are separated by 243 nucleotides HSERO_RS23710 and HSERO_RS23715 are separated by 52 nucleotides HSERO_RS23715 and HSERO_RS23720 overlap by 11 nucleotides
HSERO_RS23705: HSERO_RS23705 - hydrogenase, at 5,434,091 to 5,434,429
_RS23705
HSERO_RS23710: HSERO_RS23710 - response regulator GlrR, at 5,434,673 to 5,436,055
_RS23710
HSERO_RS23715: HSERO_RS23715 - hypothetical protein, at 5,436,108 to 5,436,608
_RS23715
HSERO_RS23720: HSERO_RS23720 - histidine kinase, at 5,436,598 to 5,438,076
_RS23720
Position (kb) 5434
5435
5436
5437 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5433.946 kb on + strand at 5434.023 kb on - strand at 5434.036 kb on - strand at 5434.079 kb on + strand at 5434.088 kb on + strand at 5434.092 kb on - strand at 5434.106 kb on - strand at 5434.107 kb on + strand at 5434.118 kb on + strand at 5434.203 kb on - strand, within HSERO_RS23705 at 5434.209 kb on + strand, within HSERO_RS23705 at 5434.272 kb on + strand, within HSERO_RS23705 at 5434.272 kb on + strand, within HSERO_RS23705 at 5434.272 kb on + strand at 5434.280 kb on - strand, within HSERO_RS23705 at 5434.466 kb on - strand at 5434.468 kb on + strand at 5434.470 kb on + strand at 5434.473 kb on - strand at 5434.479 kb on - strand at 5434.501 kb on - strand at 5434.873 kb on + strand, within HSERO_RS23710 at 5434.917 kb on - strand, within HSERO_RS23710 at 5434.956 kb on + strand, within HSERO_RS23710 at 5435.087 kb on - strand, within HSERO_RS23710 at 5435.268 kb on - strand at 5435.307 kb on + strand, within HSERO_RS23710 at 5435.315 kb on - strand, within HSERO_RS23710 at 5435.386 kb on - strand, within HSERO_RS23710 at 5435.386 kb on - strand, within HSERO_RS23710 at 5435.722 kb on + strand, within HSERO_RS23710 at 5435.753 kb on + strand, within HSERO_RS23710 at 5435.791 kb on + strand at 5436.062 kb on + strand at 5436.186 kb on - strand, within HSERO_RS23715 at 5436.193 kb on + strand, within HSERO_RS23715 at 5436.213 kb on + strand, within HSERO_RS23715 at 5436.285 kb on - strand, within HSERO_RS23715 at 5436.311 kb on - strand, within HSERO_RS23715 at 5436.339 kb on - strand, within HSERO_RS23715 at 5436.345 kb on - strand, within HSERO_RS23715 at 5436.363 kb on + strand, within HSERO_RS23715 at 5436.376 kb on + strand, within HSERO_RS23715 at 5436.385 kb on + strand, within HSERO_RS23715 at 5436.509 kb on + strand, within HSERO_RS23715 at 5436.546 kb on + strand, within HSERO_RS23715 at 5436.653 kb on + strand at 5436.723 kb on + strand at 5436.728 kb on + strand at 5436.736 kb on - strand at 5436.738 kb on + strand at 5436.746 kb on - strand, within HSERO_RS23720 at 5436.750 kb on + strand, within HSERO_RS23720 at 5436.759 kb on - strand, within HSERO_RS23720 at 5436.851 kb on + strand, within HSERO_RS23720 at 5436.873 kb on - strand, within HSERO_RS23720 at 5436.899 kb on + strand, within HSERO_RS23720
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.125 mg/ml remove 5,433,946 + +0.2 5,434,023 - +0.5 5,434,036 - -0.4 5,434,079 + +0.5 5,434,088 + +0.1 5,434,092 - +1.1 5,434,106 - +0.3 5,434,107 + +0.9 5,434,118 + -2.2 5,434,203 - HSERO_RS23705 0.33 -0.5 5,434,209 + HSERO_RS23705 0.35 +0.6 5,434,272 + HSERO_RS23705 0.53 -1.4 5,434,272 + HSERO_RS23705 0.53 -0.3 5,434,272 + +0.9 5,434,280 - HSERO_RS23705 0.56 -0.4 5,434,466 - +0.5 5,434,468 + +0.2 5,434,470 + -1.9 5,434,473 - +2.3 5,434,479 - -0.2 5,434,501 - -0.5 5,434,873 + HSERO_RS23710 0.14 +0.3 5,434,917 - HSERO_RS23710 0.18 +0.4 5,434,956 + HSERO_RS23710 0.20 +0.6 5,435,087 - HSERO_RS23710 0.30 -1.2 5,435,268 - +1.3 5,435,307 + HSERO_RS23710 0.46 +0.5 5,435,315 - HSERO_RS23710 0.46 -0.5 5,435,386 - HSERO_RS23710 0.52 -0.7 5,435,386 - HSERO_RS23710 0.52 -0.4 5,435,722 + HSERO_RS23710 0.76 +0.5 5,435,753 + HSERO_RS23710 0.78 -0.5 5,435,791 + +2.9 5,436,062 + -0.5 5,436,186 - HSERO_RS23715 0.16 -0.6 5,436,193 + HSERO_RS23715 0.17 -0.5 5,436,213 + HSERO_RS23715 0.21 -1.5 5,436,285 - HSERO_RS23715 0.35 -2.1 5,436,311 - HSERO_RS23715 0.41 -1.9 5,436,339 - HSERO_RS23715 0.46 -2.4 5,436,345 - HSERO_RS23715 0.47 -1.3 5,436,363 + HSERO_RS23715 0.51 -0.5 5,436,376 + HSERO_RS23715 0.53 -1.0 5,436,385 + HSERO_RS23715 0.55 +0.5 5,436,509 + HSERO_RS23715 0.80 -1.4 5,436,546 + HSERO_RS23715 0.87 -1.3 5,436,653 + -0.3 5,436,723 + +0.0 5,436,728 + -0.0 5,436,736 - -3.2 5,436,738 + -0.4 5,436,746 - HSERO_RS23720 0.10 +0.2 5,436,750 + HSERO_RS23720 0.10 +1.1 5,436,759 - HSERO_RS23720 0.11 -1.1 5,436,851 + HSERO_RS23720 0.17 -2.6 5,436,873 - HSERO_RS23720 0.19 -0.7 5,436,899 + HSERO_RS23720 0.20 -0.4
Or see this region's nucleotide sequence