Experiment: Sisomicin 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS23620 and HSERO_RS23625 are separated by 18 nucleotides HSERO_RS23625 and HSERO_RS23630 are separated by 3 nucleotides HSERO_RS23630 and HSERO_RS23635 are separated by 68 nucleotides HSERO_RS23635 and HSERO_RS23640 are separated by 58 nucleotides
HSERO_RS23620: HSERO_RS23620 - urease subunit alpha, at 5,415,734 to 5,417,434
_RS23620
HSERO_RS23625: HSERO_RS23625 - urease accessory protein UreE, at 5,417,453 to 5,417,986
_RS23625
HSERO_RS23630: HSERO_RS23630 - urease accessory protein UreF, at 5,417,990 to 5,418,670
_RS23630
HSERO_RS23635: HSERO_RS23635 - urease accessory protein UreG, at 5,418,739 to 5,419,371
_RS23635
HSERO_RS23640: HSERO_RS23640 - Ni/Fe hydrogenase, at 5,419,430 to 5,420,041
_RS23640
Position (kb) 5417
5418
5419 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 5417.080 kb on - strand, within HSERO_RS23620 at 5417.256 kb on + strand, within HSERO_RS23620 at 5417.357 kb on - strand at 5417.520 kb on - strand, within HSERO_RS23625 at 5417.592 kb on + strand, within HSERO_RS23625 at 5417.600 kb on - strand, within HSERO_RS23625 at 5417.609 kb on + strand, within HSERO_RS23625 at 5417.650 kb on - strand, within HSERO_RS23625 at 5417.980 kb on + strand at 5418.068 kb on + strand, within HSERO_RS23630 at 5418.077 kb on - strand, within HSERO_RS23630 at 5418.110 kb on - strand, within HSERO_RS23630 at 5418.140 kb on - strand, within HSERO_RS23630 at 5418.878 kb on - strand, within HSERO_RS23635 at 5419.035 kb on + strand, within HSERO_RS23635 at 5419.085 kb on + strand, within HSERO_RS23635 at 5419.293 kb on + strand, within HSERO_RS23635 at 5419.626 kb on - strand, within HSERO_RS23640 at 5419.636 kb on - strand, within HSERO_RS23640
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.125 mg/ml remove 5,417,080 - HSERO_RS23620 0.79 -0.6 5,417,256 + HSERO_RS23620 0.89 -0.1 5,417,357 - -0.0 5,417,520 - HSERO_RS23625 0.13 +1.0 5,417,592 + HSERO_RS23625 0.26 +0.3 5,417,600 - HSERO_RS23625 0.28 -3.9 5,417,609 + HSERO_RS23625 0.29 +0.6 5,417,650 - HSERO_RS23625 0.37 +0.7 5,417,980 + +0.5 5,418,068 + HSERO_RS23630 0.11 +0.3 5,418,077 - HSERO_RS23630 0.13 +0.6 5,418,110 - HSERO_RS23630 0.18 +0.1 5,418,140 - HSERO_RS23630 0.22 -1.8 5,418,878 - HSERO_RS23635 0.22 +0.8 5,419,035 + HSERO_RS23635 0.47 -0.8 5,419,085 + HSERO_RS23635 0.55 +0.7 5,419,293 + HSERO_RS23635 0.88 +0.9 5,419,626 - HSERO_RS23640 0.32 -2.2 5,419,636 - HSERO_RS23640 0.34 -1.4
Or see this region's nucleotide sequence