Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS23335

Experiment: Sisomicin 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS23330 and HSERO_RS23335 are separated by 90 nucleotidesHSERO_RS23335 and HSERO_RS23340 are separated by 214 nucleotides HSERO_RS23330: HSERO_RS23330 - penicillin-binding protein 2, at 5,354,219 to 5,356,189 _RS23330 HSERO_RS23335: HSERO_RS23335 - cell wall shape-determining protein, at 5,356,280 to 5,357,389 _RS23335 HSERO_RS23340: HSERO_RS23340 - lipoprotein, at 5,357,604 to 5,358,740 _RS23340 Position (kb) 5356 5357 5358Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 5357.410 kb on + strandat 5357.699 kb on + strandat 5358.137 kb on + strand, within HSERO_RS23340at 5358.137 kb on + strand, within HSERO_RS23340at 5358.137 kb on + strand, within HSERO_RS23340at 5358.174 kb on - strand, within HSERO_RS23340

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.125 mg/ml
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5,357,410 + +0.7
5,357,699 + -0.2
5,358,137 + HSERO_RS23340 0.47 -0.5
5,358,137 + HSERO_RS23340 0.47 -2.1
5,358,137 + HSERO_RS23340 0.47 +0.4
5,358,174 - HSERO_RS23340 0.50 -4.1

Or see this region's nucleotide sequence