Experiment: Sisomicin 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS22910 and HSERO_RS22915 are separated by 300 nucleotides HSERO_RS22915 and HSERO_RS22920 are separated by 24 nucleotides HSERO_RS22920 and HSERO_RS22925 are separated by 185 nucleotides
HSERO_RS22910: HSERO_RS22910 - benzaldehyde dehydrogenase, at 5,256,017 to 5,257,480
_RS22910
HSERO_RS22915: HSERO_RS22915 - Fis family transcriptional regulator, at 5,257,781 to 5,259,616
_RS22915
HSERO_RS22920: HSERO_RS22920 - hypothetical protein, at 5,259,641 to 5,259,928
_RS22920
HSERO_RS22925: HSERO_RS22925 - MFS transporter, at 5,260,114 to 5,261,550
_RS22925
Position (kb) 5257
5258
5259
5260 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5256.826 kb on + strand, within HSERO_RS22910 at 5256.937 kb on + strand, within HSERO_RS22910 at 5256.942 kb on + strand, within HSERO_RS22910 at 5256.950 kb on - strand, within HSERO_RS22910 at 5257.139 kb on + strand, within HSERO_RS22910 at 5257.164 kb on - strand, within HSERO_RS22910 at 5257.167 kb on + strand, within HSERO_RS22910 at 5257.175 kb on - strand, within HSERO_RS22910 at 5257.183 kb on - strand, within HSERO_RS22910 at 5257.358 kb on - strand at 5257.403 kb on - strand at 5257.491 kb on + strand at 5258.161 kb on + strand, within HSERO_RS22915 at 5258.169 kb on - strand, within HSERO_RS22915 at 5258.341 kb on - strand, within HSERO_RS22915 at 5258.387 kb on + strand, within HSERO_RS22915 at 5258.459 kb on + strand, within HSERO_RS22915 at 5258.472 kb on - strand, within HSERO_RS22915 at 5258.560 kb on + strand, within HSERO_RS22915 at 5258.732 kb on + strand, within HSERO_RS22915 at 5258.941 kb on + strand, within HSERO_RS22915 at 5259.168 kb on + strand, within HSERO_RS22915 at 5259.168 kb on + strand, within HSERO_RS22915 at 5259.168 kb on + strand, within HSERO_RS22915 at 5259.176 kb on - strand, within HSERO_RS22915 at 5259.318 kb on + strand, within HSERO_RS22915 at 5259.449 kb on + strand at 5259.834 kb on + strand, within HSERO_RS22920 at 5259.878 kb on + strand, within HSERO_RS22920 at 5259.891 kb on - strand, within HSERO_RS22920 at 5259.979 kb on + strand at 5260.223 kb on + strand at 5260.263 kb on + strand, within HSERO_RS22925 at 5260.344 kb on - strand, within HSERO_RS22925 at 5260.455 kb on + strand, within HSERO_RS22925 at 5260.478 kb on - strand, within HSERO_RS22925 at 5260.481 kb on + strand, within HSERO_RS22925 at 5260.481 kb on + strand, within HSERO_RS22925 at 5260.537 kb on - strand, within HSERO_RS22925
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.125 mg/ml remove 5,256,826 + HSERO_RS22910 0.55 -0.1 5,256,937 + HSERO_RS22910 0.63 -2.8 5,256,942 + HSERO_RS22910 0.63 -2.8 5,256,950 - HSERO_RS22910 0.64 +1.1 5,257,139 + HSERO_RS22910 0.77 -1.2 5,257,164 - HSERO_RS22910 0.78 +0.0 5,257,167 + HSERO_RS22910 0.79 +0.5 5,257,175 - HSERO_RS22910 0.79 +0.4 5,257,183 - HSERO_RS22910 0.80 +1.2 5,257,358 - -0.2 5,257,403 - +0.3 5,257,491 + -2.0 5,258,161 + HSERO_RS22915 0.21 +0.9 5,258,169 - HSERO_RS22915 0.21 +0.6 5,258,341 - HSERO_RS22915 0.31 -1.1 5,258,387 + HSERO_RS22915 0.33 +0.3 5,258,459 + HSERO_RS22915 0.37 -0.4 5,258,472 - HSERO_RS22915 0.38 -0.3 5,258,560 + HSERO_RS22915 0.42 -0.8 5,258,732 + HSERO_RS22915 0.52 +1.1 5,258,941 + HSERO_RS22915 0.63 +0.2 5,259,168 + HSERO_RS22915 0.76 +0.5 5,259,168 + HSERO_RS22915 0.76 +0.9 5,259,168 + HSERO_RS22915 0.76 +1.9 5,259,176 - HSERO_RS22915 0.76 +0.1 5,259,318 + HSERO_RS22915 0.84 +0.8 5,259,449 + +0.6 5,259,834 + HSERO_RS22920 0.67 +2.9 5,259,878 + HSERO_RS22920 0.82 -0.1 5,259,891 - HSERO_RS22920 0.87 -0.9 5,259,979 + -0.3 5,260,223 + -1.1 5,260,263 + HSERO_RS22925 0.10 -0.7 5,260,344 - HSERO_RS22925 0.16 -1.1 5,260,455 + HSERO_RS22925 0.24 -1.7 5,260,478 - HSERO_RS22925 0.25 +0.3 5,260,481 + HSERO_RS22925 0.26 -0.4 5,260,481 + HSERO_RS22925 0.26 -0.5 5,260,537 - HSERO_RS22925 0.29 +1.8
Or see this region's nucleotide sequence