Experiment: Sisomicin 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS22915 and HSERO_RS22920 are separated by 24 nucleotides HSERO_RS22920 and HSERO_RS22925 are separated by 185 nucleotides HSERO_RS22925 and HSERO_RS22930 are separated by 18 nucleotides
HSERO_RS22915: HSERO_RS22915 - Fis family transcriptional regulator, at 5,257,781 to 5,259,616
_RS22915
HSERO_RS22920: HSERO_RS22920 - hypothetical protein, at 5,259,641 to 5,259,928
_RS22920
HSERO_RS22925: HSERO_RS22925 - MFS transporter, at 5,260,114 to 5,261,550
_RS22925
HSERO_RS22930: HSERO_RS22930 - helicase, at 5,261,569 to 5,264,058
_RS22930
Position (kb) 5260
5261
5262 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 5259.168 kb on + strand, within HSERO_RS22915 at 5259.168 kb on + strand, within HSERO_RS22915 at 5259.168 kb on + strand, within HSERO_RS22915 at 5259.176 kb on - strand, within HSERO_RS22915 at 5259.318 kb on + strand, within HSERO_RS22915 at 5259.449 kb on + strand at 5259.834 kb on + strand, within HSERO_RS22920 at 5259.878 kb on + strand, within HSERO_RS22920 at 5259.891 kb on - strand, within HSERO_RS22920 at 5259.979 kb on + strand at 5260.223 kb on + strand at 5260.263 kb on + strand, within HSERO_RS22925 at 5260.344 kb on - strand, within HSERO_RS22925 at 5260.455 kb on + strand, within HSERO_RS22925 at 5260.478 kb on - strand, within HSERO_RS22925 at 5260.481 kb on + strand, within HSERO_RS22925 at 5260.481 kb on + strand, within HSERO_RS22925 at 5260.537 kb on - strand, within HSERO_RS22925 at 5260.672 kb on - strand, within HSERO_RS22925 at 5260.788 kb on + strand, within HSERO_RS22925 at 5260.809 kb on + strand, within HSERO_RS22925 at 5260.817 kb on - strand, within HSERO_RS22925 at 5260.932 kb on + strand, within HSERO_RS22925 at 5261.093 kb on - strand, within HSERO_RS22925 at 5261.129 kb on + strand, within HSERO_RS22925 at 5261.439 kb on + strand at 5261.466 kb on - strand at 5261.495 kb on + strand at 5261.841 kb on - strand, within HSERO_RS22930 at 5261.871 kb on - strand, within HSERO_RS22930 at 5262.006 kb on - strand, within HSERO_RS22930 at 5262.129 kb on - strand, within HSERO_RS22930 at 5262.212 kb on - strand, within HSERO_RS22930 at 5262.213 kb on + strand, within HSERO_RS22930 at 5262.274 kb on + strand, within HSERO_RS22930 at 5262.274 kb on + strand, within HSERO_RS22930 at 5262.280 kb on - strand, within HSERO_RS22930 at 5262.280 kb on - strand, within HSERO_RS22930 at 5262.372 kb on + strand, within HSERO_RS22930 at 5262.416 kb on + strand, within HSERO_RS22930 at 5262.422 kb on - strand, within HSERO_RS22930 at 5262.453 kb on + strand, within HSERO_RS22930
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.125 mg/ml remove 5,259,168 + HSERO_RS22915 0.76 +0.5 5,259,168 + HSERO_RS22915 0.76 +0.9 5,259,168 + HSERO_RS22915 0.76 +1.9 5,259,176 - HSERO_RS22915 0.76 +0.1 5,259,318 + HSERO_RS22915 0.84 +0.8 5,259,449 + +0.6 5,259,834 + HSERO_RS22920 0.67 +2.9 5,259,878 + HSERO_RS22920 0.82 -0.1 5,259,891 - HSERO_RS22920 0.87 -0.9 5,259,979 + -0.3 5,260,223 + -1.1 5,260,263 + HSERO_RS22925 0.10 -0.7 5,260,344 - HSERO_RS22925 0.16 -1.1 5,260,455 + HSERO_RS22925 0.24 -1.7 5,260,478 - HSERO_RS22925 0.25 +0.3 5,260,481 + HSERO_RS22925 0.26 -0.4 5,260,481 + HSERO_RS22925 0.26 -0.5 5,260,537 - HSERO_RS22925 0.29 +1.8 5,260,672 - HSERO_RS22925 0.39 +4.2 5,260,788 + HSERO_RS22925 0.47 +0.2 5,260,809 + HSERO_RS22925 0.48 +0.4 5,260,817 - HSERO_RS22925 0.49 -1.8 5,260,932 + HSERO_RS22925 0.57 -1.8 5,261,093 - HSERO_RS22925 0.68 +2.2 5,261,129 + HSERO_RS22925 0.71 +0.8 5,261,439 + +0.1 5,261,466 - -0.1 5,261,495 + +0.1 5,261,841 - HSERO_RS22930 0.11 -0.3 5,261,871 - HSERO_RS22930 0.12 -0.2 5,262,006 - HSERO_RS22930 0.18 -0.5 5,262,129 - HSERO_RS22930 0.22 -0.4 5,262,212 - HSERO_RS22930 0.26 -0.6 5,262,213 + HSERO_RS22930 0.26 -0.4 5,262,274 + HSERO_RS22930 0.28 -1.4 5,262,274 + HSERO_RS22930 0.28 +0.5 5,262,280 - HSERO_RS22930 0.29 -0.1 5,262,280 - HSERO_RS22930 0.29 +0.2 5,262,372 + HSERO_RS22930 0.32 +0.3 5,262,416 + HSERO_RS22930 0.34 -0.6 5,262,422 - HSERO_RS22930 0.34 +0.0 5,262,453 + HSERO_RS22930 0.36 -0.6
Or see this region's nucleotide sequence